Item | Value |
---|---|
gene id | mycbp2 |
gene name | mycbp2,LOC107549765,LOC107664005 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056707.1 |
NCBI id | CM032076.1 |
chromosome length | 26426558 |
location | 3670562 ~ 3742739 (+) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
mycbp2 | Enables ubiquitin-protein transferase activity. Acts upstream of or within several processes, including axonogenesis; habenula development; and regulation of pteridine metabolic process. Located in cytoplasm. Is expressed in several structures, including eye; heart; integument; liver; and testis. Orthologous to human MYCBP2 (MYC binding protein 2). |
description |
---|
E3 ubiquitin-protein ligase MYCBP2 isoform X8 |
id | name | namespace |
---|---|---|
GO:0042068 | regulation of pteridine metabolic process | biological_process |
GO:0031290 | retinal ganglion cell axon guidance | biological_process |
GO:0016198 | axon choice point recognition | biological_process |
GO:0016567 | protein ubiquitination | biological_process |
GO:0021986 | habenula development | biological_process |
GO:0005737 | cytoplasm | cellular_component |
GO:0005515 | protein binding | molecular_function |
GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
K10693 | MYCBP2, PAM; RCR-type E3 ubiquitin transferase |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043248433.1 | True | 15678 | mRNA | 0.54 | 86 | 3670562 | 3742739 |
XM_043248434.1 | False | 15669 | mRNA | 0.54 | 86 | 3670562 | 3742739 |
XM_043248435.1 | False | 15666 | mRNA | 0.54 | 86 | 3670562 | 3742739 |
XM_043248436.1 | False | 15654 | mRNA | 0.54 | 86 | 3670562 | 3742739 |
XM_043248437.1 | False | 15603 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248438.1 | False | 15594 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248439.1 | False | 15579 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248440.1 | False | 15573 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248442.1 | False | 15570 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248443.1 | False | 15570 | mRNA | 0.54 | 86 | 3670562 | 3742739 |
XM_043248444.1 | False | 15567 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248445.1 | False | 15549 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248446.1 | False | 15513 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248448.1 | False | 15495 | mRNA | 0.54 | 85 | 3670562 | 3742739 |
XM_043248449.1 | False | 15462 | mRNA | 0.54 | 84 | 3670562 | 3742739 |
XM_043248450.1 | False | 15414 | mRNA | 0.54 | 84 | 3670562 | 3742739 |
XM_043248451.1 | False | 15381 | mRNA | 0.54 | 84 | 3670562 | 3742739 |
XM_043248452.1 | False | 15354 | mRNA | 0.54 | 84 | 3670562 | 3742739 |
XM_043248453.1 | False | 15345 | mRNA | 0.54 | 83 | 3670562 | 3742739 |
XM_043248454.1 | False | 15330 | mRNA | 0.54 | 83 | 3670562 | 3742739 |
XM_043248455.1 | False | 15237 | mRNA | 0.54 | 83 | 3670562 | 3742739 |
XM_043248456.1 | False | 15084 | mRNA | 0.54 | 82 | 3670562 | 3742739 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
vwa8 | vwa8 | coding | upstream | 85871 | 3507925 ~ 3584691 (+) |
epsti1 | epsti1,LOC107549908 | coding | upstream | 286385 | 3363734 ~ 3384177 (+) |
enox1 | enox1,LOC107661308,LOC107713727,LOC107561323,LOC107688647 | coding | upstream | 532617 | 3054362 ~ 3137945 (+) |
tsc22d1 | tsc22d1,LOC107551985,LOC107748883,LOC107713726,LOC107576221,LOC107561310,LOC107688650 | coding | upstream | 654053 | 2978307 ~ 3016509 (+) |
kctd4 | kctd4,LOC107748885,LOC107688678,LOC107713709,LOC107580010 | coding | upstream | 702597 | 2966046 ~ 2967965 (+) |
fbxl3a | fbxl3,fbxl3a,LOC107549764,LOC107664003,LOC107670904 | coding | downstream | 1267 | 3744006 ~ 3752623 (+) |
rsph1 | rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994 | coding | downstream | 12077 | 3754816 ~ 3759215 (+) |
stx19 | stx19,LOC107664001,LOC107749033,LOC107728237 | coding | downstream | 18094 | 3760833 ~ 3767537 (+) |
LOC122351330 | LOC107571834,LOC107657380,LOC107716910 | coding | downstream | 164002 | 3906741 ~ 3910820 (+) |
LOC122351193 | rapgef4,LOC107742951,LOC107671325 | coding | downstream | 183152 | 3925891 ~ 3945608 (+) |
LOC122351161 | NA | non-coding | upstream | 23948 | 3642961 ~ 3646614 (+) |
G67418 | NA | non-coding | upstream | 32480 | 3601318 ~ 3638082 (+) |
LOC122351601 | LOC107749038,LOC107663997 | non-coding | upstream | 51256 | 3606570 ~ 3619306 (+) |
LOC122351351 | NA | non-coding | upstream | 78322 | 3586803 ~ 3592240 (+) |
G67396 | NA | non-coding | upstream | 228818 | 3437097 ~ 3441744 (+) |
G67448 | NA | non-coding | downstream | 86084 | 3828823 ~ 3829772 (+) |
G67562 | LOC107588232,LOC107742953,LOC107671312,LOC107657349 | non-coding | downstream | 203795 | 3946534 ~ 4031820 (+) |
G67604 | NA | non-coding | downstream | 295857 | 4038596 ~ 4038822 (+) |
G67606 | NA | non-coding | downstream | 321898 | 4064637 ~ 4064961 (+) |
G67637 | NA | non-coding | downstream | 413917 | 4156656 ~ 4157963 (+) |
LOC122351398 | dnajc15,LOC107549910 | other | upstream | 390510 | 3262607 ~ 3280052 (+) |
LOC122351419 | polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 | other | upstream | 473944 | 3194773 ~ 3196618 (+) |
bpifcl | bpi | other | upstream | 1934242 | 1713812 ~ 1736320 (+) |
G66795 | NA | other | upstream | 2535573 | 1127526 ~ 1134989 (+) |
LOC122351650 | si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 | other | upstream | 2771183 | 858680 ~ 899379 (+) |
LOC122352174 | rbm45,LOC107716918,LOC107752596 | other | downstream | 170899 | 3913638 ~ 3922878 (+) |
G67566 | LOC107742952,LOC107718452,LOC107671286,LOC107715667 | other | downstream | 205297 | 3948036 ~ 3983582 (+) |
cdca7a | LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 | other | downstream | 238607 | 3981346 ~ 3985962 (+) |
scrn3 | scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 | other | downstream | 377788 | 4120527 ~ 4127013 (+) |
G67630 | NA | other | downstream | 398315 | 4141054 ~ 4222171 (+) |