cln5 (LOC107749021,LOC107664004,LOC107549926,LOC107670900,LOC107728242,LOC107549738)


Basic Information

Item Value
gene id cln5
gene name LOC107749021,LOC107664004,LOC107549926,LOC107670900,LOC107728242,LOC107549738
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3750722 ~ 3754664 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248459.1
tttattttgacagtccgTAACAAAAACAGCTCGTGACTGACCGGATGACTTCATTAAGAGAGTCACGTGATCAGCGTTCTCTAAAGTAAGGATGTGAGACAGAAACGATCATATAGACAGCGCATTAGTGTTTTCGAGAGCCTGCGCTGACATGAACTATCGGGTGTACTGGGTTCACGCGGCGGCGCTGCACTGTTGGATTGTGGGATCGCTCGCTTCCAGCGTCGGCGGACAGCAGGTCTGGCCAGTGCCTTACAAGCGACTTGACAGGCGTCCAGATGTTGACCCCTACTGCCAGGCGTTATACCCGTTCTGCCCGAGCGGGGACCCGGGCGGCCGGATACCTGCGATGAGAGACTCGGACGTCGTGTCCGTGTTCAGGCTGCAGACTCCGGTGTGGGAGTTCAAGTACGGGGACGCGCTGGGGAAGCTCCACATCATGCACGACGCCGTCGGCTTCGGAAGCGCGCAGACGGGGAGAAACTTCACCGTGGAGTGGTACGAGCTCTTTCAGCTGGGCAACTGCACCTTCCCGCACGAGAGAGCGAGCGTGCGCGCGCCCTTCTGGTGCAACCAGGGAGCCGCGTGCTTCTACGAGGGCATCGACGACCTGCACTGGAAGCAGAACGGGACGCTGGAGAAGATCGGGGAGCTTTCAGGCGAGATGTTCAACGAGGTGGCTCGCTGGGTTCAGGAGGACAACCAAACGGGTGTTTATTATGAGACTTGGACGGTTAAGTCAGATCCCGGTGCAAACGCCACAACATGGTTCGAGTCCTACGACTGCTCTCAGTTTGTGCACCGCACGTATAAGACCTTGCTGGATATGGGCGCCCAGCTGTCCAGCCCAACGCCCACCTATTACACCAAGATCTATCTGTTCAGCGGAGAGCCGCTCTATTTGGGAGACGACGCCATCTTTGAGCAGCCTTCCACGAAAGGCCTGGCCGCAGACATCAAGAAGTTCTACCACGCGTTTCGCTCTCACCAGTCGGTCGTAGAAATGATCGAGAGCTTGCTGGAGGCTTTCGAAAAGACGGTCCTGGAGAAGACCTTCTATTTCTACTACAACTCTCAATATTGGAAGCTGCCTATGAAATACccttacattaaaataacctACGAGGAGATTTCTTTACCGTAACCACCATATTTTTTCCCTAAAcaatattaaagttatttttgctactaaataaaatgacattttttttttaatgcttttttattccTATTCCAGATTTTTCGTATAAAGCGTTTAATAATTTATACTAACACAATAAtcctttaatgttttattgctgCGACTGCATTGATGAATAAATGATCTGTAAAGCATCCACAATTTTTCCACACAATGTTTATTTGCCCTTATTTCAATAAAAGACAATGTTTTTTacgcacaaacacaaagaaacaatgCTTTTATATTCGCAATACAAGCAATATGCTCACTTgcttcagaaaaaataaaaataatcaaatcaaatgcatttgtCGTGTGTACGTTTTACTCATTTCCTATGCTCAGGATTACACGTTGATGCAACAAGCTAGTCTAACAAAAAGCTTCTTGTGTCAAATCGGCAAGCTACGCGCTGCTGACTAAAGAAGAGCTCGTggatttgtgtgtgcgtgtcaaCTGCTGGGCTCTGGCTTCCCTTTTCCGAtcatttttagtaatatttcactttcaaaTGCTGAGAGGAATCGCAGTTCACTTGATTTAGGCTCTACAACCATTAGCGAAAGCTAAAACCGCTTTAAATCCGGATAACTGGTTCAAATGAATCATGGTTACTGACTTTACAAACATTAAACCAACAAGGAGCCTCTTACTCAAAGCTCAACTATCAATGTAAGccgattaataataataaaaaatacgcATCAATAAATTACACCGATCAAATCTAATTACAAGGGTACGAAGATCCATCAAAGAGTAATACCCACTCATCTGAAAGAGATCAGCACGGGTACACTTCAAACCTCCACAGAGGGCGCGCGAGAAATaagtatttctatttatatcaaacacacagcatttttatatacagaCACGTGGGACTTCCTTCTTAAAGGAAAATGCTTTCGCTGCTTCACTCCAATACTGGATCATATTGAACTGAAACCAAGGGGCACATTTTAACGCAGCCAGACCGTGCATATCCAGAGTAATTCGCATCCCGTTCGATTTGCCGTCGCACGACATTCTTCACGCAATCTAATAAAATCTAACTCAACGCTTCATTGTATCCCTTCACCATTTTCTTCCAAATTATAGGACGCCAGTGAGCCGAACACCGATCCTTTCACCTCCTTCCCCTACGACATACCCAAGACCGTAAAAACACGCTGTTTTATCACCCTGCTACACCAAAATACGAGCCACCTTTAGCTTTCTACTCACCTGAACCACCAAAAACTGATTCCAATTTGGTATAAGGTGCATATTATTCACTATACATCTTTGTACAAAAGCACTGCAATACCAAACCTCTTATATTACAAAACGTTCGAATCGCGTAAAATATAGTTCCATCGACTATCTACATAAAGCCGAAAGCCCAACCCTGATGGTCCTGCGCTACTTTTTAGGTTCATCTTCGTGTTGGCGAACACAGTGAGAGGCCACTAGTTAGCAAGAGACAACCGCTCTCACTAGTTCTATGGCTTTTCATGCCACTAAGAGGAGCCGCTGAAGGCTCCTAGAGAGAGCCTGCCGTTCAAAGCAGATTCAGATTGGTCAGTTTAGTCAAAACAATGCTGGGATGGGCTCTAACATCCCCCGCGGACAGGCGTTTGGGTGAAAAAAAGGATGGTTGGTTGCTTAAACGTTGAGCCACTGAAGACATACAGATACACAGCGGGACTAAGAAAGAGTGAAGAGTCTGCTGAGAGCGTCTACAAAGACAGAGAGCCTGTTCATCTAAATACACGAGTGATGAATATCTGCATCGACATGAACTCATTTCAGTTGCAGGTTCTTTTCTAGATtcaatttctcatttttatccTGCACGCAACCTGAAAACGTAACTTACAGTATATACATGCCATGTACGGCGATCCTTGATTTAGGTTTATAAAAGGAAATGTCAATag

Function

NR:

description
ceroid-lipofuscinosis neuronal protein 5 isoform X1

GO:

id name namespace
GO:0022008 neurogenesis biological_process
GO:0005764 lysosome cellular_component

KEGG:

id description
K12390 CLN5; ceroid-lipofuscinosis neuronal protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248459.1 True 3105 mRNA 0.45 4 3750722 3754664

Neighbor

gene id symbol gene type direction distance location
scel scel,LOC107749035,LOC107670903,LOC107663996,LOC107713739 coding downstream 113134 3627501 ~ 3637588 (-)
slain1a LOC107663999,LOC107549929,LOC107670892,LOC107549760,LOC107713716,LOC107749036 coding downstream 124908 3616257 ~ 3625814 (-)
wu:fc50b12 LOC107549762,LOC108232414 coding downstream 134523 3614518 ~ 3616199 (-)
kbtbd7 kbtbd7,LOC107549928,LOC107713735,LOC107664000,LOC107549759,LOC107670891 coding downstream 136678 3610456 ~ 3614044 (-)
zgc:101559 zgc:101559,LOC107663997,LOC107749038,LOC107713736,LOC108435193,LOC108232329,LOC106527128 coding downstream 140338 3607486 ~ 3610384 (-)
sp3a LOC107742953,LOC107718453,LOC107671312 coding upstream 274798 4029462 ~ 4038457 (-)
cir1 cir1,LOC102235890 coding upstream 319371 4074035 ~ 4120043 (-)
gpr155a gpr155,LOC107657393,LOC107600701,LOC107671327 coding upstream 372702 4127366 ~ 4140120 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC105007244 coding upstream 404196 4158860 ~ 4196267 (-)
atf2 atf2,LOC107671311,LOC107739459,LOC107657392,LOC107742976,LOC107600703 coding upstream 443253 4197917 ~ 4218494 (-)
G67491 NA non-coding downstream 7989 3672527 ~ 3742733 (-)
G67490 mycbp2,LOC107749028 non-coding downstream 79646 3642447 ~ 3671076 (-)
G67475 vwa8 non-coding downstream 169513 3580842 ~ 3581209 (-)
G67384 NA non-coding downstream 362537 3387931 ~ 3388185 (-)
G67383 NA non-coding downstream 365512 3384867 ~ 3385210 (-)
G67537 NA non-coding upstream 74354 3829018 ~ 3829643 (-)
G67581 NA non-coding upstream 190655 3945319 ~ 3946905 (-)
G67597 zak,LOC107657350,LOC107718456,LOC107600726,LOC107671274,LOC107742952,LOC107588248 non-coding upstream 224611 3979275 ~ 3981190 (-)
LOC122351402 NA non-coding upstream 234928 3989592 ~ 4023394 (-)
G67605 NA non-coding upstream 291822 4046486 ~ 4046713 (-)
dgkh dgkh,LOC107713732,LOC107549907 other downstream 243430 3437756 ~ 3507292 (-)
G67358 gpx4a other downstream 556230 3189847 ~ 3194492 (-)
serp2 NA other downstream 705415 3017043 ~ 3045307 (-)
LOC122352064 galnt13,galnt1,LOC107671291,LOC107566748,LOC106586166,LOC107657719,LOC107687813,LOC107723435,LOC107706221,LOC107593713 other downstream 911768 2807924 ~ 2838954 (-)
LOC122352168 galnt13,LOC107657405,LOC107566748,LOC107671291,LOC107559530,LOC107745272 other downstream 952128 2763420 ~ 2798594 (-)
G67668 NA other upstream 365799 4120463 ~ 4122103 (-)
wipf1a LOC107657348,LOC107600727 other upstream 387626 4142290 ~ 4150239 (-)
pde11a pde11a,LOC107657382,LOC107671328 other upstream 861178 4615842 ~ 4666654 (-)
LOC122351499 LOC107670334,LOC107747232 other upstream 1037760 4792424 ~ 4822965 (-)
LOC122351456 LOC107747234,LOC107560802,LOC107670305,LOC107752600,LOC107689492,LOC107549748,LOC101883674 other upstream 1101986 4856650 ~ 4973955 (-)

Expression


Co-expression Network