ccdc93 (ccdc93,LOC107741907,LOC107555923,LOC107596073,LOC107714249)


Basic Information

Item Value
gene id ccdc93
gene name ccdc93,LOC107741907,LOC107555923,LOC107596073,LOC107714249
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18626417 ~ 18633604 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248381.1
ACGTGACACATCGTGATCGGATCATCATGGCGGCCACCTCTGTGTTCCAGAGAGTGAGAACAGGCTCGAAAATAGGAGCCCAATATGATCAGGAGGGCAATCTCATCAAGGTGGAGACACGTGAGGATGAGGAGCAGAGTGTCAAGCTTGCCGAGATTTTGGAGTTGTTGCTCGCTGCTGGTTATTTCAGAGCACGCATTAAGGGACTGTCACCTTTTGACAAGGTGGTTGGAGGAATGACCTGGTGTATAACTACTTGCAACTTTGACATAGACGTTGATCTGCTTTTCCAAGAGAATTCCACCATTGGTCAAAAAATTGCTCTGACAGAGAAGATTGTGTCAGTTCTGCCCAAAATGAAGTGTCCTCACCGTTTAGAGCCTCATCAGATCCAAGGGTTGGATTTCATCCACATCTTTCCTGTTGTACAATGGCTTGTAAAGAAGGCGATTGAAACCCGGGAGGAGATGGGAGATTATGTCAGATCATATTCCATTTCTCAGTTTCAGAAAACGCATGCATTTCCTGAGGACGAGGAGTTTGAAGTAAGGAAGGAGAGAGCAATCAGTACTGTGgtgaacgtgtgtGGGGTTTATGCTCCTCAGAGGCGCTATAAACGTCAGGTGGATGCTGGAGAGCTGCTGGATGAAGAGTCTCGGGTTCATTCTACCTTGCTGGAGTTTGGCAGTCCGTGCCTTCTCATATCACAATACATGCAgcGCTATGGATTCAGCAAACAGTCCAAAGCTGGCACTGCAGTGGAGCAGAAGCAGGTGTTGGCTCAGGGCACGCAGGGTGTGCCTCCTGGAATGGCCCAGGTGTCTGAAGAGGAGGATCTGCAGGCGGCAGAAGAGCTCAGAATCAAAGCCTTAATGACTGGAAtggctgccatggcaacagagGAGgggaAGCTGTCAGCCAGCACAGTGGGGCAGATTGTTGGACTGCAGTCTGAGGAGATCAAGCAGATTGCCACTGAATATGCAGAGAAGGCGGAGCGCTCCGTGGAGGATCGGCCGGAAAGGTTTGGACCTGCGCAGCAACACAGGCGTCAACTGGCATCTCTCAACAAACAAATtactcaaaaaacaaaagagcttGAAGAGCTGCAATCCAAACAGCAGGAAGCCAGAACAGCATGTGAGGACGCTAAAATCAAACTAGCTGAGgCCACAGCTCAGACTGAAAAGCTGGAGAGAGAGCTGAACTCATTGGAGGACGTGGAGTCTCAGGCAGATTCTGGgttaCTGGAGAAGCTTCGTGCTTTGGTGGCCATGAACGAAAGCCTCAAACATCAAGAGCAAACGTTCCGCTCGCACTGTCGCGAGGAAATGACCCGTCTTCAGCAGAATATTGAAGAGTTGAAGCTGGAGTATGGAGAAGAGGGAGATGAGAAGAAGGAGATGAACATGTTGATTGATCAGCAGTACACTGCAGACAGAGAAAAGCTGCAGAAGATCCGTTTGCTTATGGCTCGGAGAAACCGTGAGATCGCAATCCTGCAGAGAAAGATTGATGAGGTTCCCAGCAGAGCTGAGCTGACCCAGTATCAGAAACGCTTTATTGAGCTGTACAGCCAAGTTTCTGCAACGCACAAAGAGACAAAACAGTTCTTCACGCTCTACAACACACTAGATGACAAGAAGGTTTACCTGGAGAAAGAGGTCAATCTGTTGAACTCCATACACGATCATTTCCAGCAagCCATGGCTTCGTCAGGAAGTAAAGAACAGTTTCTTAGACAAATGGAGCAAATTGTGGAAGGAATCAAACAGAGTCGCATAAAGatggaaaagaaaagacagGAGAATAAGATGCgcagagatcagctgaatgatGAGTACTTGGAGCTGTTGGATAAACAGAGGCTCTACTTTAAAACCGTCAAGGACTTTAAAGAGGAGTGCCGCAAGAATGAGATGCTGTTGTCTAAACTGAGGGCAAAGGGAGCGTCGTAACAGCTGGATTGGCACACACCCTGCCTTTAATACACAACTCCCAAGTAGCACTTCAAAATACTCTTCACATTCCCTGATGTTGGTGTTTCATTGCAGTACAGCCATCTTCTTTCAGATTGAAACACTCTGTTGTtcggtatgtgtgtgttaacCTGGATTCTTCTAGGTTCAGAGATGAAGCATGTAACTTGTGTAATATTAAACTGGAAATGTTTTGTGCCTTGATATCACCTTATTTAAAACCGTAATGTATATAACACAAACTCCCTTACTAATCGCCTTTGTTTTTGTATCAAGATCATGCTGCCATAAgacattaaaagacaaatgaaCTA
>XM_043248382.1
ACGTGACACATCGTGATCGGATCATCATGGCGGCCACCTCTGTGTTCCAGAGAGTGAGAACAGGCTCGAAAATAGGAGCCCAATATGATCAGGAGGGCAATCTCATCAAGGTGGAGACACGTGAGGATGAGGAGCAGAGTGTCAAGCTTGCCGAGATTTTGGAGTTGTTGCTCGCTGCTGGTTATTTCAGAGCACGCATTAAGGGACTGTCACCTTTTGACAAGGTGGTTGGAGGAATGACCTGGTGTATAACTACTTGCAACTTTGACATAGACGTTGATCTGCTTTTCCAAGAGAATTCCACCATTGGTCAAAAAATTGCTCTGACAGAGAAGATTGTGTCAGTTCTGCCCAAAATGAAGTGTCCTCACCGTTTAGAGCCTCATCAGATCCAAGGGTTGGATTTCATCCACATCTTTCCTGTTGTACAATGGCTTGTAAAGAAGGCGATTGAAACCCGGGAGGAGATGGGAGATTATGTCAGATCATATTCCATTTCTCAGTTTCAGAAAACGCATGCATTTCCTGAGGACGAGGAGTTTGAAGTAAGGAAGGAGAGAGCAATCAGTACTGTGgtgaacgtgtgtGGGGTTTATGCTCCTCAGAGGCGCTATAAACGTCAGGTGGATGCTGGAGAGCTGCTGGATGAAGAGTCTCGGGTTCATTCTACCTTGCTGGAGTTTGGCAGgcGCTATGGATTCAGCAAACAGTCCAAAGCTGGCACTGCAGTGGAGCAGAAGCAGGTGTTGGCTCAGGGCACGCAGGGTGTGCCTCCTGGAATGGCCCAGGTGTCTGAAGAGGAGGATCTGCAGGCGGCAGAAGAGCTCAGAATCAAAGCCTTAATGACTGGAAtggctgccatggcaacagagGAGgggaAGCTGTCAGCCAGCACAGTGGGGCAGATTGTTGGACTGCAGTCTGAGGAGATCAAGCAGATTGCCACTGAATATGCAGAGAAGGCGGAGCGCTCCGTGGAGGATCGGCCGGAAAGGTTTGGACCTGCGCAGCAACACAGGCGTCAACTGGCATCTCTCAACAAACAAATtactcaaaaaacaaaagagcttGAAGAGCTGCAATCCAAACAGCAGGAAGCCAGAACAGCATGTGAGGACGCTAAAATCAAACTAGCTGAGgCCACAGCTCAGACTGAAAAGCTGGAGAGAGAGCTGAACTCATTGGAGGACGTGGAGTCTCAGGCAGATTCTGGgttaCTGGAGAAGCTTCGTGCTTTGGTGGCCATGAACGAAAGCCTCAAACATCAAGAGCAAACGTTCCGCTCGCACTGTCGCGAGGAAATGACCCGTCTTCAGCAGAATATTGAAGAGTTGAAGCTGGAGTATGGAGAAGAGGGAGATGAGAAGAAGGAGATGAACATGTTGATTGATCAGCAGTACACTGCAGACAGAGAAAAGCTGCAGAAGATCCGTTTGCTTATGGCTCGGAGAAACCGTGAGATCGCAATCCTGCAGAGAAAGATTGATGAGGTTCCCAGCAGAGCTGAGCTGACCCAGTATCAGAAACGCTTTATTGAGCTGTACAGCCAAGTTTCTGCAACGCACAAAGAGACAAAACAGTTCTTCACGCTCTACAACACACTAGATGACAAGAAGGTTTACCTGGAGAAAGAGGTCAATCTGTTGAACTCCATACACGATCATTTCCAGCAagCCATGGCTTCGTCAGGAAGTAAAGAACAGTTTCTTAGACAAATGGAGCAAATTGTGGAAGGAATCAAACAGAGTCGCATAAAGatggaaaagaaaagacagGAGAATAAGATGCgcagagatcagctgaatgatGAGTACTTGGAGCTGTTGGATAAACAGAGGCTCTACTTTAAAACCGTCAAGGACTTTAAAGAGGAGTGCCGCAAGAATGAGATGCTGTTGTCTAAACTGAGGGCAAAGGGAGCGTCGTAACAGCTGGATTGGCACACACCCTGCCTTTAATACACAACTCCCAAGTAGCACTTCAAAATACTCTTCACATTCCCTGATGTTGGTGTTTCATTGCAGTACAGCCATCTTCTTTCAGATTGAAACACTCTGTTGTtcggtatgtgtgtgttaacCTGGATTCTTCTAGGTTCAGAGATGAAGCATGTAACTTGTGTAATATTAAACTGGAAATGTTTTGTGCCTTGATATCACCTTATTTAAAACCGTAATGTATATAACACAAACTCCCTTACTAATCGCCTTTGTTTTTGTATCAAGATCATGCTGCCATAAgacattaaaagacaaatgaaCTA

Function

symbol description
ccdc93 Predicted to be involved in Golgi to plasma membrane transport. Predicted to be located in early endosome. Orthologous to human CCDC93 (coiled-coil domain containing 93).

NR:

description
coiled-coil domain-containing protein 93 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248381.1 True 2293 mRNA 0.47 24 18626417 18633604
XM_043248382.1 False 2263 mRNA 0.47 23 18626417 18633604

Neighbor

gene id symbol gene type direction distance location
si:dkey-219c10.4 LOC107741933,LOC108266238,LOC106586425,LOC102795313,LOC101468032,LOC107673728,LOC107660664,LOC107555910 coding downstream 81266 18534652 ~ 18545151 (-)
hacd2 hacd2,LOC107660639,LOC107741899,LOC107661144 coding downstream 126523 18494086 ~ 18499894 (-)
adcy5 adcy5,LOC107555914,LOC107661140,LOC107660638,LOC107596066,LOC107714401 coding downstream 133544 18427072 ~ 18492873 (-)
hspbap1 LOC107722869,LOC107661136,LOC107660643 coding downstream 420956 18197126 ~ 18205461 (-)
ralba ralba,ralb,LOC107746258,LOC107597482,LOC107596059 coding downstream 587749 18028354 ~ 18038668 (-)
znf142 LOC107741908,LOC107555924,LOC107660628,LOC107714222,LOC107596070,LOC107673749 coding upstream 8866 18642470 ~ 18649055 (-)
tgfbr2l si:dkey-101k6.5,LOC107660622,LOC107741917,LOC107555932,LOC107714146,LOC107673748,LOC107596078 coding upstream 75624 18709228 ~ 18720447 (-)
myl1 myl1,LOC107721018,LOC107673729,LOC107596080,LOC107660614,LOC107555938 coding upstream 251840 18885444 ~ 18890055 (-)
LOC122351886 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 coding upstream 346674 18980278 ~ 19249175 (-)
ikzf2 si:zfos-1425h8.1,LOC107741927,LOC107660609,LOC107662042,LOC107721023,LOC107556196,LOC107568511 coding upstream 626125 19259729 ~ 19285223 (-)
G71341 NA non-coding downstream 114889 18511173 ~ 18511528 (-)
G71339 NA non-coding downstream 116408 18508440 ~ 18510009 (-)
G71293 NA non-coding downstream 399630 18222314 ~ 18226787 (-)
LOC122352098 NA non-coding downstream 890498 17733203 ~ 17735919 (-)
G71194 NA non-coding downstream 933597 17665519 ~ 17692820 (-)
G71400 LOC107555927,LOC107660626,LOC107741910,LOC107660658,LOC107660625,LOC107578255,LOC107714212 non-coding upstream 20023 18653627 ~ 18654751 (-)
G71424 NA non-coding upstream 54894 18688498 ~ 18692089 (-)
G71471 znf148,LOC107673743,LOC107660621 non-coding upstream 104152 18737756 ~ 18742225 (-)
LOC122351248 NA non-coding upstream 278239 18911843 ~ 18972902 (-)
LOC122351981 NA non-coding upstream 618033 19251637 ~ 19254248 (-)
LOC122352185 NA other downstream 56535 18569755 ~ 18569882 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other downstream 260150 18251236 ~ 18366267 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 1104857 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 1370926 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 1736870 16886753 ~ 16889547 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 1086338 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 1162648 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 1200316 19833920 ~ 19852625 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other upstream 1247946 19881550 ~ 19893315 (-)
G71938 nab1,LOC107565022 other upstream 1855560 20489164 ~ 20503890 (-)

Expression


Co-expression Network