tnfaip6 (tnfaip6,LOC107723653,LOC107658287,LOC107677671,LOC107555349,LOC107725226)


Basic Information

Item Value
gene id tnfaip6
gene name tnfaip6,LOC107723653,LOC107658287,LOC107677671,LOC107555349,LOC107725226
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13913874 ~ 13921597 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248404.1
AAAAGTCGGTTTGGTCACGTCCTGTATATATTCCACAGAGTTACTAAATTCATAGGATTAACAAAACGAGTCCTGACTCGCGGCGGTGTTTACTCCACGGGGGTCTTCCCGATCCAACCCTTTGCTCGATcgtcatcatttactgaaaTCACACGTCACGGTAGTCGGCAGGAAAACCATTTAAACTTGGCTTGCTCAGGATGCGCCCGCTTCGTTGCGTGACAGCTGCGCTAACATCTGTATGATCCGCCGCGGAATGAGAGAGATGCGGGTGTTAACTGTCCTACTCGGCGTTATATCTGTCCTGAAGGAGGCTGAAGCCTGGGGTTACAAGAATGGAATACTGCACAACTCTATCTGGCTGGAGCAAGCCGCTGGAGTTTACCACCGCGAATCTCGCAAAGGACGGTATCAGCTGACGTACGGTGAAGCCAAGGCTGTGTGCAAATTCGAGGGGGGTACTCTCGCTACATATGATCAACTGGAGGCTGCTCGCCAGATTGGTTTCCATGTGTGTGCAGCTGGATGGTTTGACAAAGGACGTGTGGGTTATCCGATTGTTAAAGCTGGCGCCAACTGTGGTTTTGGAAAAGTTGGAATAATTGATTATGGATATCGTCTCAACAAAAGTGAGAAGTGGGATGTCTACTGCTATAACCCTGGGGCAAAAGAGTGTGGAGGTGTACACACAGATCAGGAGAAGGTTTTAGATTCTCCTGGTTACCCAGAGGACTACCAGGATGAGCAGATTTGCTACTGGCACATTCGTGTGCGCTACAGACAACGAATTCGCCTGCACTTCCTAGACTTTGACATTGAGGAAGACACAGATTGCctcagtgattacctggagatCTATGACAGCTATGATGATGTTTCAGGCTTTGCTGGaagATACTGTGGGGATGAACTTCCAGAGGACTTCATAAGTACAGGAAACGTCATGACCCTCAAGTTCCATACTGATTCCTCAGTGACGGGTGGAGGTTTTCAGCTGCAGTACATCGCTGTGAACTCCTCTCAGCTCTTTGACAACCACACTGATGACTTCTCTTGACCAACGTTTAAATCACCAAACCTACTTCTTTATTATACCCAAACCCACAACtctgtcattttttaaatataattttttatttctttaccaAGGGTGCAATATTAAAGCTGTTAATAATCACATATTTACGTGTAAAGGCCTgtgaatatttgaaaaataaactcggataaaacagtttttttacattctagTTACTTTACATTCTAGTTCATACAACTTGTCCAACAGtgcatttaatgtattatagtGTTTCAatataaacataagaaataagctgaaatctgttttaataGAGCCAAACCCGTGGGATGCATAAAGGCCTGACATTGTAGAAACACAAGTGTAATTCTGTGTGTACATTCTGTAGAACTAATATGAAACAAAGCATGATACTAATACtaaccaaaaatacaaataaaaaaataaaatgaaaaa

Function

symbol description
tnfaip6 Predicted to enable hyaluronic acid binding activity. Predicted to be involved in negative regulation of inflammatory response. Predicted to act upstream of or within cell adhesion. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in corneal neovascularization. Orthologous to human TNFAIP6 (TNF alpha induced protein 6).

NR:

description
tumor necrosis factor-inducible gene 6 protein-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function

KEGG:

id description
K19018 TNFAIP6, TSG6; tumor necrosis factor-inducible gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248404.1 True 1492 mRNA 0.43 7 13913874 13921597

Neighbor

gene id symbol gene type direction distance location
tsn tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218,LOC107725218 coding downstream 90089 13821399 ~ 13823785 (-)
eaf2 eaf2,LOC107683512,LOC107725251,LOC107723678,LOC107658291,LOC108261038 coding downstream 126746 13783785 ~ 13787128 (-)
si:dkey-91i10.3 si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015 coding downstream 130422 13777626 ~ 13783452 (-)
mmadhcb LOC107555358,LOC107723693,LOC107725215,LOC107555052,LOC107658219 coding downstream 148548 13760324 ~ 13765326 (-)
LOC122351432 LOC107723646,LOC107684057,LOC107555330,LOC107577428 coding downstream 219687 13684985 ~ 13694187 (-)
itgb5 itgb5,LOC107723672,LOC107725247,LOC107658201 coding upstream 4316 13925913 ~ 13961097 (-)
rbm44 LOC107674378,LOC107723642,LOC107555328,LOC107736749,LOC107735772 coding upstream 40160 13961757 ~ 13972062 (-)
etv5a etv5,etv5a,LOC107723673,LOC107729410,LOC107658285,LOC107673585 coding upstream 52450 13974047 ~ 13985162 (-)
LOC122351370 LOC107723674,LOC107672245,LOC107555347,LOC567728,LOC107555039,LOC107658284,LOC107729411 coding upstream 63418 13985015 ~ 14086771 (-)
crygs3 crygs3,LOC107555333,LOC107658281,LOC107705159,LOC107723661,LOC107686303 coding upstream 171330 14092927 ~ 14093892 (-)
G70306 NA non-coding downstream 35462 13878124 ~ 13878412 (-)
G70305 LOC107725229,LOC107658288 non-coding downstream 37408 13873518 ~ 13876466 (-)
G70303 NA non-coding downstream 40863 13872706 ~ 13873011 (-)
G70288 neb,LOC107658288,LOC107723644,LOC107678501 non-coding downstream 47726 13859783 ~ 13866148 (-)
G70289 NA non-coding downstream 51939 13861522 ~ 13861935 (-)
G70308 NA non-coding upstream 2152 13923749 ~ 13924104 (-)
G70309 NA non-coding upstream 3019 13924616 ~ 13924836 (-)
LOC122352120 NA non-coding upstream 252220 14173817 ~ 14189001 (-)
G70332 LOC107724468 non-coding upstream 322690 14244287 ~ 14247328 (-)
G70382 NA non-coding upstream 555735 14477332 ~ 14562992 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 931 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 100547 13807822 ~ 13813327 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other downstream 240067 13642303 ~ 13673807 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 418207 13473135 ~ 13495667 (-)
G69757 NA other downstream 927896 12985124 ~ 12985978 (-)
G70294 NA other upstream 16662 13938259 ~ 13939868 (-)
G70317 NA other upstream 274882 14196479 ~ 14253776 (-)
LOC122351495 NA other upstream 438049 14359646 ~ 14372674 (-)
G70549 NA other upstream 1381506 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 1467621 15389218 ~ 15399437 (-)

Expression


Co-expression Network