etv5a (etv5,etv5a,LOC107723673,LOC107729410,LOC107658285,LOC107673585)


Basic Information

Item Value
gene id etv5a
gene name etv5,etv5a,LOC107723673,LOC107729410,LOC107658285,LOC107673585
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13974047 ~ 13985162 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248408.1
GAGCAGTCCATTTACAAAACCTCATTCAAGTTTTGAGCGTCGGAGAGAGCGCATCTATTGATCAGTCCGAGCGCACTGCATCCTTTTGGGATTAAAATCTGaaacgtgttttttttcaatccaCTGCGAGAGGCGCGTCATCTATACGaaaacagaagaCCCAAAGAGGTCAATACAACAATCGCTTTTAAGCGAAGACCCTTTGCTGGGAACTTTCTTGAAGACCCAGGTGACATGGACGGATTTTATGACCAGCAAGTACCATTTATGGTCCCACCTAATCAAAAGTCCTTACAAGTGGAGGAACCGTATGGCCGAGCAGTGAAcgacagaaaaagaaagttagTGGAGACTGAACTCGCTCAGGACACAGAGGAACTTTTCCAGGACCTCAGCCAGCTGCAAGAGATCTGGATCGCAGAAGCTCAGGTGCCCGATGATGAACAGTTTGTCCCAGATTTCCAGTCGGAGAGCTTGATGTTTCATGGCCCACCACCAGTGAAGATCAAACGCGAACTGAGTCCCTCCAAAGAGCTGTCTCCCTGTAGCCAGGATAGAAGTCCCATGCCGTATGGAGAGAAGTGCCTTTACAGCTACAGTGCCTATGAAAGGAAGCCCACAGCTGGGTTCAAGCCATTGACTCCTCCCTCAACGCCCGTCTCACCATGTGTCCCCACCACCACTCTGGGGACACGTCCCCTGCATGAACAGACTCCTCCTCCCGTATCCAACTCAACATTAGGGCAGCGTCTCCTTCATGGGCAGCCTTCAATGACCAAGACCACCCCCAGCCAACAGGCTCTCCCTCACCACAGCCAGAGCCCACCTTTTGCAGTACCCTGTCCACCCCTAAACCGTGACTTCAGTAATGAACCTAGGTTTCAACGGCAACTTTCAGAGCCTTGCCTTCCATTCCCACCTTCTGACACCCAAGGGAGACCCAGCTTCATGCCACAGGTCCCCAGCACTTCACCGAGAGATGGAAGGCCACCATACCATCGCCAAATGTCCGAGCCCCTGGTTCCTGTGCCTCCTCAGGGCTTCAAACAGGAGCTCCTAGACCCCCGCTATGCTGAGCAAGGTGTTCCCAACATGGGCCCATCCCAGGCTGCCTTCCACCCGATGGCCATCAAGCAAGAGCCACGAGACTTCTGCTTTGATTCTGAAGTGCCTAAGTGTCAGTCTTCATTTGGGAGAGCAGCAAGCTTCTACCAAAACCATGAGAACTTCTCATTTGACAGAGATCAGCAATTGTATTTCGACGACACCTGTGTGGTTCCTGAGAGACTTGAAGGGAAGGTAAAGCAAGAGCCCTCTGTGTATCGTGACGGCCCGCCTTACCAACGCCGCGGCTCCCTCCAGCTTTGGCAGTTTCTGGTTACACTGCTGGATGATCCTGCCAACGGTCACTTCATAGCCTGGACAGGACGTGGAATGGAGTTCAAGCTTATTGAGCCAGAGGAGGTGGCCCGGCGCTGGGGCATCCAGAAGAACAGACCAGCCATGAACTACGACAAACTCAGTCGCTCACTGCGTTACTATTATGAGAAGGGAATCATGCAGAAGGTAAAGGTCGCTGGCGAGAGGTACGTGTACAAATTTGTGTGCGATCCTGAGGCCCTCTTCTCGATGGCCTTCCCAGACAACCAGAGGCCCAACCTTAAAGCAGACCCTGACGGCTTGCCCGGAGTGGACGACGACACGCTTCCTTTGGCGCACTATGACGAGGGGGCTTCATACCTGGTGGACGGTGGCGAGCAGTGTGTTGCTGGGATGCCTTTCCCCGACGGTTACGTCTACTGAGCATGAACTGTTGATCTGACTGAAACACATCTGTCCCTATTGCCTCAACTCCTTTTGAACTGTTGCCCACTTCCAGATTAACCCTcccaatcatttaaaaagaacgAGGAGAAATCTGCGAGCCACCTTTTCTCAGGCGAGAGAAAGGTGTCAAGGAGGTGAGGAAAGCTGGCTTCCCACGCTTAACCTTCCTCGTGGCAAACCGGTCGCTGCCACATAGAAGAAAAGGTTGAGCTGGAGCCGACCGGTGCCGAAAGACTGACAGATCTCACTGCGAGAATTGTAGCAATTCTGTTTTTGAcaatctgctttttttaaaaaggaaaaattggCAACAAATTATTTAGAGACAtcctcacagaaaaaaaaatgcagcactaTGTAATAGTTGCCTTTTTGGTCCGAATTAATTTTGTTGTACCTCCAAACCATGTAGACAAGAAGTCAAAAGGGCTTTATTttacaaggcaaaaaaaatgacCCATTTGTTTCTTCAGACTTGTTAAGACTCTTTAGAAAGCTGGCTTTTATACAACACTTTTTGTTGAACTAAACGTGGACGGCTTTAATTATGCTGAGGAATACAGaacatgttttttgtattatttggttttgttctgAGTCCTTTGTCAAtgtgttggatttttttttattaactttttcgTTTTCATGCTGGTTAACCCAGGGGTTGTTGATGTGAAGTTCAACCAGAGGCACTCTTAGTATATTTAGTCAACTTCACAGGACTGTTAACCcattttacatgtatttctGTATGCTTGTCGCTATTTTACTTTTAGGTTTCACTTCCCAAAAAGCCAAATTTTGAATTGCAGAATTTTCTCACTAGACAACATTCAAAAGGGATGCACTAGTCAGACTTTTTCCATGCTTTAGTGTAAGTAAAGGTCAAACAACATTTTAGCCtcttacattattatttttggcattGTTCTATATTTTAATGCACCAGGAGAGCAGGAGTATCAGGGCCTTGCATGCAATAAGGtacaagaaaatacattttcctgGTCAGCTCCTCATTGCCAATCTCGAGATGTTAAAAGACCACTGCTTCCTTTTGCATGACGTATTCAATGATCAGCTGTCCACTAACATATCGCTTTATGCTGGACAAAGAAGAAATTGTggagttatctttttttttttttttttttttgaaaaagatgaacttatatatttttgcaaagtctgcatttatttgattttattgtataaGCTGTATAGTTCTGCCTGTAACAGATACTCTATGTATGTTTTAAGTGGATCCCTGTGTTGCAGTGACTGCACACCAGTGGTTACCGGACACCCTTTCATGGTGGGTTCGAGAACAGTGCCTTTTAAATTAGAGGTGCAGCTtctaaaataactgttttctcaTGGAACGAGGGGCTTGTCTCTATCCACCACAGAAGGGTTGTCTGCACTTGTACAGGCTTAACCTTGTCCCTCACAATGTGTACCTTACACTGCTGAGTTTATAATCTGTACTGGGTACAATAAACTGTCCATTCTGCTTCA
>XM_043248409.1
AGCAGTCCATTTACAAAACCTCATTCAAGTTTTGAGCGTCGGAGAGAGCGCATCTATTGATCAGTCCGAGCGCACTGCATCCTTTTGGGATTAAAATCTGaaacgtgttttttttcaatccaCTGCGAGAGGCGCGTCATCTATACGaaaacagaagaCCCAAAGAGGTCAATACAACAATCGCTTTTAAGCGAAGACCCTTTGCTGGGAACTTTCTTGAAGACCCAGGTGACATGGACGGATTTTATGACCAGCAAGTACCATTTATGGTCCCACCTAATCAAAAGTCCTTACAAGTGGAGGAACCGTATGGCCGAGCAGTGAAcgacagaaaaagaaagttagTGGAGACTGAACTCGCTCAGGACACAGAGGAACTTTTCCAGGACCTCAGCCAGCTGCAAGAGATCTGGATCGCAGAAGCTCAGGTGCCCGATGATGAACAGTTTGTCCCAGATTTCCAGTCGGAGAGCTTGATGTTTCATGGCCCACCACCAGTGAAGATCAAACGCGAACTGAGTCCCTCCAAAGAGCTGTCTCCCTGTAGCCAGGATAGAAGTCCCATGCCGTATGGAGAGAAGTGCCTTTACAGCTACAGTGCCTATGAAAGGAAGCCCACAGCTGGGTTCAAGCCATTGACTCCTCCCTCAACGCCCGTCTCACCATGTGTCCCCACCACCACTCTGGGGACACGTCCCCTGCATGAACAGACTCCTCCTCCCGTATCCAACTCAACATTAGGGCAGCGTCTCCTTCATGGGCAGCCTTCAATGACCAAGACCACCCCCAGCCAACAGGCTCTCCCTCACCACAGCCAGAGCCCACCTTTTGCAGTACCCTGTCCACCCCTAAACCGTGACTTCAGTAATGAACCTAGGTTTCAACGGCAACTTTCAGAGCCTTGCCTTCCATTCCCACCTTCTGACACCCAAGGGAGACCCAGCTTCATGCCACAGGTCCCCAGCACTTCACCGAGAGATGGAAGGCCACCATACCATCGCCAAATGTCCGAGCCCCTGGTTCCTGTGCCTCCTCAGGGCTTCAAACAGGAGCTCCTAGACCCCCGCTATGCTGAGCAAGGTGTTCCCAACATGGGCCCATCCCAGGCTGCCTTCCACCCGATGGCCATCAAGCAAGAGCCACGAGACTTCTGCTTTGATTCTGAAGTGCCTAAGTGTCAGTCTTCATTTGGGAGAGCAGCAAGCTTCTACCAAAACCATGAGAACTTCTCATTTGACAGAGATCAGCAATTGTATTTCGACGACACCTGTGTGGTTCCTGAGAGACTTGAAGGGAAGGTAAAGCAAGAGCCCTCTGTGTATCGTGACGGCCCGCCTTACCAACGCCGCGGCTCCCTCCAGCTTTGGCAGTTTCTGGTTACACTGCTGGATGATCCTGCCAACGGTCACTTCATAGCCTGGACAGGACGTGGAATGGAGTTCAAGCTTATTGAGCCAGAGGAGGTGGCCCGGCGCTGGGGCATCCAGAAGAACAGACCAGCCATGAACTACGACAAACTCAGTCGCTCACTGCGTTACTATTATGAGAAGGGAATCATGCAGAAGGTCGCTGGCGAGAGGTACGTGTACAAATTTGTGTGCGATCCTGAGGCCCTCTTCTCGATGGCCTTCCCAGACAACCAGAGGCCCAACCTTAAAGCAGACCCTGACGGCTTGCCCGGAGTGGACGACGACACGCTTCCTTTGGCGCACTATGACGAGGGGGCTTCATACCTGGTGGACGGTGGCGAGCAGTGTGTTGCTGGGATGCCTTTCCCCGACGGTTACGTCTACTGAGCATGAACTGTTGATCTGACTGAAACACATCTGTCCCTATTGCCTCAACTCCTTTTGAACTGTTGCCCACTTCCAGATTAACCCTcccaatcatttaaaaagaacgAGGAGAAATCTGCGAGCCACCTTTTCTCAGGCGAGAGAAAGGTGTCAAGGAGGTGAGGAAAGCTGGCTTCCCACGCTTAACCTTCCTCGTGGCAAACCGGTCGCTGCCACATAGAAGAAAAGGTTGAGCTGGAGCCGACCGGTGCCGAAAGACTGACAGATCTCACTGCGAGAATTGTAGCAATTCTGTTTTTGAcaatctgctttttttaaaaaggaaaaattggCAACAAATTATTTAGAGACAtcctcacagaaaaaaaaatgcagcactaTGTAATAGTTGCCTTTTTGGTCCGAATTAATTTTGTTGTACCTCCAAACCATGTAGACAAGAAGTCAAAAGGGCTTTATTttacaaggcaaaaaaaatgacCCATTTGTTTCTTCAGACTTGTTAAGACTCTTTAGAAAGCTGGCTTTTATACAACACTTTTTGTTGAACTAAACGTGGACGGCTTTAATTATGCTGAGGAATACAGaacatgttttttgtattatttggttttgttctgAGTCCTTTGTCAAtgtgttggatttttttttattaactttttcgTTTTCATGCTGGTTAACCCAGGGGTTGTTGATGTGAAGTTCAACCAGAGGCACTCTTAGTATATTTAGTCAACTTCACAGGACTGTTAACCcattttacatgtatttctGTATGCTTGTCGCTATTTTACTTTTAGGTTTCACTTCCCAAAAAGCCAAATTTTGAATTGCAGAATTTTCTCACTAGACAACATTCAAAAGGGATGCACTAGTCAGACTTTTTCCATGCTTTAGTGTAAGTAAAGGTCAAACAACATTTTAGCCtcttacattattatttttggcattGTTCTATATTTTAATGCACCAGGAGAGCAGGAGTATCAGGGCCTTGCATGCAATAAGGtacaagaaaatacattttcctgGTCAGCTCCTCATTGCCAATCTCGAGATGTTAAAAGACCACTGCTTCCTTTTGCATGACGTATTCAATGATCAGCTGTCCACTAACATATCGCTTTATGCTGGACAAAGAAGAAATTGTggagttatctttttttttttttttttttttgaaaaagatgaacttatatatttttgcaaagtctgcatttatttgattttattgtataaGCTGTATAGTTCTGCCTGTAACAGATACTCTATGTATGTTTTAAGTGGATCCCTGTGTTGCAGTGACTGCACACCAGTGGTTACCGGACACCCTTTCATGGTGGGTTCGAGAACAGTGCCTTTTAAATTAGAGGTGCAGCTtctaaaataactgttttctcaTGGAACGAGGGGCTTGTCTCTATCCACCACAGAAGGGTTGTCTGCACTTGTACAGGCTTAACCTTGTCCCTCACAATGTGTACCTTACACTGCTGAGTTTATAATCTGTACTGGGTACAATAAACTGTCCATTCTGCTTCA

Function

symbol description
etv5a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within several processes, including hemangioblast cell differentiation; limb morphogenesis; and pronephric nephron tubule epithelial cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including mesoderm; nervous system; neural tube; pronephros; and tail bud. Orthologous to human ETV5 (ETS variant transcription factor 5).
etv5 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in cellular response to oxidative stress; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
ETS translocation variant 5-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035108 limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15593 ETV5; ets translocation variant 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248408.1 True 3345 mRNA 0.46 13 13974047 13985162
XM_043248409.1 False 3338 mRNA 0.46 13 13974047 13985161

Neighbor

gene id symbol gene type direction distance location
rbm44 LOC107674378,LOC107723642,LOC107555328,LOC107736749,LOC107735772 coding downstream 1985 13961757 ~ 13972062 (-)
itgb5 itgb5,LOC107723672,LOC107725247,LOC107658201 coding downstream 12950 13925913 ~ 13961097 (-)
tnfaip6 tnfaip6,LOC107723653,LOC107658287,LOC107677671,LOC107555349,LOC107725226 coding downstream 52450 13913874 ~ 13921597 (-)
tsn tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218,LOC107725218 coding downstream 150262 13821399 ~ 13823785 (-)
eaf2 eaf2,LOC107683512,LOC107725251,LOC107723678,LOC107658291,LOC108261038 coding downstream 186919 13783785 ~ 13787128 (-)
crygs3 crygs3,LOC107555333,LOC107658281,LOC107705159,LOC107723661,LOC107686303 coding upstream 107765 14092927 ~ 14093892 (-)
crygs4 crygs4,LOC107723662,LOC107555042,LOC107669732,LOC107658282,LOC107705158 coding upstream 111713 14096875 ~ 14097614 (-)
LOC122352116 LOC107568713,LOC107555340,LOC107555339,LOC107555341,LOC107664838,LOC107705172 coding upstream 186627 14171789 ~ 14172518 (-)
LOC122351874 crygm1,zgc:153846,LOC107568769,LOC107668858,LOC107724461,LOC107705171 coding upstream 204442 14189604 ~ 14190624 (-)
crygm1 crygm1,zgc:153846,LOC107568769,LOC107668858,LOC107724461,LOC107705171 coding upstream 209521 14194683 ~ 14195492 (-)
G70309 NA non-coding downstream 49211 13924616 ~ 13924836 (-)
G70308 NA non-coding downstream 49943 13923749 ~ 13924104 (-)
G70306 NA non-coding downstream 95635 13878124 ~ 13878412 (-)
G70305 LOC107725229,LOC107658288 non-coding downstream 97581 13873518 ~ 13876466 (-)
G70303 NA non-coding downstream 101036 13872706 ~ 13873011 (-)
LOC122352120 NA non-coding upstream 188655 14173817 ~ 14189001 (-)
G70332 LOC107724468 non-coding upstream 259125 14244287 ~ 14247328 (-)
G70382 NA non-coding upstream 492170 14477332 ~ 14562992 (-)
G70393 NA non-coding upstream 604696 14589858 ~ 14590275 (-)
G70396 NA non-coding upstream 609101 14594263 ~ 14595342 (-)
G70294 NA other downstream 34179 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 61104 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 160720 13807822 ~ 13813327 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other downstream 300240 13642303 ~ 13673807 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 478380 13473135 ~ 13495667 (-)
G70317 NA other upstream 211317 14196479 ~ 14253776 (-)
LOC122351495 NA other upstream 374484 14359646 ~ 14372674 (-)
G70549 NA other upstream 1317941 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 1404056 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 1786259 15771421 ~ 15771864 (-)

Expression


Co-expression Network