efhc2 (efhc2,LOC107673658,LOC107756743)


Basic Information

Item Value
gene id efhc2
gene name efhc2,LOC107673658,LOC107756743
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16526525 ~ 16538075 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248411.1
AAACAATCTTATCTTAGCAACAGGTCCTGAGCAGGCTGGGATCGTTCTCGACTGAACAAAACCTACATTATCGTTAGTTATTAATAATGGCGCTGCCAATGTTGCCTGGAAATTCGGTCAATAGAAATCTGGGAAAAGACAAATTTCACAAATCTCAGCATTTTGATTATTCAAATGGAGTAGCCATGATGGTTGGGTCAGAGAAGTCAGGCATTGGGGGAGAACTTCTCCTGGGGCAGAGCGCAAGACCCAAGTATTCACTTTTTCCGAAGGGAGAGGGCAGTGATGCTCCGGCATGGGTTGCTTTTGACAAACAGgtgctgtgttttgatgctCATTTCCAAGAAGCTGTACCTCAGAGGAGGGAAGAAAAATATAGAGTGCGAAAGTGCAAGATTTACTTGTATCTGGAGGATGACACCATACAAGTAGTGGAGCCAGAGTTCAAAAACAGTGGGATGCCACAGGGAACCCTGATTCGGAGGCACCGTATTCCTCTCCCAGCTTCTAAAGATGATTGCTTCTACACTGTGCACCATTTTAACATCAATCAGGAAATAGTGTTCTATAACAGAACCTTTACGATTACGGACTGTGACCCCTTCACACGCAACTTCTTGATAAAACTGGGGGTGCGCCTAAACCTCCCTGCTTCCACTCCAGCAGATCCCTATACCACACATCGACAAGGAATCGAGGAGAACATGAAGCCACTGCGACCGTATGAAAGAATAGATACGCTCAAGCAGTTTTTGGAACAGGATCGCAAAGTCTTGCGCTTCTACTGCTACTGGGATGATACCGAGAGCATGTTTGGAGACCCTAGAGAGCTGATCTTGCATTACTTCCTGGCAGATGACACCATGGAAATTTACGAAGTTGTCCGTCCAAACTCTGGTCGAGATGCTGCCCCTAAATTTCTACACAGAGGCAAGCTTCCTAAGCATGCTCCTATTCCCAAACATCAGCCCGGAGAAATAACAGACCGCACAGTCCTCAACGTATTCGGACCAGTCGGACAAGGAGGACGCTACATTTTGGATAGCCTCAAGACGGGAGCAGTAAAAGAAGAATTCTACAAAGAATGTGACCTGACCATCGGAGGCGTCATTAATGTGTGGGGTCGTAGGATGTTGATATGTGACTGTGACAACTTCACTAAAGAGTATTATCGCTCTAAATATGGTATTGAGGACTTCACACCTGTTTCATACCAGGCCTCGCTCCCTCCTAAACCAGCCAGACAGGTGGCACCTTACACTGGATTTGGATCTGAGGAGGATTCGCTGTGCTCCTGTCAGGGTTTGCTGCCTAAACCTCCACAGAAGGATTTCAAGAAGCTTATGGAAAAAGACAGgCAAGGTCTGGTGAGCAATGTGTTGAGATTTGTGGCGAAAATGCTGACAGACAGTCCCATCGACAAGGAACGTGTTTTTATCATGTACGTCTACCTCAGTGATGACACCATAGCAGTCTTTGAACCTCCTCAGAGAAACTCAGGTGTGATTGGGGGTAAGTTTTTAAAGAGAGGTCGAGTGAAGAAGCCAGGACAAGAGCTGTTTAAGAGTGAGATGTCCGAGTACTTCACAGCTCAGGATTTGTATGTGGGAGCTCGGCTGGATCTGAACAATCAGCCCTTCCAGCTGCTGGATGCTGATGAGTTTACATTTAACTACATGGAGCAGCATGCAGATGAGTTCCCCAAGGCAAATATTGGCACCATCATTAGCAAGGTAAAATCCATCAGTGAGGAAGAgcaaaagaaagtaaaacagTTCTTCACCATGAGTGACCCAAGCAGCACTGGCTTCATTCCATATGAGTCATTTAGGACTCTGTTGGCTGAAATGGACATTGCCTTTTCTGAACACGAGATCATAACGTTGGGTCGCAATTATTCATCACGGGAACTACCAGAGGTGGACTTGGGCCTCATGCTTGCTGTGGCTCAGGATCAgctaaagaagaaaaactttGAGAACTTCACAGATATGATTCGAGCGTTCACACATGAGGACCGGGACAGGTCTGGACACCTTTCTTCTAAAGAGGCGAAGATCATATTTAAAGCCTTCCGAATGCCCCTGTCTGATGACCTACAACGAGCCCTCCTGGAAAAGTTTCAAGACGAGTCTGAGAAGATTGACTATCACGCTTTCTTCTCCAGTATCAACTGGAGAGAAAACCCCGCCCCTGCTGTGCTTCCAGATGTCACTGTGAAGTTTGATGCAGACTGGAGAGGAGACGCTGCAGACCCTGCAGTTAAAACCATCAACTACTCGCTCTTTCTGGAGGACGTCTTTGGCAGCACTGCGAACATTAATGACAGCTGAGAACGGCTTGATGGGATCCTCAATAACATGAGAAAGTCAAGAAATCTGCTCAACTTTGTGAAGTGCGCTGATTAAATTCACATTGTTGCACATGGTTGTTTCTGTTGTGCTGCATGAATGTCATAATACggttta

Function

symbol description
efhc2 Predicted to enable alpha-tubulin binding activity. Acts upstream of or within multi-ciliated epithelial cell differentiation and specification of pronephric distal tubule identity. Predicted to be active in axoneme and mitotic spindle. Predicted to colocalize with microtubule. Is expressed in several structures, including forerunner cell group; intermediate mesoderm; notochord; sensory system; and tail bud. Orthologous to human EFHC2 (EF-hand domain containing 2).

NR:

description
EF-hand domain-containing family member C2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248411.1 True 2468 mRNA 0.46 15 16526525 16538075

Neighbor

gene id symbol gene type direction distance location
LOC122351145 ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887,LOC107565935 coding downstream 11081 16509560 ~ 16515444 (-)
mao mao,LOC107748155,LOC107673703,LOC107565948,LOC107595828,LOC107695498 coding downstream 21598 16477543 ~ 16504927 (-)
LOC122352003 caska,LOC107673660,LOC107565944 coding downstream 107751 16333185 ~ 16418774 (-)
LOC122351999 caska,cask,LOC107565944 coding downstream 226068 16203973 ~ 16300457 (-)
rpl8 rpl8,LOC107595836,LOC107748161,LOC107673716,LOC102782025 coding downstream 343414 16181754 ~ 16183111 (-)
fundc1 fundc1,LOC107673665,LOC107748200,LOC107565940,LOC107695457,LOC107595886,LOC107756742 coding upstream 293 16538368 ~ 16540651 (-)
dipk2b si:ch73-147f11.1,LOC107756741,LOC107695496,LOC107595885 coding upstream 41656 16579731 ~ 16584061 (-)
slc35a5 LOC107748197,LOC107565955,LOC107673679,LOC107756781,LOC107695476 coding upstream 156679 16694754 ~ 16698639 (-)
LOC122351201 nxpe3,LOC107748146,LOC107673677,LOC107597504,LOC107695470,LOC107756776,LOC107595812 coding upstream 213928 16752003 ~ 16760172 (-)
LOC122352097 me3,LOC107748144,LOC107595810,LOC107695468,LOC107756775,LOC108426042,LOC102313335 coding upstream 223798 16761873 ~ 16767185 (-)
G70894 NA non-coding downstream 406206 16118282 ~ 16120319 (-)
LOC122352066 NA non-coding downstream 572549 15948113 ~ 15953976 (-)
G70660 NA non-coding downstream 763856 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 882249 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 888089 15628883 ~ 15638436 (-)
LOC122351188 NA non-coding upstream 67292 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 72195 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 75042 16613117 ~ 16613424 (-)
G70967 NA non-coding upstream 92411 16630486 ~ 16715102 (-)
G70962 f5,LOC107756778,LOC107748149,LOC107565953,LOC107673674 non-coding upstream 174744 16712819 ~ 16713846 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 754661 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 1127088 15389218 ~ 15399437 (-)
G70549 NA other downstream 1220550 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 2153851 14359646 ~ 14372674 (-)
G70317 NA other downstream 2272749 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 182729 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 279065 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 348678 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 697797 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 826112 17364187 ~ 17521560 (-)

Expression


Co-expression Network