slc9a2 (LOC107688777,LOC107602878,LOC107716761)


Basic Information

Item Value
gene id slc9a2
gene name LOC107688777,LOC107602878,LOC107716761
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7106559 ~ 7117477 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248360.1
ctgtatatataagtaataacattaaatgtaaaaaatgagtatttttttccactactgataacattacaaacataaaatagtaataactCATTCTGAACCCAATGCTCCTTAAACCTCTTCGTAGAAATATTACTTCTGAACTGTTTGTTATGTCGGAGAGGAACAGGTTACCTACAGGAAGCGAAACTAATTGAAAGGGAAGGACCAGGCGTACCACACACCTGCCCGTCGAAACAGACCCTACTCAAGAGAGTGCCACGATTAGATGAAGggaacacttttaaaatgtatttttaattcttcaCATAGTCAGTTTTTATGTCAGCTTCTGGTATACATGCATGCACTCTGAGAAAATATGATGCTTAACTTTAATGGAAGGGCGCGTTTTAACTTTTTGATTTTGTGCGTAATTTGCGTTGCATCTCTTGGACACGGAGCAAACGTCTATGTTTCCACTTCTCCGTCTAAACGTCCTCCTTGGAGCCCGATGCAGGAGACTGATCCTGAGCCCGACCCAGATGAAAGCACCCAGGCGGTGTTTACACTGAATTACCCCCGCATTCAGATCCCCTTCGAGGTTACTGTATGGGTGCTGCTTGCGTCCTTCGCCAAAATAGgTTTCAATGTTTACCATAAGATCACGGTCTGGGTGCCAGAGTCATGTTTGCTGATCTCCATCGGTCTCATAGTCGGGGGCGTCATGCACTCGTTGCACGAGAAGCCTCCAGCGGTGCTCACCTCCGACGCCTTTTTCCTCTATATGTTGCCACTCATTGTTCTAGACTCGGGCTACTTCATGCCCACTCGGCCCTTCTTTGAGAACTTCGGCACGGTGCTGTGGTTCGCTGTGGTCGGCACCTTGTGGAATTCTGTCGGCATTGGCATCTCTCTGTTTGCCATCTGCCAGATCGAGGCGTTTGGTGTGCAGGACATTACCCTGCAGGAGAACTTCCTCTTCGCCTCCATCATCTCAGCCGTGGAACCGGTGGCTGTTCTCACTGTGTTTGAGGACATCAGCGTCCATGAGCAGCTCTACATTGTGATATTTGGAGAGTGCCTGTTCAACGATGCTCTCACTGTGGTGCTCTATAAACTTTTCAGTCATGTAGCAGCAGTGGAGGTGGTTGAAGCCGGATTAGTTTTTCTGAACATAGGTCGATTTTTTGTGGTGGGTTTAGGTGGAATGATTTTCGGCGTGGTGTTCGGCTTCATGGCAGCCTTCACCACACGTTTTACAGGAAAAGTGCGAGAGATCGAGCCTCTAATCATCTTCCTGTACAGCTACCTGGTCTACCTCATAGCTGAGCTCCTTGCCGTCTCCAGCATCATGGCTATTGTAGTCTGTGCCTTGACTATGAAGTATTACGTTGAGGAGAATGTATCCCAGCACTCCTGTACTACTGTTCGGCATGTCATTAAGATGATTGGAAGCATGTCGGAAACTCTGATCTTCTTCTTTCTGGGTGTTGTTACCATAACAACGGAGCACGAGTGGAACTGGGGCTACATCCTCTTTACTCTGCTGTTTGCTCTTCTTTGGAGAGTCCTTGGCATCCTGGTCCTAACGCAGATCATTAACCCCTTCCGCACGATTCCTTTCAACTTCAAGGATCAGTTTGGTTTGGCCTATAGCGGGCTGAGAGGAGCTGTGTCCTTTGCCTTGGCCTTCACTCTCCCAGACAGCGTTGGTCGCAAGAAGCTGTTCATCACAGGCACGATTGTCGTCATCCTCTTTACAGTGTTCATTCAGGGTATTACTATAAGACCCCTTCTAAAATTAATGAATGTTCGTAAGACAAACAGAAACCTGGAGACCATCAATGTAGAGATTCACAAAAGGTTAATGGAGCACACTGTTGCTGGTATAGAAGATCTTTGTGGACAATGGGGTCACTACTACTGGAAAGACAAGTTCATGAAGTTTAATAACCGGATCATTCGCAAGATTTTAATCCGTGATAATCGTCCCGAGTCGAGCATTGTGTCTCTGTATAAGAAACTGGAGCTTCAGAACGCCGTGGAGATACTGGACCAAATGTCCGGAGACATCAGCGCTGCCCCCTCTTTACTTTCAATGCAtgaagaaagaaagattgcCTTCAAGTCCAGGAGGAAGTTCTTGTCGTCTGATGTGACAAATATGCATGAACTCTTATCAAAGAACATGTACAAGATCAGACAGAGGACAGTGTCTTACACTAATAAGCACACATTACCCAATGAGATGACAGCCAGGGAGATCCTGATGAGACGCCACACAAGCTTACGACGCAGCTTCAGAGCTGGAAGCTTCCACGGCACTAATGCTGCAAAAATGTCCCAGAAGTATTTCTCTCTGCCCACGGGCGGGAGTCTGAACTCTGGATTTCCTCCAGCGAGGCTCGTACACACCGGAGATGATGAATCGGAGCTCGACTGCCCGTCAAACAGGCGTCCACATAGAATGTCATGCAAAGCAGCGATGCCTCTCAGGCCGTTAAGCACTCTGAAGGAAGTCAAGACAGGAAGTGAACAGAAGGAGGAGCATAGAGGCTACGGGAGGTCACAcctggggtcaaaggtcagccgTCCTGGACTTCTGACCTCACGTCTGCCTCCTGGCTCGTCTAGAAACTATAGTGATGACGACTGCGAGGGTGAGGAGCAGCAATCACGGTCGTCTCTACGTGGCTGGGTACAGGAACCGCAGCACAGCAGTGATGTGCAGCACTCTTTGATGAGGAGACCACGCTGACTGCCACAGAAACCATGGGACAAATGAGTTCACTGTAGTGCTGGGGCACTATGACTTGTGCAGTTGATCTCACCACTTTGCAAGAAACacataaacactaaaaagaCTAGATACTAGAATGTACTAGATATACTAGTCGCAAAATGTAAGAACTTTACACTAAAATCTTTTTATGACACTACAGCTATCAGAAATCGCAATGTTcagtatatattaatgttacattttgatGATATTGGATAAATTGGgtgcatttatatgttttacagataaataaaaaattgcaaaggaaactaaaatatttctttccacATTATAAGCAATTAATTCATGGGAGTtcaatttctatatatatatacacacataacattaattttgtattaatcttgctgtaaaatatacataaatatgaaagtataatatattatcaGAACAATCGGTGTGAGATAATTTTTCTCAGGAATGCAGTGCATACTCTTAAAatgaactataaaaaaataacaacagcagGATTTTGTGTATGCTCAAgcttcttttattaaaataaagtattgcgTTCTTACACAAAAATCTGTGTGATACTTAAACATGAACTTGGTATTTCTGACGGTAACAAAAAAccctacatttaaaataataattgtaaatacatAGATCGATTCAGacgataataaaaataagataacaTTTCCCGCACATAGACAACAAATGTTTGgtgtcagtaatattttataatgtggttgttgtgttttttttaatagctcgCTTATAcacaccaagactgcatttagttgatcaaaatacattaaaaacagtaatgttgaatgaaatattactacaa

Function

NR:

description
sodium/hydrogen exchanger isoform 2 precursor

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0042539 hypotonic salinity response biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015385 sodium molecular_function

KEGG:

id description
K14722 SLC9A2, NHE2; solute carrier family 9 (sodium/hydrogen exchanger), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248360.1 True 3578 mRNA 0.43 12 7106559 7117477

Neighbor

gene id symbol gene type direction distance location
tmem182a tmem182,tmem182a,LOC107721587,LOC107551067,LOC107602887,LOC107716770,LOC107676521 coding downstream 8767 7093903 ~ 7097792 (-)
pou3f3a pou3f3a,pou3f3,LOC107716796,LOC107688731,LOC107602909,LOC107721578,LOC107676544 coding downstream 115791 6987723 ~ 6990768 (-)
gpr45 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 coding downstream 131651 6969817 ~ 6974908 (-)
c9h2orf49 LOC107716774,LOC107688774,LOC107721580,LOC107676461,LOC107551065 coding downstream 137352 6965229 ~ 6969207 (-)
nck2a nck2a,LOC107602910,LOC107688727,LOC107721610,LOC107676443,LOC107551075,LOC107716798 coding downstream 163117 6896477 ~ 6943442 (-)
mgat4a mgat4a,LOC107721595 coding upstream 37502 7154979 ~ 7194511 (-)
creg2 creg2,LOC107716793,LOC107721575,LOC107602906 coding upstream 78638 7196115 ~ 7200021 (-)
cracdla kiaa1211l,LOC107602905,LOC107688737,LOC107602875 coding upstream 82793 7200270 ~ 7214956 (-)
mitd1 mitd1,LOC107688779,LOC107668392,LOC107721562,LOC107721614 coding upstream 97536 7215013 ~ 7218008 (-)
slc23a3 LOC107688765,LOC107716759,LOC107602874,LOC107721561 coding upstream 130542 7248019 ~ 7256613 (-)
LOC122352164 NA non-coding downstream 71198 6982678 ~ 7035361 (-)
LOC122351994 NA non-coding downstream 211162 6892652 ~ 6895397 (-)
G68357 NA non-coding downstream 223583 6882585 ~ 6882976 (-)
G68328 st6gal2a,LOC107676409,LOC107721598,LOC107688722,LOC107551073,LOC107602911,LOC107716800 non-coding downstream 293544 6809848 ~ 6813015 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding downstream 312184 6793402 ~ 6794375 (-)
G68473 NA non-coding upstream 210352 7327829 ~ 7341494 (-)
G68489 NA non-coding upstream 263813 7381290 ~ 7381508 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding upstream 697772 7815249 ~ 7818832 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding upstream 702531 7820008 ~ 7821889 (-)
LOC122352023 NA non-coding upstream 1353386 8470863 ~ 8474578 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 845490 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 1006647 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 1062634 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 1175423 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 1706679 5396865 ~ 5399880 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 896972 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 958991 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 2790711 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3316030 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 3397795 10515272 ~ 10519457 (-)

Expression


Co-expression Network