cxcr2 (LOC107656519,LOC107596606,LOC107739752,LOC107688962,LOC107564148,LOC107731305)


Basic Information

Item Value
gene id cxcr2
gene name LOC107656519,LOC107596606,LOC107739752,LOC107688962,LOC107564148,LOC107731305
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24761541 ~ 24764855 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248413.1
TACCCCattttttgattattcattCAGGAAGGAAAGGGACGGGTAGACTTGTAATAAGCAGTTGTTATCAATTCAGTCTTTCTCAGAAAATAGCAGTCGGTTTTGAGCAATTTTTCACTGAATGGTCCTTAAATCGCAGACGGCCAGACCTGAGCGCTGATAATcagtaaaaacacagaaaatacaACGGGGGAGTTGGGGGTCTGGTTAGGGGGACCCCACAAGAGCTTTGACACATTTCGAACACAGCTGTTGGCAGTCACGCATATTAAACATGGAAACTACTACTCCAGATTTCGTATACCCTGATTTGGTGACTCCCTGCCCAAAAACCTTGCAGTATATAAACAGCACGGCTTTGGTCGCCGTCTACATCATAGTCTTCTGCCTGAGCTTGCCGGGGAACGCTGTGGTGATCTTCGTGGTGAGCTGCATGGAGAACCGCAGGACGTCCACCGACGTTTACCTGATGCACCTGGCCATCGCCGACCTCTTCTTCACCTTGACTCTGCCGTTCTGGGCCGTTTACATTCACGCCCGCCAATGGTTATTCGGCACATTTATGTGCAAACTGATTTCAGGCTTGCAGGAAGCCACGTTTTACTGCTGCGTGTTCCTGCTGGCATGCATTAGCGTCGATCGCTACCTGGCCATCGTGAAAGCGACCCAATTCCTCACCCAGAAACGCCACCTGGTCGGTATAGTGTGTGCACTGGTGTGGCTGTGTGCCTTTTTGTTGTCCATGCCCATCATGGTGAACCGCGAGGCCTTCATTTCTGGGTCTCTAGAGGGGTACATATGCGACGACAACTTGACCGCGGAAAGCATCGATATCTGGAGGGTGAGTTTAAGGATCCTCCACCACACTTTGGGATTCTTCCTGCCGTTGGCCGTCATGGTGTTCTGTTACGGTTTCACCATGTGCACGCTTTGCCGCGCGCGCAACAGCCAAAAGCACAAGGCCATGCGGGTCATCCTGTCCGTCGTGTTGGCTTTCATCGCCTGCTGGCTGCCCAATAATATCCTGGAGGTCGTAGACACCCTGATGCGGGGCGGACAGTTGATGGAAACGTGCGAGCTGAGGGACGGCATTGACGTGGCGTTGTACGTCACGCAGGTGCTGGCTTTTGCCCACTGTGCCATAAACCCCATTTTGTACGCCTTCATTGGTAAGAAATTCCGCAACCAGCTCCTGATGTCTCTCTTTAAGAAAGGCCTGTTGGGAAGAGACACGATGTCGAAATATCGAGTGGGATCTGTTTATAGCTCCGGAAGCACTAGGCAAATGTCAGTGACTTTGTAGTCGACTCTTCTCATTATATAACAACGATGCATATTGTTCCTTTTTTGCTTTCAAGCAACAGTTTGGTCAGAAATGCTGCTTTGTTACTGCCTTATCAATGCGGTAAAAAcacaatgacagaattgtcatttttaaatgaactgttcctttaagaaaatTGCTTTCACTTAAGCCGAGTTCCGTTTTTTATAGATGTAAAAGAGCAGATAATAGCGTGTTTGTGTAGGGTTGACtttctgtagcttttttttgatgatgataTCGATCTGTGAGAGGTTTTTCTGCGGCTCGCGCTTCAAACGCGATGTGTGCATATCAAAACGATCTGTGAAAAACACTCTGCAGAGGTTTCCAATTTGGACAGGATTGAAAAAAGTTGAGATTAATTGAggttaagaatttttttattaatattattattattattattattttgggctcagtaaaattttttatttgatcaaaaatacagtacatattgTGCAACATtacaactataaaaaaaaagttattgtttaaTCTGATTTTTTCctgtgattcaaagctgaattttcagcatcatcacctcagtcttcagagtcacatgatccatcacaaatcattttaacattgatTTGCTGCTCGTTTCAATAGTTTTTGTCATcaaagaatgtattttttcattgaCCACAAACATTTGAAAGCTATTTTTgggcttattttaaaatattgtaaaaagcTAATGAAGTTTTGGGCTCAACTGTGTAAATAAAGTTGCTTCA

Function

NR:

description
PREDICTED: C-X-C chemokine receptor type 1-like

GO: NA

KEGG:

id description
K04175 CXCR1, IL8RA, CD181; C-X-C chemokine receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248413.1 True 2064 mRNA 0.44 3 24761541 24764855

Neighbor

gene id symbol gene type direction distance location
mettl5 mettl5,LOC107744838,LOC107739664 coding downstream 2884 24754888 ~ 24758657 (-)
ccdc173 ccdc173,LOC107596564,LOC107677915,LOC107564134,LOC107577048,LOC107744830 coding downstream 27759 24728368 ~ 24733782 (-)
fastkd1 NA coding downstream 33811 24717610 ~ 24727730 (-)
lrp2a lrp2a,lrp2 coding downstream 94374 24571862 ~ 24667167 (-)
abcb11a abcb11a,LOC107677906,LOC107674755,LOC107564151,LOC106581787,LOC107744834 coding downstream 202798 24533877 ~ 24558743 (-)
LOC122351585 LOC107656512,LOC107744835,LOC107596607,LOC107739743,LOC107688961,LOC107564147 coding upstream 3430 24768285 ~ 24772259 (-)
LOC122351587 NA coding upstream 20048 24784903 ~ 24786237 (-)
zgc:92380 zgc:92380,LOC107656510,LOC107564128,LOC107688951,LOC107739632 coding upstream 24651 24789506 ~ 24797054 (-)
gpbar1 LOC107656509,LOC107564146,LOC107688960,LOC107739693,LOC107596586 coding upstream 38768 24803623 ~ 24807781 (-)
LOC122351834 LOC107572957,LOC107663596,LOC107573769,LOC107728255,LOC107661170,LOC108265697 coding upstream 695040 25459895 ~ 25462849 (-)
G73160 NA non-coding downstream 15603 24739326 ~ 24745938 (-)
G73084 rdh1,LOC107566765,LOC107744825,LOC107674762,LOC106581784 non-coding downstream 190429 24564881 ~ 24571112 (-)
G73077 NA non-coding downstream 240233 24513094 ~ 24521308 (-)
G72980 NA non-coding downstream 475851 24253362 ~ 24285690 (-)
G73175 NA non-coding upstream 11305 24776160 ~ 24778655 (-)
G73179 NA non-coding upstream 36183 24801038 ~ 24801377 (-)
LOC122351686 NA non-coding upstream 47461 24812316 ~ 24821062 (-)
G73186 NA non-coding upstream 74751 24839606 ~ 24839961 (-)
LOC122351187 NA non-coding upstream 327781 25092636 ~ 25094799 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other downstream 480833 24220522 ~ 24280708 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other downstream 801216 23943985 ~ 23960325 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other downstream 830212 23930207 ~ 23931329 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 2250234 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 2537874 22171463 ~ 22223667 (-)
G73201 NA other upstream 262730 25027585 ~ 25030965 (-)
G73301 NA other upstream 583923 25348778 ~ 25349640 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other upstream 691559 25456414 ~ 25458742 (-)
G73347 NA other upstream 1025662 25790517 ~ 25793056 (-)
LOC122351758 LOC107663860,LOC107722919,LOC107561565,LOC107585695,LOC107675138 other upstream 1029228 25794083 ~ 25853303 (-)

Expression


Co-expression Network