plcd4b (plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071)


Basic Information

Item Value
gene id plcd4b
gene name plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18635106 ~ 18642486 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248379.1
AAAGGAAAAGTGGGAGTGTCTAGGAAGGAAAGAGGCAGAGGAAGGGGTGTAAGAATGAGGCTGGCTATGCATCACAGTGAAAGGAGCCTAGACTGCGGTTCTGTTTTCCCAGCACTTCGCACACAGCAGCCAAAGCCCATCCTCCCCGATTAGCTCTTTTCCACCAGATGTCAGTTCATTGGATGTCTTTTAATCTGAAAAGGTGAACTATTAGAAAATGGAATCACCTCAAACATGTGAACAGGGTAATCAAAACCTTAAAGCCATGAAGGCAGGCACGTTGCTGCGCAAAGTGAAGTCTCGTATGTGGAAGCGGCAGCGGCACTACAAGCTTCAGGAGGACTGCAAAACGATTGCATATAAATCCAGCTGGGCAATAAACTCTTATTCTACCTtctccATCAGTGATGTAGAGGCAGTTCGTGAGGGACATCAGTCTGAGGCGCTCCTCGGTGTGGCAGATGAGTTTTCCGCTGACCGCTGTTTCACACTAGTGTTTCGCGGCCGTAAAGGAAAGCTGGACCTGGTGGCTGATTCAGCAAAGGAAGCTCAGGCATGGGTTCAGGGCATCAGAGCCCTCATGGAGAACATGGAGAACATGGATGAGAACACCAAACTTGACCACTGGATCTCAGACTGGTTTTTGAAAGCTGATCTAAACAAGGATGGCAGAATTAATTTTAAGGAGGcaaaaaaattgctgaaaatgatGAACGTGGACATGAATGAAGAACATGCATGCTGTCTTTTTGTGATGGCGGATAAGTCCGAGTCAGGAACCCTGGAAGATCAAGAGTTTGTAGAGTTTTATAAAATGCTTACTGAGAGATCAGAGGTGCTGGAGTTATTCCAGGATTATTCCAGTGATGGACAGAGTCTATCCCAGTGTGATCTGGAGGAGTTCCTGAGAGAGGAGCAGCTAGAGGGGGAGGGCAGTTATGAGCATGCCCTTCAGCTGATCGATCGCTATGAGCCTTCAGACACAGCCAGAATGAATCACATGATGTCAGTCGATGGTTTCTTAATGTACCTGACGTCTCCTGAGGGATCTATCTTCAGTCCAGATCGACAGGACCTTTTTCAGGACATGAGTCAACCTCTTGCCCATTATTACATCTCCTCATCTCACAACACTTATCTGATGGAGGACCAGCTAAAAGGACCAAGCAGCGTGGAGGCCTACATCCAGGCGCTGAAACGAGGCTGCAGGTGTGTAGAGGTGGACTGCTGGAACGGATCGAATGGGGAGCCGGTGGTTTATCATGGACACACACTGACATCTAAAATTCTCCTCAAAGATGTGATCACTACTATTGCAAATTATGCCTTCAAGGCATCTGAGTATCCACTCATTTTGTCCATTGAAAACCACTGCAGCATAGAGCAACAGGAAGTCATGGCTCGATATTTCAGAGACATTTTGGGTGATATGCTACTCACAAACACAGTAGATGGAGTCTCCGGCGTACTGCCATCCCCAGAGGCACTTAAAAGGAAAATCCTGTTAAAAGGGAAGAAGATTGACAACGAGTCGGAGAACCCCACAGGTGAAGTCAGCGATGAGGACGAGGCAGCGGAAATGAATAAAGACAGTCCAGTAATGGAGAGTGCACCAGCAAATGTCAAgAAATCGAAGCAAAATCTATGCAAGGAGCTCTCAGACCTGATGTTCTGTAAGAGTGTACATTTCCACAGCTTTGAGCATTCCTGCAGCTCTGCTAAGCCTAATGAGATGTCATCGTTCTCTGAGTCTAAAGCCCGAAAATATGCAAAGGAAGCAGGTTCAGAATTTGTGCTGCACAACACCAGGCAGCTGACAAGAGTGTATCCAAGCGGAATGAGGACTGATTCATCAAATTACTGTCCAGTAGACATGTGGAACATGGGATGCCAGATTGTGGCATTAAACTTCCAGACAGCTGGGATGGAAATGGACCTTAATGATGGGTTGTTTACTCAGAACGGCTGCAGTGGTTACATCCTAAAACCTGAGATCCTTCGCAAAAAAGAGAGACTCTTTGATCCTGAAAATCCTGAAGAACGTGATGATTACCACCCTATACAGTTTTATGTTAAGGTTATCAGTGGACAACAGCTCCCTAAAGTAAAGCAAAAAGACTGGTCCATTGTAGACCCTCTGGTAAGGGTGGAAATTTATGGTGTTCCTTTGGATCAAGCCAAACAGGAGACCAAACACATTGACAACAATGGGTTTAACCCACATTGGAATGAATCGTTACAGTTCACAATCCACACCCCTGAGCTGGCACTGGTGCGTTTTGTAGTTGAAGACTATGATACAGCATCAAGGAATGACTTCATAGGGCAATACACTATACCTTTTACGTGTATTCAACCAGGATATCGTCATGTGCATCTGTTGTCCAAAGACGGAACGAGTATCCAGCCATCCTCCATCTATGTTCATATCAAAATCAGAGAGCTGTAATTCTAGGTGCTCACAATTCCAgtagttttatttacaatactTAAACATTTCCCAGACAAATCTGTAGTTTACTGTTAAACGTTTACCTTGTGCTTTGCTTAAAAATACTTGAACAAATGCTGGCAATCACTTGAAAAcaccaaaacattatttaatcacTAATTCTTGCATTAGAACAAAAAAGTATATCAACTAGCAATATTTCTTAAGAGTACCTCTATAGTAGTTGCATGGTATTAGTAGTGCCTTGTTGTCAAAATAGAACTCTAAGTGCGGTGCAGAATTTTATTTGTAGTTGTTTATCTATGCAATACTCAGTGTACcgttaaccaaaaaaaaaaatcaaatgcaagGTTATACAGTCAGGGCAGAATATCCATCCTTAAGGCTGTACATTATCTGAATTAATGGAATGGAGCATGGTTAAGTGCCTTTCATAAATAACCCAAAAGCAAGTGTTTGAAGTAAATAACTGCATATTGTCATTATGTATGTACTCGTCCaggtaaatattgttttttttaatgaaaatgccatttaaagGAATAACCAGGTATAACagcaacaataaatatattgtaaaaatctt
>XR_006251742.1
GGAAAGGAAAAGTGGGAGTGTCTAGGAAGGAAAGAGGCAGAGGAAGGGGTGTAAGAATGAGGCTGGCTATGCATCACAGTGAAAGGAGCCTAGACTGCGGTTCTGTTTTCCCAGCACTTCGCACACAGCAGCCAAAGCCCATCCTCCCCGATTAGCTCTTTTCCACCAGATGTCAGTTCATTGGATGTCTTTTAATCTGAAAAGGTGAACTATTAGAAAATGGAATCACCTCAAACATGTGAACAGGGTAATCAAAACCTTAAAGCCATGAAGGCAGGCACGTTGCTGCGCAAAGTGAAGTCTCGTATGTGGAAGCGGCAGCGGCACTACAAGCTTCAGGAGGACTGCAAAACGATTGCATATAAATCCAGCTGGGCAATAAACTCTTATTCTACCTtctccATCAGTGATGTAGAGGCAGTTCGTGAGGGACATCAGTCTGAGGCGCTCCTCGGTGTGGCAGATGAGTTTTCCGCTGACCGCTGTTTCACACTAGTGTTTCGCGGCCGTAAAGGAAAGCTGGACCTGGTGGCTGATTCAGCAAAGGAAGCTCAGGCATGGGTTCAGGGCATCAGAGCCCTCATGGAGAACATGGAGAACATGGATGAGAACACCAAACTTGACCACTGGATCTCAGACTGGTTTTTGAAAGCTGATCTAAACAAGGATGGCAGAATTAATTTTAAGGAGGcaaaaaaattgctgaaaatgatGAACGTGGACATGAATGAAGAACATGCATGCTGTCTTTTTGTGATGGCGGATAAGTCCGAGTCAGGAACCCTGGAAGATCAAGAGTTTGTAGAGTTTTATAAAATGCTTACTGAGAGATCAGAGGTGCTGGAGTTATTCCAGGATTATTCCAGTGATGGACAGAGTCTATCCCAGTGTGATCTGGAGGAGTTCCTGAGAGAGGAGCAGCTAGAGGGGGAGGGCAGTTATGAGCATGCCCTTCAGCTGATCGATCGCTATGAGCCTTCAGACACAGCCAGAATGAATCACATGATGTCAGTCGATGGTTTCTTAATGTACCTGACGTCTCCTGAGGGATCTATCTTCAGTCCAGATCGACAGGACCTTTTTCAGGACATGAGTCAACCTCTTGCCCATTATTACATCTCCTCATCTCACAACACTTATCTGATGGAGGACCAGCTAAAAGGACCAAGCAGCGTGGAGGCCTACATCCAGGCGCTGAAACGAGGCTGCAGGTGTGTAGAGGTGGACTGCTGGAACGGATCGAATGGGGAGCCGGTGGTTTATCATGGACACACACTGACATCTAAAATTCTCCTCAAAGATGTGATCACTACTATTGCAAATTATGCCTTCAAGGCATCTGAGTATCCACTCATTTTGTCCATTGAAAACCACTGCAGCATAGAGCAACAGGAAGTCATGGCTCGATATTTCAGAGACATTTTGGGTGATATGCTACTCACAAACACAGTAGATGGAGTCTCCGGCGTACTGCCATCCCCAGAGGCACTTAAAAGGAAAATCCTGTTAAAAGGGAAGAAGATTGACAACGAGTCGGAGAACCCCACAGGTGAAGTCAGCGATGAGGACGAGGCAGCGGAAATGAATAAAGACAGTCCAGTAATGGAGAGTGCACCAGCAAATGTCAAgAAATCGAAGCAAAATCTATGCAAGGAGCTCTCAGACCTGATGTTCTGTAAGAGTGTACATTTCCACAGCTTTGAGCATTCCTGCAGCTCTGCTAAGCCTAATGAGATGTCATCGTTCTCTGAGTCTAAAGCCCGAAAATATGCAAAGGAAGCAGGTTCAGAATTTGTGCTGCACAACACCAGGCAGCTGACAAGAGTGTATCCAAGCGGAATGAGGACTGATTCATCAAATTACTGTCCAGTAGACATGTGGAACATGGGATGCCAGATTGAACGGCTGCAGTGGTTACATCCTAAAACCTGAGATCCTTCGCAAAAAAGAGAGACTCTTTGATCCTGAAAATCCTGAAGAACGTGATGATTACCACCCTATACAGTTTTATGTTAAGGTTATCAGTGGACAACAGCTCCCTAAAGTAAAGCAAAAAGACTGGTCCATTGTAGACCCTCTGGTAAGGGTGGAAATTTATGGTGTTCCTTTGGATCAAGCCAAACAGGAGACCAAACACATTGACAACAATG

Function

symbol description
plcd4b Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within several processes, including acrosome reaction; intracellular signal transduction; and phosphatidylinositol metabolic process. Predicted to be located in endoplasmic reticulum and nucleus. Orthologous to human PLCD4 (phospholipase C delta 4).

NR:

description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like

GO: NA

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248379.1 True 3038 mRNA 0.43 16 18635108 18642486
XR_006251742.1 False 2150 transcript 0.46 14 18635106 18641180

Neighbor

gene id symbol gene type direction distance location
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632,LOC107596072,LOC107714379 coding upstream 8692 18620886 ~ 18626414 (+)
nifk nifk,LOC107741903,LOC107660635,LOC107555919,LOC107714465,LOC107580417 coding upstream 85717 18546236 ~ 18549389 (+)
LOC122352188 NA coding upstream 86499 18548481 ~ 18548607 (+)
LOC122352186 NA coding upstream 87824 18547160 ~ 18547282 (+)
cacnb4a cacnb4,cacnb4a,LOC107660636,LOC107741900,LOC108434427 coding upstream 98055 18518212 ~ 18537051 (+)
LOC122351849 bcs1l,LOC107741911,LOC107555925,LOC107673730,LOC107714219 coding downstream 6726 18649212 ~ 18652922 (+)
LOC122351848 cyp27a7,LOC107741910,LOC107660625,LOC107714212,LOC107660626,LOC107555927 coding downstream 10585 18653071 ~ 18657710 (+)
LOC122351850 LOC107555927,LOC107660626,LOC107741910,LOC107714212,LOC107660625,LOC107596087 coding downstream 17279 18659765 ~ 18662870 (+)
LOC122351791 LOC107555929,LOC107660624,LOC107741913,LOC107714185,LOC107673745,LOC107596074 coding downstream 20865 18663351 ~ 18674738 (+)
lss lss,LOC107714200,LOC107673746,LOC107660663 coding downstream 32665 18675151 ~ 18682202 (+)
G71334 NA non-coding upstream 91108 18543774 ~ 18543998 (+)
G71333 NA non-coding upstream 93770 18540883 ~ 18541336 (+)
G71331 NA non-coding upstream 96406 18538480 ~ 18538700 (+)
G71221 NA non-coding upstream 604558 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 992668 17641910 ~ 17642438 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 105425 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 247437 18889923 ~ 18893969 (+)
G71457 LOC107662043,LOC107555909,LOC107741926,LOC107556197,LOC107660610,LOC107721020 non-coding downstream 337827 18980313 ~ 18985811 (+)
G71509 NA non-coding downstream 608353 19250839 ~ 19251157 (+)
G71517 NA non-coding downstream 613544 19256030 ~ 19256233 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other upstream 15719 18611995 ~ 18619387 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other upstream 24178 18549936 ~ 18610928 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 670862 17736006 ~ 17964244 (+)
G71130 NA other upstream 1295484 17339127 ~ 17339622 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other upstream 1426886 17203797 ~ 17208220 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 40186 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 254116 18896602 ~ 18931462 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other downstream 870368 19512854 ~ 19543677 (+)
G71585 NA other downstream 978798 19621284 ~ 19621493 (+)
ormdl1 ormdl1,LOC107602148 other downstream 1066878 19709364 ~ 19714404 (+)

Expression


Co-expression Network