hcn5 (si:rp71-68n21.12,LOC107724451,LOC107712254,LOC107658208,LOC107668864,LOC107569239,LOC108270784)


Basic Information

Item Value
gene id hcn5
gene name si:rp71-68n21.12,LOC107724451,LOC107712254,LOC107658208,LOC107668864,LOC107569239,LOC108270784
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14579283 ~ 14585833 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248414.1
TATAATTGCACAGATTAAATTGTTTTAGGAAGCATCATTTTAGCGTTTGATATATTTAGACGGAAGCTTCACAGacaaatgtgttaataacaaCAGTGACTAGTCGTGTTTTAATGAATTCAGTCACCCACTTAATAACTGAAGGCAATGTGATATGTAGATTACAATGAATGAATGCAGTTTAGGTGTTTGTTGCCTTCTGAGAACATAAGATCAGTTACATGTTACATTACTTGAATACCACTCTGAAATTCAACACTCTATTGTGACTCTCATAAACATAGTCTGCCAGTGCAACACAATACTGTATTCAGTTTTCTGGAGATCTAGTAAGCTCCACCATTGTGATGTGGTAAGGTGTCTGTTTTTGATGCAAACACATCCACAATGAAAACACAGACCATTTTCACCGGCTGCACCTAAGCAACATAGGTTAAACTTGATTTGTCCAAAATTGGCTTTGCCTGCAGAAATAGATACCTGtattctgtctctttctgaAGCAAAATTATCTGTGCACTCTTGTGTGTTCATTGGAAAGAATTTCTTTGCCATATCAGTAGAGTCACTTTGTGCACAATAAGAGCGTAAGTAATTCTATCACCTCCCATTGTCAGCCTGAGGTCCAGTTCTATTAGAACCATCTGTCTAGTTCAGATGACAATAGTTGTGATATTCAAAACCACCTTGTGTCAAAGAACCGCCCCGCAGTCCAGATGAGCTGAGCTGATGTGAGCGCGAGGCAGAGATACTGAATAGTTGATGAGACAATAGTTAGTTTGACAGAGGGGAAGAATGGAAAGCCTGGAACTTATCTCCTTCTCCGTTCTGGACCGAGCATGAGAACTGTGATGGAAAATTACTCTGCGGCTGTGCATGTGCacgcgtgagagagagagaaagcaagagagGGAGCGTGTAGATGAAGAAGAAAAGTGGATGAAATGGTCAGCATAAAAGAAAGTCCAGAAATAAAGTTGTCACAGAAGCACAGTGAGAGATGCTAGAGGTGCTTCGGTGATCACAGTGCTTAGTCAGGGCCTGGAAATGCATCGTCTCGCACCTGAGAATCACAGCCGCTTCAGTTGGAGCGGGTGGAAAAACCTTCTGCTGCCGCAGTTGAACAGACGCTCGCTGTATGTCTACGGCAGTGAGGTGGCTGTGGAGAAGGAGTGCGTTAGACAAAAAGAGGGAGGCGTGTTGGTCATCCATCCCTTCAGTCGTTTAAGGAGTTATTACATCATGTGTATGGTGGCCATAACATTTCTTAATCTGATTGGCATTCCGATGGAGATTGCATTTCTAGATGGCAACAGTGGAGTAGGCTGGGAGGGTTTTAATGTGTTCTCAGACACTCTGTTCCTGATTGACGTGGGTCTTAACTTTCGCATGGGGATCATTAATGAGGACAGTGAGGGAGTAACTCTGGATTTAAAAAGCATTCGACAACAGTATTTGAAAAGCTGGTTTATACCTGATATGGTGGCAGCATTCCCAGTTGGTTACATACTACTTATTGCGGACCTACAATACCACGGTGACTCTCCCTCGTCCAGAGCCAGCAAAATGATGCGCATCTTGATGTTTGTGAGAATCCTCAGCCTTGTCCGCTTGCTACGTGTGTCAAGGCTTGTTAGGTTTTTCAATGAGGTGGAAAGAGTTTCAAATGCCAACTTGGAGGTGGTGAGGGTGTTCCTCAGAATCTTGTCGTTATTTATGATGATTTTCCTGCTCTGCCACTGGAATGGATGTATTCAGTATTTTGTGCCTATGCTTGAGGAGTTTCCCTCAGACTGCTGGGTTAGAAGAGAAAATCTAATGAATGCTACAGTGGGGGAGAAGTACTCTTTTGGAGTCTTTCGGGCCCTCTCTCATATGACTGCAATATCATACGGTTCCTCTGAAACACCCACAAGCAAGGAGTATACTTTTGATAAGCTGATTTAgccaaatgttcattttataccACAACGATCACGATGCACAACTGATACTTCTTTTAAtgcctgatttttttattttttgttttagatgaaGTTGAGCTGTGGATAGTCATGACTAGCATTGTGTCTGGAGCCCTCATGTACACAGTGATGGTCGCCAACACTGCTGTAATGATGACTGATGTGGACATAACAGCAAGAGCGTACAAGAACAAGaTGAATCATATGGAAGATTATATGACTTTCATGAAGCTTCCAAAAGGCCTTCGTATGCGCATCAACAACTTTTTTCAGGCTCGTTATGCAGGAAAATGGTATGATGAGAAGGATGTCCTGAAGTGGGTGTCTTCCTCTCTCAGAGAGGAAATTCTGATGACCATGTGCTCGGCCCATGTGAGAAAAGTTCCCTTTTTCCGGAACTGTGATGTAAACTTCATCAATGCCATTCTTCTGGAGCTGCAGTATGAGAAGTCTACCAGGTGGGAGACATCATCATCCGCCAGAACACTCCTGGTGACCGCATGTTCTTCATCGAACACGGGCAGGTCCTTGTGGAGAATGAGTTCTACCAGAGAGAACTGTGTGATGGAGACTGCTTTGGAGAGTCATGTCTTCTAACAAGAGGAAGGCGTTTGGCCACAGTACAAGCTCTGACTATCTGTCAGCTTTTTTCCTTGTCAGTGGACTCATTTCATTCTGTTCTGAAGGACTTTCCAGACATCAGGAAGTACATGGAGACATTTCAACAGGATAAAgacattttgttatgttgagAATGTAAAATTTAGATCTATCAATGGCACAATTTGCAGCACAACTTTTAACAGTTTTCCTGGAAACCATGATATATCTTTTCAACAAAGAACAGTCTTTGTTTGAAATAGAGATTTTGTTACATtctaaataccttttttttgctAGTACTTTTGATTTAGAAATTTATCTAACGTACCCCAaaattttgaatggtagtgttcattatatacacattatatacaaGTTATTTTAGGTAAGATAggaatttttttagaaatataacaCTACTTAGTAAGGGTAATTAAGGATGCAAGAGCTTAATGCCTTTTGATCTCTATTTTGCAtctctgtttaaattaaattggtaGATGGCTACACTTGCATTAAGCCCCTCCTGCAGCTTTCACAGCATGCACTTTCCCTAAATTGACAGCTTTTCATTACTTGGATCTTCTTCTATATTGGCATAGATTTGGAACATGGTTTTAGAACATTCTGCTCCTGCTGGTGGATGTGGGCTTAAGAATCCCCTTGTTCTACAGCGTTAAACAACAAGCTGTCCAAAAATGGTCTTTGTATAGCAAATAAGGTATGACTTGACAACTGCCTTGGAATGAGATTCCTCTGAGAATACTGATGGGATGATTTTAGACTGTTTGTAGGCCACCTTCTTCAGCTCCTCTTCTCCCTCTTGTCCTCCACTGCTATACTGCTTTCTAAGTGGCCACAAGAGGATGCATAGCTCAAAGAAAAGCATAACCAGCCACAATGTAATTTGTTAGGACCTCTGCTGCATGTTCCTCTAGCAGGTTTCTGCTGGTATGCACCTCCAAGATGGACTCTACGtcttcctctgtcttcttttgAAGTATCCAATTTTACATGAAATGTGTCCCACAAGAGTCAGTAGATTATTTCCAAAAACCAACACATGGATGTGAAAAATCTGTCTGGGCTTTTAAAAAACTCAAactttcaattattattattattttgtgggGGTTGTAGGATGTAGAGATAATTGTAGCACGgtttaaaaagtcaaatgtttataacagtcatattttaaaaaaatatgttaataaaatg
>XM_043248415.1
TATAATTGCACAGATTAAATTGTTTTAGGAAGCATCATTTTAGCGTTTGATATATTTAGACGGAAGCTTCACAGacaaatgtgttaataacaaCAGTGACTAGTCGTGTTTTAATGAATTCAGTCACCCACTTAATAACTGAAGGCAATGTGATATGTAGATTACAATGAATGAATGCAGTTTAGGTGTTTGTTGCCTTCTGAGAACATAAGATCAGTTACATGTTACATTACTTGAATACCACTCTGAAATTCAACACTCTATTGTGACTCTCATAAACATAGTCTGCCAGTGCAACACAATACTGTATTCAGTTTTCTGGAGATCTAGTAAGCTCCACCATTGTGATGTGGTAAGGTGTCTGTTTTTGATGCAAACACATCCACAATGAAAACACAGACCATTTTCACCGGCTGCACCTAAGCAACATAGGTTAAACTTGATTTGTCCAAAATTGGCTTTGCCTGCAGAAATAGATACCTGtattctgtctctttctgaAGCAAAATTATCTGTGCACTCTTGTGTGTTCATTGGAAAGAATTTCTTTGCCATATCAGTAGAGTCACTTTGTGCACAATAAGAGCGTAAGTAATTCTATCACCTCCCATTGTCAGCCTGAGGTCCAGTTCTATTAGAACCATCTGTCTAGTTCAGATGACAATAGTTGTGATATTCAAAACCACCTTGTGTCAAAGAACCGCCCCGCAGTCCAGATGAGCTGAGCTGATGTGAGCGCGAGGCAGAGATACTGAATAGTTGATGAGACAATAGTTAGTTTGACAGAGGGGAAGAATGGAAAGCCTGGAACTTATCTCCTTCTCCGTTCTGGACCGAGCATGAGAACTGTGATGGAAAATTACTCTGCGGCTGTGCATGTGCacgcgtgagagagagagaaagcaagagagGGAGCGTGTAGATGAAGAAGAAAAGTGGATGAAATGGTCAGCATAAAAGAAAGTCCAGAAATAAAGTTGTCACAGAAGCACAGTGAGAGATGCTAGAGGTGCTTCGGTGATCACAGTGCTTAGTCAGGGCCTGGAAATGCATCGTCTCGCACCTGAGAATCACAGCCGCTTCAGTTGGAGCGGGTGGAAAAACCTTCTGCTGCCGCAGTTGAACAGACGCTCGCTGTATGTCTACGGCAGTGAGGTGGCTGTGGAGAAGGAGTGCGTTAGACAAAAAGAGGGAGGCGTGTTGGTCATCCATCCCTTCAGTCGTTTAAGGAGTTATTACATCATGTGTATGGTGGCCATAACATTTCTTAATCTGATTGGCATTCCGATGGAGATTGCATTTCTAGATGGCAACAGTGGAGTAGGCTGGGAGGGTTTTAATGTGTTCTCAGACACTCTGTTCCTGATTGACGTGGGTCTTAACTTTCGCATGGGGATCATTAATGAGGACAGTGAGGGAGTAACTCTGGATTTAAAAAGCATTCGACAACAGTATTTGAAAAGCTGGTTTATACCTGATATGGTGGCAGCATTCCCAGTTGGTTACATACTACTTATTGCGGACCTACAATACCACGGTGACTCTCCCTCGTCCAGAGCCAGCAAAATGATGCGCATCTTGATGTTTGTGAGAATCCTCAGCCTTGTCCGCTTGCTACGTGTGTCAAGGCTTGTTAGGTTTTTCAATGAGGTGGAAAGAGTTTCAAATGCCAACTTGGAGGTGGTGAGGGTGTTCCTCAGAATCTTGTCGTTATTTATGATGATTTTCCTGCTCTGCCACTGGAATGGATGTATTCAGTATTTTGTGCCTATGCTTGAGGAGTTTCCCTCAGACTGCTGGGTTAGAAGAGAAAATCTAATGAATGCTACAGTGGGGGAGAAGTACTCTTTTGGAGTCTTTCGGGCCCTCTCTCATATGACTGCAATATCATACGGTTCCTCTGAAACACCCACAAGCAAGGAatgaaGTTGAGCTGTGGATAGTCATGACTAGCATTGTGTCTGGAGCCCTCATGTACACAGTGATGGTCGCCAACACTGCTGTAATGATGACTGATGTGGACATAACAGCAAGAGCGTACAAGAACAAGaTGAATCATATGGAAGATTATATGACTTTCATGAAGCTTCCAAAAGGCCTTCGTATGCGCATCAACAACTTTTTTCAGGCTCGTTATGCAGGAAAATGGTATGATGAGAAGGATGTCCTGAAGTGGGTGTCTTCCTCTCTCAGAGAGGAAATTCTGATGACCATGTGCTCGGCCCATGTGAGAAAAGTTCCCTTTTTCCGGAACTGTGATGTAAACTTCATCAATGCCATTCTTCTGGAGCTGCAGTATGAGAAGTCTACCAGGTGGGAGACATCATCATCCGCCAGAACACTCCTGGTGACCGCATGTTCTTCATCGAACACGGGCAGGTCCTTGTGGAGAATGAGTTCTACCAGAGAGAACTGTGTGATGGAGACTGCTTTGGAGAGTCATGTCTTCTAACAAGAGGAAGGCGTTTGGCCACAGTACAAGCTCTGACTATCTGTCAGCTTTTTTCCTTGTCAGTGGACTCATTTCATTCTGTTCTGAAGGACTTTCCAGACATCAGGAAGTACATGGAGACATTTCAACAGGATAAAgacattttgttatgttgagAATGTAAAATTTAGATCTATCAATGGCACAATTTGCAGCACAACTTTTAACAGTTTTCCTGGAAACCATGATATATCTTTTCAACAAAGAACAGTCTTTGTTTGAAATAGAGATTTTGTTACATtctaaataccttttttttgctAGTACTTTTGATTTAGAAATTTATCTAACGTACCCCAaaattttgaatggtagtgttcattatatacacattatatacaaGTTATTTTAGGTAAGATAggaatttttttagaaatataacaCTACTTAGTAAGGGTAATTAAGGATGCAAGAGCTTAATGCCTTTTGATCTCTATTTTGCAtctctgtttaaattaaattggtaGATGGCTACACTTGCATTAAGCCCCTCCTGCAGCTTTCACAGCATGCACTTTCCCTAAATTGACAGCTTTTCATTACTTGGATCTTCTTCTATATTGGCATAGATTTGGAACATGGTTTTAGAACATTCTGCTCCTGCTGGTGGATGTGGGCTTAAGAATCCCCTTGTTCTACAGCGTTAAACAACAAGCTGTCCAAAAATGGTCTTTGTATAGCAAATAAGGTATGACTTGACAACTGCCTTGGAATGAGATTCCTCTGAGAATACTGATGGGATGATTTTAGACTGTTTGTAGGCCACCTTCTTCAGCTCCTCTTCTCCCTCTTGTCCTCCACTGCTATACTGCTTTCTAAGTGGCCACAAGAGGATGCATAGCTCAAAGAAAAGCATAACCAGCCACAATGTAATTTGTTAGGACCTCTGCTGCATGTTCCTCTAGCAGGTTTCTGCTGGTATGCACCTCCAAGATGGACTCTACGtcttcctctgtcttcttttgAAGTATCCAATTTTACATGAAATGTGTCCCACAAGAGTCAGTAGATTATTTCCAAAAACCAACACATGGATGTGAAAAATCTGTCTGGGCTTTTAAAAAACTCAAactttcaattattattattattttgtgggGGTTGTAGGATGTAGAGATAATTGTAGCACGgtttaaaaagtcaaatgtttataacagtcatattttaaaaaaatatgttaataaaatg

Function

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248414.1 True 3788 mRNA 0.41 9 14579283 14585833
XM_043248415.1 False 3679 mRNA 0.41 10 14579283 14585833

Neighbor

gene id symbol gene type direction distance location
ska3 LOC107724453,LOC107668865,LOC107569224,LOC107597424,LOC107577924 coding downstream 1011 14574795 ~ 14578272 (-)
LOC122351989 LOC107668905,LOC107569207,LOC107724507,LOC101884374 coding downstream 6224 14569810 ~ 14573059 (-)
lats2 lats2,LOC107724484,LOC107569193,LOC107712271,LOC107658249,LOC107668891,LOC107597418 coding downstream 10149 14552182 ~ 14569134 (-)
xpo4 xpo4,LOC107724474,LOC107668883,LOC107569111,LOC107712270,LOC107597380,LOC107658250 coding downstream 27830 14521398 ~ 14551453 (-)
eef1akmt1 n6amt2,LOC107658251,LOC107668884,LOC107597381,LOC107712275,LOC107569169,LOC107724476 coding downstream 57942 14518928 ~ 14521341 (-)
pla1a LOC107724500,LOC107668900,LOC107569279,LOC107712265,LOC107597373 coding upstream 9561 14595394 ~ 14602797 (-)
hsd3b1 hsd3b1,LOC107569293,LOC107658243,LOC107712267 coding upstream 18986 14604819 ~ 14607004 (-)
si:rp71-68n21.9 LOC107724495,LOC107569301,LOC107668845,LOC107597372,LOC107658242,LOC107712264 coding upstream 22250 14608083 ~ 14613939 (-)
hao2 hao2,LOC107724497,LOC107597376,LOC107658196,LOC107712250,LOC107569314,LOC107668850 coding upstream 28893 14614726 ~ 14620909 (-)
wdr3 wdr3,LOC107569352,LOC107712260,LOC107724477,LOC107658238,LOC107668854 coding upstream 163425 14749258 ~ 14758586 (-)
G70382 NA non-coding downstream 16291 14477332 ~ 14562992 (-)
G70332 LOC107724468 non-coding downstream 331955 14244287 ~ 14247328 (-)
LOC122352120 NA non-coding downstream 390282 14173817 ~ 14189001 (-)
G70309 NA non-coding downstream 654447 13924616 ~ 13924836 (-)
G70308 NA non-coding downstream 655179 13923749 ~ 13924104 (-)
G70393 NA non-coding upstream 4025 14589858 ~ 14590275 (-)
G70396 NA non-coding upstream 8430 14594263 ~ 14595342 (-)
G70438 LOC107600383,LOC107655530,LOC107720111 non-coding upstream 330967 14916800 ~ 14918840 (-)
LOC122352110 NA non-coding upstream 351291 14937124 ~ 14942863 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding upstream 389579 14975412 ~ 14981853 (-)
LOC122351495 NA other downstream 206609 14359646 ~ 14372674 (-)
G70317 NA other downstream 325507 14196479 ~ 14253776 (-)
G70294 NA other downstream 639415 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 666340 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 765956 13807822 ~ 13813327 (-)
G70549 NA other upstream 717270 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 803385 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 1185588 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 2134971 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 2231307 16817140 ~ 16823775 (-)

Expression


Co-expression Network