ddx18 (ddx18,LOC107673737,LOC107741906,LOC107660632,LOC107596072,LOC107714379)


Basic Information

Item Value
gene id ddx18
gene name ddx18,LOC107673737,LOC107741906,LOC107660632,LOC107596072,LOC107714379
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18620886 ~ 18626414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248380.1
TGAGCGAAGGACCCCACGCAGCACGCGCACACGTGTTTGTCTGCAGCCATGGCGGACATGCAGATGAAGATTCTCCGCAAGAAAATTCAGAagagaaatgataaaaataagcaaCGCAAGTTGCTCAGAGCtcagaaagaagaagaggaaaacgGCGAAgAGGTAAAAGTTGTGTTGGGCGAATCTGAAGTGACCAGTGATTCTGCTCCAAACGTCAGTGAAGAGCAGCAGGAAAGTATCTCCACAGAGGAGAACGAAACCTCACAGAAAactaagaaaaagaaaagaaaattggaTGGTGCAGGGGACGCAAAATCTAGTGTGAAAAAGGTCAAAAAGCAGGATGAAGTTAAAGAGACAACAGAAGCATCAGATGGAGAAGATGAGAAACAGGAGGAAGCTGCAGAGCCTGAAAAGTTGCCAGAAAATGGAAATGATGACCTAGAGGGttctgaggaggaggaggaggaggatgatgatgatgatagtgAAGACGATGGACCAGAACTTCCTTCTGGTCTCACAGGTGCGTTTGAGGACAGGTCATTTGCATCTTTGGCAGAAGTGGTCAGTGAGAATACACTGAAGGGAGTGAAGGAGATGGGCTTTGAAACCATGACTGAGATCCAGCACAAGACCATAAGACCTCTGCTAGAAGGAAGAGACGTGTTGGCTGCAGCTAAAACAGGAAGTGGTAAAACTCTGGCTTTTCTGATTCCCTCCATTGAGCTTATCTACAAACTCAAATTTATGCCCAGAAATGgAACTGGAGTGGTCGTATTGTCTCCCACTCGTGAGCTGGCCATGCAGACGTATGGTGTTCTAAAGGAGCTGATGACTTACCATGTGCACACATACGGCCTCATCATGGGTGGCAGCAACCGTTCTGCTGAAGCTCAGAAACTCGGCAATGGTGTCAATATTGTGATAGCTACACCTGGCAGACTTCTCGATCACCTGCACAACACACCCGGGTTCATGTTTAAGAACCTTCAGTGTCTGATCATTGACGAGGCTGATAGGATTCTAGAGGTTGGCTTTGAGGAAGAACTGAAGCAGATCATCAAACTGCTGCCTAaaaaaagacAGACCATGCTGTTCTCCGCAACACAGACGCGTAAGGTGGAGGATCTTGCGCGAATCTCCCTCAAAAAGGAGCCGCTGTATGTGGGGGTGGACGACAACAAAGACACAGCCACCGTGGAAGGACTAGAACAGGGATATGTCGTTTGTTCTTCTGAAAAACGTTTCCTGCTGCTCTTCACGTTTCTGAAGAAGAACCGCAAGAAGAAGCTGATGGTGTTCTTCTCGTCTTGCATGTCTGTGAAATACCATTATGAGCTGCTCAATTACATCGATCTGCCTGTCATGGCTATTCACGGGAAACAGAAACAGACGAAGAGAACCACAACGTTTTTCCAGTTCTGTAACGCAGACTCTGGCATTCTCCTCTGTACGGATGTGGCTGCCCGAGGTCTTGATATCCCAGAGGTGGACTGGATTGTTCAGTATGACCCACCCGATGATCCAAAGGAGTACATCCACCGCGTGGGACGAACAGCTCGTGGTATTAATGGTAGAGGACATGCCCTCCTGATCCTAAGACCAGAGGAGCTTGGCTTTTTACGATTTCTCAAACAGGCAAAAGTCCCTCTGAGTGAGTTTGAATTCTCCTGGGCTAAAATCTCTGATATTCAATCTCAGTTGGAGAAGCTGATAGAGAAGAACTACTACCTTCACAAATCGGCTCAGGAGGCCTACAAATCCTACGTCAGAGCTTATGACTCGCATTCCCTCAAACAAATCTATAATGTAGAAACGCTCGACCTCCCGAAAGTGGCATCGTCCTTTGGGTTTAAAGTGCCACCTTTTGTGGACCTCAACGTTCACAGCAGTAAAGGGGTGAAGCTGCAGAAGCGAGGTGGTGGTGGAGGCTTTGGCTACCAGAAATCTAAGAACGTCCACAAGGCCAAGATCTTCAAACACGTCGATAAAAGGAAAGGAGATGGTAGACAGTTCTCACGCTGAGAATAAGTAAATATGCCTTGTGATGCACCTCTATGTGGAGTATCTGTCAGACTGCACAACTGTCATTTAGTTAATTTGTTCTCAGTCATTTGAGAAGAGCTCTGATCAGTCTGCATTCCATGCCTGTACAGAAATCTGTTTTCAGAAGTCGTTATATAATGCTGAATTTCTATTGTTACTGGCCCAACTCATTAAATTTAGAACCTTGTATTATGAATAATTCTTCATGCCGTCTGCTCTCTACACGTGAGGTTGAACCAACAACCGTAGTGGCAACCAGAGTTTGATAGATCAGacttttgattttcatttatgtattttttcaaataGACGACATTTTCCATACTGTTTTACAGAATAGAACATCTTGAGAAAGATCTTTATTTATGCAACAATGTAACAACAATGCTtgcttttaaagattaaaataaatgtaaaatgccacacaaattgtgtgtgtgggggagagagagagatgcaaaaGGAATTGACATACTAGTTAATACCCAAAGAACAATGTGTGACCCTGACCCAaaaggttaatattttttaaattgagatttataaatCATCTGAAAGCCGGGATAATactctttccattgatgtatggttttttaaaatgtggcaGAGAACCTACTTGAAATTTGGGAATTAATTATTGAGAAAATCCACcttttaaagttgtctaaattaagttcttagcaaagcatattactaatctaaaaataagttttgatatttatggtaggaaatgtacaatatcttcatggaacataatggtcacttaatatcttaatgatttttggcagtggaaaatagattattttgatacatacattgcattttttgacatttctacCAATATACCCATGTAACTTattactggttttgtggtccagggtcacattcatattacatttttatccttatttatttttattaaatcaagaaaactcaaataaaaagcagaatATTAATAGTGATGAggtttgttcattttcatttaaatgtcctATATATTGCATAGTACTATGAACTGTGTAAGGCTGCCATCTTTAAAATGTGCACAACAATTGcaaatttcagttttaatctTATTTACAGGTTGAGGCAGTCTGAACTAAAGAGTCTAAGATGGCAGGCTGTTTTTACAATTACTGTATCGCATGACCTCGCTATAATCCTCTATAGTAAATaaatctgaccaatcagca

Function

symbol description
ddx18 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Acts upstream of or within myeloid cell differentiation. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; intermediate cell mass of mesoderm; nervous system; and trunk vasculature. Orthologous to human DDX18 (DEAD-box helicase 18).

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX18 isoform X2

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248380.1 True 3242 mRNA 0.41 14 18620886 18626414

Neighbor

gene id symbol gene type direction distance location
nifk nifk,LOC107741903,LOC107660635,LOC107555919,LOC107714465,LOC107580417 coding upstream 71497 18546236 ~ 18549389 (+)
LOC122352188 NA coding upstream 72279 18548481 ~ 18548607 (+)
LOC122352186 NA coding upstream 73604 18547160 ~ 18547282 (+)
cacnb4a cacnb4,cacnb4a,LOC107660636,LOC107741900,LOC108434427 coding upstream 83835 18518212 ~ 18537051 (+)
stam2 stam2,LOC107661142,LOC107596068,LOC107555917,LOC107714296,LOC107660637,LOC107741902 coding upstream 110860 18500302 ~ 18510026 (+)
LOC122351849 bcs1l,LOC107741911,LOC107555925,LOC107673730,LOC107714219 coding downstream 22798 18649212 ~ 18652922 (+)
LOC122351848 cyp27a7,LOC107741910,LOC107660625,LOC107714212,LOC107660626,LOC107555927 coding downstream 26657 18653071 ~ 18657710 (+)
LOC122351850 LOC107555927,LOC107660626,LOC107741910,LOC107714212,LOC107660625,LOC107596087 coding downstream 33351 18659765 ~ 18662870 (+)
LOC122351791 LOC107555929,LOC107660624,LOC107741913,LOC107714185,LOC107673745,LOC107596074 coding downstream 36937 18663351 ~ 18674738 (+)
lss lss,LOC107714200,LOC107673746,LOC107660663 coding downstream 48737 18675151 ~ 18682202 (+)
G71334 NA non-coding upstream 76888 18543774 ~ 18543998 (+)
G71333 NA non-coding upstream 79550 18540883 ~ 18541336 (+)
G71331 NA non-coding upstream 82186 18538480 ~ 18538700 (+)
G71221 NA non-coding upstream 590338 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 978448 17641910 ~ 17642438 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 121497 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 263509 18889923 ~ 18893969 (+)
G71457 LOC107662043,LOC107555909,LOC107741926,LOC107556197,LOC107660610,LOC107721020 non-coding downstream 353899 18980313 ~ 18985811 (+)
G71509 NA non-coding downstream 624425 19250839 ~ 19251157 (+)
G71517 NA non-coding downstream 629616 19256030 ~ 19256233 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other upstream 1499 18611995 ~ 18619387 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other upstream 9958 18549936 ~ 18610928 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 656642 17736006 ~ 17964244 (+)
G71130 NA other upstream 1281264 17339127 ~ 17339622 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other upstream 1412666 17203797 ~ 17208220 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other downstream 8692 18635106 ~ 18642486 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 56258 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 270188 18896602 ~ 18931462 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other downstream 886440 19512854 ~ 19543677 (+)
G71585 NA other downstream 994870 19621284 ~ 19621493 (+)

Expression


Co-expression Network