LOC122351360 (arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340)


Basic Information

Item Value
gene id LOC122351360
gene name arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12122231 ~ 12155973 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248390.1
AGCAGAAGCCTCATGCATGCACTAATGCTCGCACTTCTTCGAGAGACGTAGAGTTTGTGTCCCATGTGACTTGTACACTTCCTCCAAACGAtactttctctctgtctttgctGAAACAGGTTTTGAgcagttttttaacattttggaaTACGACAGAGAACCAGtatcaCAGCGATGCAGAAGCAGCCAGCAATGGTGCTTCCTGGAGCCGTTCAGATGAGAATAAAGAACTCTCAAAGCAGCTCCGGAGAGAGACTCAGCCAGACAAAGTCTATGGTCCTACCAGAACCTGACACACTACAGAAACCTATGAACCGTCACCGGAGGAACCAGTCTCAGCATAACGTTGAAGGCTCTGTCGGGCTGCAGACTATTTTAAAAGGAGAATATCTGAACAAAGCCAAAATTTCTGAAGGAGGAAAGAAATTACGGAAAAACTGGACTTCAACCTGGGTTGTTCTTTGCTCCAATCAGCTGTTGTTCTATAAAGAGAGCAAACAAGAAGCCGTCGCAAATTTGAAACCAGGTGGTAAACCAGATGGTGTGGATCTGTGTGGGGCTATAATCGAGTGGACAACAGAGAAATCCAGTCGAAACGTGATTCAGATAACCACCTCAAATGGTCATGAGTTTTTGCTGCAGGCGGATCACTTTCCAACCATCTCTAAATGGCACGATGCCATCAAGAAAGCAGCGGACAGTCTGTCGAGTGGAGCTGGAGGCCAGAGCTGTGGTAGAGCAGCCCTTCACAGGTCCAACAGCATAGAATGCTTGTCCAGACCAACCTGTGAACCCACCAAACCTAAATCGAAAGAGACCAAATCTGAACACAGACGCTCCATCATGTTCAAGCTGAATTACAGCGCCTCAGACAGCGCCGACAAGAATGGAGTTAAGAACAGACTGAAGAAGTTCATCTCCAGACGGCCCTCCATGAAAACGCTACAGGAGAAAGGCCTTATTAAAGACAGAGTGTTTGGATCTCACATACTGACCCTGTGTCAGAGAGAAACGACCACAGTGCCCAAATTTGTGAAGTTGTGTGTTGAGGAAGTAGAAAAGCGAGGCCTGGAGGCTGATGGGATATACAGGGTGAGCGGCAATCTGGCCATCATCCAGAAACTACGCTTCCTAGTTGACCAAGAGGAGGAGCTTGACTTGGGCGACAGCCAATGGGAGGACATCCATGTCATCACCGGAgcgctaaagatgtttttccGTGAACTGCCAGAGCCCCTGTTTCCCTTTCGTTTTTTCGACTTGTTTGTGGAAGCCATCAAAATTAAGGAGCCCACACAGAAGGTTcaagccttaaagaaactgATCCATCAACTCCCCAAACCCAACCACAACACCATGAAACTGCTCTTCCATCACCTGAGGAGagTCTTGAtgaaatcaaagaaaaacttGATGTCGACTCAGGGCATCAGCATTGTGTTTGGACCGACTCTCATGTGGCCCGAGTTTGAATCCGGGAACATGGAAGTCAATATGGTGTATCAGAATCAAATAGTGGAGTCCATTCTCATCGAATGTGTGGAGATCTTTGGGAGCGGAGGGCATGTAAAGTCAGCCCAGAATATTCTGGAAATaagaaactgaaaatgaaaaaaaaagaatgtgtgtttgtgtgtgtgctggctggatgttacaatGATGTAAAATTGTTGTTTCtgattttttcatatttgcttcttggaaaaaaaaaaaaaaa

Function

symbol description
arhgap15 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human ARHGAP15 (Rho GTPase activating protein 15).

NR:

description
PREDICTED: rho GTPase-activating protein 15-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0005543 phospholipid binding molecular_function

KEGG:

id description
K20637 ARHGAP15; Rho GTPase-activating protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248390.1 True 1717 mRNA 0.46 16 12122231 12155973

Neighbor

gene id symbol gene type direction distance location
arhgap15 arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340 coding upstream 35723 12046474 ~ 12086508 (+)
nepro si:dkey-22a1.3,LOC107733637 coding upstream 736237 11382392 ~ 11385994 (+)
tex30 tex30,LOC107663828,LOC107567637 coding upstream 740279 11379870 ~ 11381952 (+)
poglut2 kdelc1,LOC107567637,LOC107733631,LOC107675345 coding upstream 742809 11372926 ~ 11379422 (+)
stxbp5l stxbp5l,LOC107738516,LOC107663865,LOC107675353 coding upstream 749660 11263726 ~ 11372571 (+)
acvr2aa LOC107709421,LOC107673126,LOC107675352,LOC107601072 coding downstream 236313 12392286 ~ 12429356 (+)
med4 med4,LOC107724027,LOC107673119,LOC107601074,LOC107709409,LOC107675337 coding downstream 297153 12453126 ~ 12456128 (+)
htr2aa htr2a,htr2aa,LOC107673120,LOC107709424,LOC107601068,LOC107724025,LOC107675342 coding downstream 326201 12482174 ~ 12507487 (+)
esd esd,LOC107675365,LOC107601075,LOC107709410,LOC107724032 coding downstream 358323 12514296 ~ 12518069 (+)
rubcnl rubcnl,LOC107709411,LOC107673128 coding downstream 398640 12554613 ~ 12560394 (+)
G69518 NA non-coding upstream 112309 11979781 ~ 12009922 (+)
G69483 NA non-coding upstream 698914 11420205 ~ 11423317 (+)
G69459 NA non-coding upstream 876753 11245151 ~ 11245478 (+)
G69417 armc8,LOC107733643,LOC107663904,LOC107551954 non-coding upstream 921066 11200651 ~ 11201165 (+)
G69403 NA non-coding upstream 1031797 11063601 ~ 11090434 (+)
G69539 NA non-coding downstream 43961 12199934 ~ 12200597 (+)
G69578 NA non-coding downstream 166278 12322251 ~ 12322532 (+)
G69625 NA non-coding downstream 301291 12457264 ~ 12457498 (+)
G69659 LOC107709425,LOC107724026 non-coding downstream 362316 12518289 ~ 12526873 (+)
G69706 NA non-coding downstream 509039 12665012 ~ 12724840 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other upstream 632082 11465604 ~ 11490149 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other upstream 1091822 11021736 ~ 11030409 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 1727001 10328731 ~ 10395230 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 1947448 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 2008875 10092350 ~ 10113356 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 279015 12434988 ~ 12452365 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 471562 12627535 ~ 12629535 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other downstream 576325 12732298 ~ 12803408 (+)
G69755 NA other downstream 828895 12984868 ~ 12985978 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other downstream 1133720 13289693 ~ 13304591 (+)

Expression


Co-expression Network