bard1 (LOC107741928,LOC107660605,LOC107602130)


Basic Information

Item Value
gene id bard1
gene name LOC107741928,LOC107660605,LOC107602130
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19546224 ~ 19568760 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248416.1
GTCAAACTCTGATATGAAACAGGATTAGAGAGGCTTTTTTGGCGCTGTTTAATGGCAGCTGTGCTTTAGTTTCATAATGAAAGCAGTAGAGACATCCTGCCCAGTCCCggtcattttgatttaatcTTGCAGCTCGTCCCTTATGAGAGAGCCGCTGTACCTTGAACGTATACTTAGCAGATCTTGTTCAGGACCCCATATGCTGGAGCAAACTGGAGTCCCGCTTGAACCCCTCAGAGTCCTCAAGCATGGTCTCCGATACCAAGAAGTCGGATGAGAGCTTTATCCCTAGGAATAAgaagaacataaaaatatggTTTAGCCCAAAGAGTCGCAAAGTTCGCTGTTGCATTGAGAAACCTGTTAActcaaacaaatcaaatgaattcCAGGAAAAGAAAGCCAATACATCACCTGCTTCAAAGGACCTGTCCGTCTACAACTTCACCTCTTCCTCCCAGGAGTCTGGGACATCCTCTCCTCCACGGGGGAAGGCcaatatgaaaataaagaaaaaaagaatcagCCAAACCTGCAAAGCAACTGGTGGTGCTCAAAGGCTCAAAACGTGGACTACGCAAGAATGTAAGAGGCTGAGGCTGGAAGCTATCAATCAACAGTGGGCCTTTGGAAAAGAAGGTGCTGTAGACAAGGATGTAGAAGATGAGAAAGTGAGTTCTGGAGATGACAACAGGAGGTCCGGTATGAGAGTTACTTTCCATTTCCCTCACAGCCAGCCTGAGGAGACTCGTAAGGCTGTCCATCAAGAACAGAATCAAGTTCCCCAAAAAAGCATCCCAAGCAATTTGGAAGTTGAAGAAACTGAGAAGCAAAGCTCTGCAGCTTCCAGTTCACCATATTGCGATCAACAGGTTAAACCTGTCACTGATGTCCCGCAGGAATCCAATGAAAACACTCCAGGGCCTCCTCGGTTGTCCCTTGACAAAGTGCATGAGAGAACCAGAGAGGATCAGGACAGCGAGGATCCACAGAGGACACCAAAACAACGGCGAACATCTTCAGGATGGAGGAAGACGTCATCTAAAGAAGGAGCTGTTTCCACTAAAGGCCGCTCTCGGAGTCTGACAGTGTCCAAACAGTCCTGTGAGAAGCAGAATGCGGTGCCAGCTACCCCTCACCTTAAGAGGAAGTCTTCAAGTGCGAGACACAAGGCAGGTCCTGCTTACATGAAAAAGAACCACAATGGAGAGACACCACTGCACTTAGCTGCCGTAAAGGGTGATGTGGAGGAGGTCCGTAAGCTCCTTGCTCAGGGAGCCGACCCCAACCTGAAGGACAACGCGGGCTGGACACCACTGcacGAGGCTTGTAATCTGGGTCACCTGGGAGTGATGGAGGAACTGCTCAGGCAGGGGGCGCTCTTGAACACTCCAGGCTACCAGAATGACTCTCCATTGCACGACGCCGTGAGAAACGGTCAGATACCGGTGGTCAAGCTTTTGGTTGAACGCGGCGCTTCCCAAAGTGTCCTaaatatgttTGGCCTGCGGCCGGTAGATTATGCGCTGACTCCAGAAATGCAGGAGGTCCTAAGAACGGCCCCGGAGGCACCTCATCCTGTAACAACCACCCCGAACCCCCCCGCCAGCCCGAGTGAGGCTGCGGGCTTTGTGCGAGAGACGGGTCCAGTGGTTGTGATTGGCAGTCAGCTGACGCAGACTCAGCAGAAGCAGCTCACCAAAGCAGCTCAACTCCTTGGAGGGAAACAAGTGCGCTCCTTTTGTAGAGCAGTCACCCATGTGGTTGTACCAGATGTTCCCATCATGCCCTCGTCCCTGACCGCACTTCGGGGTGTCCTCAACGGCTGCTGGATCCTCACTTTCAGCTGGGTGAGTTGTAGCCTTCAGGCAGGCAGCTGGGTCGGGGAGTGTGAGTACGAGGCAGGTGACGGCCCCTTGCGTGCCCGCGTGAACAGAGGCAGCCTGCTCCCTCCCCTATTTGATGGCTGCTTCTTCTACATGCTGGGCTCCTTCTGCAAGCCACCAAAACTAGAGCTCATTCAGTTAGTGAAAGAAGGTGGTGGACAGCTTCTGAATCGCCAGCCCAAACCCGACAGCGACGTCACACAAACCCTGAGCGCAGCGGCCTACCATGCCCAGCCTGGTTCAGACCAGATTCTCTGTACCCAGTATATCTTATATGATCCTCAGAGCTCCTACAAACCCCAGAAGGTCAGAGTAGGTAAGGTCTGGTCGGCTCCATCCACATGGTTTCTGGAATGCATAGCTGCCTTTCAACTCCTGCCAGTGCCAGAGCACTAGGCCTTATACTCGGTGTGTTATTGTTTCAGCTTCACAACatcaaa
>XM_043248417.1
TTCGTTAAGCCCCTCCCCTTCGGTTCCCGCGTTCTTTTGCTTCAGAACAGATCTTGTTCAGGACCCCATATGCTGGAGCAAACTGGAGTCCCGCTTGAACCCCTCAGAGTCCTCAAGCATGGTCTCCGATACCAAGAAGTCGGATGAGAGCTTTATCCCTAGGAATAAgaagaacataaaaatatggTTTAGCCCAAAGAGTCGCAAAGTTCGCTGTTGCATTGAGAAACCTGTTAActcaaacaaatcaaatgaattcCAGGAAAAGAAAGCCAATACATCACCTGCTTCAAAGGACCTGTCCGTCTACAACTTCACCTCTTCCTCCCAGGAGTCTGGGACATCCTCTCCTCCACGGGGGAAGGCcaatatgaaaataaagaaaaaaagaatcagCCAAACCTGCAAAGCAACTGGTGGTGCTCAAAGGCTCAAAACGTGGACTACGCAAGAATGTAAGAGGCTGAGGCTGGAAGCTATCAATCAACAGTGGGCCTTTGGAAAAGAAGGTGCTGTAGACAAGGATGTAGAAGATGAGAAAGTGAGTTCTGGAGATGACAACAGGAGGTCCGGTATGAGAGTTACTTTCCATTTCCCTCACAGCCAGCCTGAGGAGACTCGTAAGGCTGTCCATCAAGAACAGAATCAAGTTCCCCAAAAAAGCATCCCAAGCAATTTGGAAGTTGAAGAAACTGAGAAGCAAAGCTCTGCAGCTTCCAGTTCACCATATTGCGATCAACAGGTTAAACCTGTCACTGATGTCCCGCAGGAATCCAATGAAAACACTCCAGGGCCTCCTCGGTTGTCCCTTGACAAAGTGCATGAGAGAACCAGAGAGGATCAGGACAGCGAGGATCCACAGAGGACACCAAAACAACGGCGAACATCTTCAGGATGGAGGAAGACGTCATCTAAAGAAGGAGCTGTTTCCACTAAAGGCCGCTCTCGGAGTCTGACAGTGTCCAAACAGTCCTGTGAGAAGCAGAATGCGGTGCCAGCTACCCCTCACCTTAAGAGGAAGTCTTCAAGTGCGAGACACAAGGCAGGTCCTGCTTACATGAAAAAGAACCACAATGGAGAGACACCACTGCACTTAGCTGCCGTAAAGGGTGATGTGGAGGAGGTCCGTAAGCTCCTTGCTCAGGGAGCCGACCCCAACCTGAAGGACAACGCGGGCTGGACACCACTGcacGAGGCTTGTAATCTGGGTCACCTGGGAGTGATGGAGGAACTGCTCAGGCAGGGGGCGCTCTTGAACACTCCAGGCTACCAGAATGACTCTCCATTGCACGACGCCGTGAGAAACGGTCAGATACCGGTGGTCAAGCTTTTGGTTGAACGCGGCGCTTCCCAAAGTGTCCTaaatatgttTGGCCTGCGGCCGGTAGATTATGCGCTGACTCCAGAAATGCAGGAGGTCCTAAGAACGGCCCCGGAGGCACCTCATCCTGTAACAACCACCCCGAACCCCCCCGCCAGCCCGAGTGAGGCTGCGGGCTTTGTGCGAGAGACGGGTCCAGTGGTTGTGATTGGCAGTCAGCTGACGCAGACTCAGCAGAAGCAGCTCACCAAAGCAGCTCAACTCCTTGGAGGGAAACAAGTGCGCTCCTTTTGTAGAGCAGTCACCCATGTGGTTGTACCAGATGTTCCCATCATGCCCTCGTCCCTGACCGCACTTCGGGGTGTCCTCAACGGCTGCTGGATCCTCACTTTCAGCTGGGTGAGTTGTAGCCTTCAGGCAGGCAGCTGGGTCGGGGAGTGTGAGTACGAGGCAGGTGACGGCCCCTTGCGTGCCCGCGTGAACAGAGGCAGCCTGCTCCCTCCCCTATTTGATGGCTGCTTCTTCTACATGCTGGGCTCCTTCTGCAAGCCACCAAAACTAGAGCTCATTCAGTTAGTGAAAGAAGGTGGTGGACAGCTTCTGAATCGCCAGCCCAAACCCGACAGCGACGTCACACAAACCCTGAGCGCAGCGGCCTACCATGCCCAGCCTGGTTCAGACCAGATTCTCTGTACCCAGTATATCTTATATGATCCTCAGAGCTCCTACAAACCCCAGAAGGTCAGAGTAGGTAAGGTCTGGTCGGCTCCATCCACATGGTTTCTGGAATGCATAGCTGCCTTTCAACTCCTGCCAGTGCCAGAGCACTAGGCCTTATACTCGGTGTGTTATTGTTTCAGCTTCACAACatcaaa

Function

NR:

description
BRCA1-associated RING domain protein 1

GO: NA

KEGG:

id description
K10683 BARD1; BRCA1-associated RING domain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248416.1 True 2326 mRNA 0.51 10 19546224 19568620
XM_043248417.1 False 2196 mRNA 0.52 10 19546224 19568760

Neighbor

gene id symbol gene type direction distance location
ikzf2 si:zfos-1425h8.1,LOC107741927,LOC107660609,LOC107662042,LOC107721023,LOC107556196,LOC107568511 coding downstream 261001 19259729 ~ 19285223 (-)
LOC122351886 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 coding downstream 297049 18980278 ~ 19249175 (-)
myl1 myl1,LOC107721018,LOC107673729,LOC107596080,LOC107660614,LOC107555938 coding downstream 656169 18885444 ~ 18890055 (-)
tgfbr2l si:dkey-101k6.5,LOC107660622,LOC107741917,LOC107555932,LOC107714146,LOC107673748,LOC107596078 coding downstream 825777 18709228 ~ 18720447 (-)
znf142 LOC107741908,LOC107555924,LOC107660628,LOC107714222,LOC107596070,LOC107673749 coding downstream 897169 18642470 ~ 18649055 (-)
abca12 LOC107657499,LOC107714367,LOC107602131,LOC107660608,LOC107741931,LOC107565025 coding upstream 408 19569168 ~ 19634801 (-)
pofut2 LOC107741944,LOC107660604,LOC107714363,LOC107657505,LOC107565035 coding upstream 67691 19636451 ~ 19642933 (-)
pms1 pms1,LOC107602147,LOC107728929,LOC107660601,LOC107714373,LOC107565013 coding upstream 116130 19684890 ~ 19708970 (-)
adat3 LOC107728938,LOC107714375,LOC107681677,LOC107565014,LOC107660599,LOC107602133 coding upstream 144725 19713485 ~ 19716443 (-)
asnsd1 asnsd1,LOC107728934,LOC107660596,LOC107714374 coding upstream 165140 19733900 ~ 19736121 (-)
G71587 NA non-coding downstream 2377 19458787 ~ 19543847 (-)
LOC122351304 NA non-coding downstream 20634 19519740 ~ 19525590 (-)
LOC122351387 NA non-coding downstream 38139 19496912 ~ 19508085 (-)
LOC122351235 NA non-coding downstream 87124 19443445 ~ 19459100 (-)
LOC122351981 NA non-coding downstream 291976 19251637 ~ 19254248 (-)
G71667 cunh2orf88,LOC107728910,LOC107657540,LOC107714370,LOC798500,LOC103027948 non-coding upstream 98240 19667000 ~ 19671164 (-)
LOC122351289 NA non-coding upstream 105971 19674731 ~ 19681399 (-)
G71645 NA non-coding upstream 140624 19709384 ~ 19712184 (-)
G71692 NA non-coding upstream 222487 19791247 ~ 19791560 (-)
G71727 NA non-coding upstream 318415 19887175 ~ 19941547 (-)
LOC122352185 NA other downstream 976342 18569755 ~ 18569882 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other downstream 1179957 18251236 ~ 18366267 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 2024664 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 2290733 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 2656677 16886753 ~ 16889547 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 151182 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 227492 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 265160 19833920 ~ 19852625 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other upstream 312790 19881550 ~ 19893315 (-)
G71938 nab1,LOC107565022 other upstream 920404 20489164 ~ 20503890 (-)

Expression


Co-expression Network