rsph1 (rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994)


Basic Information

Item Value
gene id rsph1
gene name rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3754816 ~ 3759215 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248460.1
ttaaaaatgaaaaacgtaCACTAAAATCAAGCAAGAGGAGTCAAAAGCAACTTTATGATTACTGTTTCCCAATCGTTGTGTGTGGACTTTTGTAAagtaataagaaatatttgtaaCTTTTTGCATTTGTCTCCAACGTCCCGATTCAACTTAAAGCATTGGTAAGCACGTTTTGATAAGAACCATTCAGCGAAGTGTATCCATCGATGAAAAGTGAgagatacagtaaaaaaagtaaatactatataatattatactaaaAGTATTTTGTGTTTCGTTTATATTAACGCGTCAGAGCACTGCCTTTCACTTCGTTccaatacaaatgtatttaatgtattttagatagatttatttattggtttaataacaaacaaacacaatgtaGGAAATACAAGAAATATAAGGTAGTGTCTACAGTTCAAAGTATGCGCAacagatgataataataataataataataataataataataataataataataatgagagtAAAATtaacatatgcatataaaaataatgatacaaAAGTAGGATATAAAGTTGTGTATGAGAAAGTGTTCTTGGTCGGAAGTTGTTTTGCGCGTGCCCGTTCCTCACGCGCGTCGCTATGGTAACAGTAAACAGTCCCGAAGCCGCCGCTCTGTCGTTGTTCTCCGCTCATCGGTCTCTGGTTCATCATGTCAGACGTTGGCTCTGAAGAGTTTGACGAAGAGCAAGGCTCTCTGGGGGAGTATGAAGGAGACAGAAACGAAGCTGGAGAGAGACACGGACACGGCAAAGCTGTCCTGCCGAGTGGAGACACTTACCAAGGAGCTTATGAAAACGGCAAGAGAAGTGGCCAGGGGACATACAAGTTCAAGAAAGGGGCCAGATACATTGGAGAATGGTACATGAATTTAAAACATGGACAGGGTTTGTTTTATTACCCGGACGGCTCTAAATATGAAGGAAGCTGGGTGGATGACCAGCGGCAGGGTCATGGTGTTTACACATACCCCAATGGAGACACGTATGATGGTGAATGGCTACACCAccaaagACATGGGCAGGGTACATACACACATCACGAAACTGGGTCTCAGTACATGGGCACATGGGTCATGGGAAAGATGGAGTCCGCCGGGGAGCTGATCCACCTGAACCACAGATATCAGGGCAACTTTGTCAATAATAATCCGTCTGGTCCGGGGAAGTACGTCTTTGACATTGGGTGTGAGCAGCATGGAGAGTATTTCCAGTTAGAGCCGGACAAGGGAGAAGCGGAGGAAGATGAGACTGTCGTAACCACCACCTTAAAGTGGAAACCCAAGGCAGTTACCGGGCTTTCCGTCTGGACCGATGAGAAGGATTCTGCCTCCTCAGGTGCTCCCCTATCCAGTCCTGAATATCAAACACACTGATCTGATGATGTACCGTTGCGTCGTTTGTGGTCACCTTCTCTCACCTTTTCTATTCACAGCTATATCAAGCCAAGATGGAAAAGTGAGAAAGACGTACACACAGtgagaaacacagaaagaaagaaataaaggagCACGTATCTGACTTCTCATGATTAGCGACAGTGGGATCCTATATCAGCCCGAGACTTTCTGATTGTACATTATCATGCTTATTACATGACTtcttgacaaataaataaacggaCATTAACTGTT

Function

symbol description
rsph1 Is expressed in Kupffer's vesicle; forerunner cell group; neural tube; pronephric duct; and spinal cord. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 24. Orthologous to human RSPH1 (radial spoke head component 1).

NR:

description
radial spoke head 1 homolog isoform X2

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007283 spermatogenesis biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19755 RSPH1; radial spoke head protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248460.1 True 1663 mRNA 0.41 8 3754816 3759215

Neighbor

gene id symbol gene type direction distance location
fbxl3a fbxl3,fbxl3a,LOC107549764,LOC107664003,LOC107670904 coding upstream 2193 3744006 ~ 3752623 (+)
mycbp2 mycbp2,LOC107549765,LOC107664005 coding upstream 12077 3670562 ~ 3742739 (+)
vwa8 vwa8 coding upstream 170125 3507925 ~ 3584691 (+)
epsti1 epsti1,LOC107549908 coding upstream 370639 3363734 ~ 3384177 (+)
enox1 enox1,LOC107661308,LOC107713727,LOC107561323,LOC107688647 coding upstream 616871 3054362 ~ 3137945 (+)
stx19 stx19,LOC107664001,LOC107749033,LOC107728237 coding downstream 1618 3760833 ~ 3767537 (+)
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding downstream 147526 3906741 ~ 3910820 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding downstream 166676 3925891 ~ 3945608 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding downstream 188803 3948018 ~ 3981211 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding downstream 350435 4109650 ~ 4112225 (+)
LOC122351161 NA non-coding upstream 108202 3642961 ~ 3646614 (+)
G67418 NA non-coding upstream 116734 3601318 ~ 3638082 (+)
LOC122351601 LOC107749038,LOC107663997 non-coding upstream 135510 3606570 ~ 3619306 (+)
LOC122351351 NA non-coding upstream 162576 3586803 ~ 3592240 (+)
G67396 NA non-coding upstream 313072 3437097 ~ 3441744 (+)
G67448 NA non-coding downstream 69608 3828823 ~ 3829772 (+)
G67562 LOC107588232,LOC107742953,LOC107671312,LOC107657349 non-coding downstream 187319 3946534 ~ 4031820 (+)
G67604 NA non-coding downstream 279381 4038596 ~ 4038822 (+)
G67606 NA non-coding downstream 305422 4064637 ~ 4064961 (+)
G67637 NA non-coding downstream 397441 4156656 ~ 4157963 (+)
LOC122351398 dnajc15,LOC107549910 other upstream 474764 3262607 ~ 3280052 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other upstream 558198 3194773 ~ 3196618 (+)
bpifcl bpi other upstream 2018496 1713812 ~ 1736320 (+)
G66795 NA other upstream 2619827 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 2855437 858680 ~ 899379 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 154423 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 188821 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 222131 3981346 ~ 3985962 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other downstream 361312 4120527 ~ 4127013 (+)
G67630 NA other downstream 381839 4141054 ~ 4222171 (+)

Expression


Co-expression Network