si:dkey-91i10.3 (si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015)


Basic Information

Item Value
gene id si:dkey-91i10.3
gene name si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13777626 ~ 13783452 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248469.1
atttttttccccacatttaatttgtttactcGTGTTCAATTTCAATGACCGAATCTAACTGAACTAATAAGTAAAAAATGAGTCTAGATTATTGCTTTAGTGTGAATTTACTACTTCTACATTCTATTGTACAGGCGTCCATTTActtttccttcagcctgaggATCATTCATTTAACTTTTGGTATGAAAGAGCTTTTGCGTTTGCCAAAAATAGaacctttttatattaaaaatagacaaGCCAGCCCTgcccaatttttatttttttttttaaagttgacGTAACGCATTACTTTCCATGAAAAGTAACAGTTACTTTTTTTAGTGAGTAACGCAATATTATAATGTCAAAAGTAACTTTCCTCGACActgctgaagactggagcaatcgTTGGAACAGCTTCGGACTGGTTTaacacatcaaataaatgcagcctcgacTTTTCTCAAAAGTTTTCACTGACTCTGTGGTATACGTGAAGTAGCGGTAATAACGCTGGAGACTTCGACGGAATCTCAACTGCAGCATTCACCCACGATAACAAGAGAGTTTACTCAAGTTCATTTGCAGGGGAAGAGTCTCTCTTGGCACAGACTACCATTACGAAGAAAAATAGCTCACTGCTGTATCAGGACTATTGTACAGACTGTGCTGGGGACAGCGAGAGTAGACATGTTTTCCAATTCACTGCTGAGAACTGGATTCTTTTTATGCAAGCGGGACTACGGAGGAATAAAATGCCTCACGTCGGTATTCTGCACTCGGACGACTAGTACGCTAATAGGTGGCGAGAAACAAAAAACCATGGACGACTTGCACGGTCCTAGCTTTCTGACATCCTTATACTGGCTCTTCGGGAAAGGTTATTTTCAAACGACACATCAACTGCAGATAGAGCACAGCAAAATCTACGGCCCCCTTTGGAAGTCCAAATACGGACCGCTGGTTGTTGTCAATGTGGCCAATGCAGACCTCATAGAACAGGTTTTACGGCAAGAGGGTCGCCACCCCATTCGTACTGACATGCCCCACTGGAGAGGATACCGAAAACTCCGCAATCATGCCTATGGACCCCTCACGGAAATGGGAGCGGAGTGGCAGCGCATTAGAAGCATCCTGAATCCCCGCATGCTGAAGCCCAAACATGTGTCCAACTACACCAATGCTATTAATGGTGTGGTGAGCGACTTTATTGGGAAGGTGGCTAAGCTTAGGACAGCAAAAGGCAATGACCTTATGGTGTATGATGTGGCAGGAGAACTGTACAAGTTTGCCTTTGAAGGAATATGCTCAGTGTTGTTTGAAACTCGCATGGGGTGTCTGAATGATGTGGTTcctgaagaaacacagaagtTTATCTTCTCTGTTGGGGAAATGTTCCGTCTTTCTCCCATTGTGATCCTGTTCCCCAAATCTCTCTGGCCCTACATGCCTTTTTGGAAGCATTTTGTGGCTGTTTGGGACCATCTGTTCAAAGTTGcggATGAACTAGTGCGGAAGAAGATGGCAGAGATTCAGGAAAGGGTGAAACATGGGCAGCCAGTGGAGGGCGAGTATCTCACGCACCTCCTGATCAGTGAACAGATGTCCTTCACTGAGGTTTTGGGAAGCATTACAGAGCTTCTGCTGGCAGGAGTCGACACCACATCAAACACTATTTCCTGGGCTCTTTATCACTTGGCACGGGAGCCAGAGATCCAGCAGAAGCTGTATGAGGAGGTTATCAGTGTCTGCCCAGATGACAAAGTGCCCTGTAGCGAAGACATCACCAGGATGCCACTGCTAAAGGCCGTTGTTAGAGAGACTCTTCGATTGTATCCCGTGGTTCCTGGGAATGCTCGCGTCGTTGCTGAAAGAGAAATAGTGGTGGGCGGCCACCTCTTCCCTAAAAATACACTTTTCCACCTCTGCCACTTTGCAGTGTCCTACGATGAGAAGGTGTTTCCCAATCCCTTTGCCTTCCTCCCTCAGCGCTGGATCCGGGAAGAGAAGCAGTTAAACCAGCATCCCTTCGGGTCTGTGCCGTTTGGCTTTGGCATCCGTGCGTGCCTGGGCCGCAGAGTGGCTGAACTGGAGATGTACCTCCTCTTGTCCCggTTAATAAAACACTATGAAGTGCGTGCAGACTCTTCAGGAAGGACCGTGAAGCCGATCACGCGAACTCTGCTGGTCCCTGCCACGTCTATTGACCTGCGGTTTCTTGATAGGCAAAAAGGGCCAGAGGAGCCACTTAAAGCAAATGCTTCTGTATAAATAACTGTGCACTTCTCAAAGCAGTTTGCTTCTATATAATGCTGTTTACATATTTGATATGACTTACATAGCTgaaaaattcactaaaatgcGTAGCCCTATGGACAAAGTGCTTACTAATTTACACTGCTtgacataaaaaagcatttttatttataataactcttattttactgttatagATGCCTATTATACAGTGTACTGTAAATGTactaattgtaaaaatatttttatgtaaattgcatgtgaatgaatgtaattgtaattaatgaATTCATGTTAGTATCATATGTAagaaagttaaaattaaatttgtcaGTGAATATGCatgatttttaatgcaatgttttcCTTGTTTTTATCCCAacgtataaaataaatgaataaaataattttttaagcatacaata

Function

symbol description
si:dkey-91i10.3 Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Human ortholog(s) of this gene implicated in cerebrotendinous xanthomatosis. Orthologous to human CYP27A1 (cytochrome P450 family 27 subfamily A member 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17960 CYP49A; cytochrome P450 family 49 subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248469.1 True 2666 mRNA 0.43 9 13777626 13783452

Neighbor

gene id symbol gene type direction distance location
mmadhcb LOC107555358,LOC107723693,LOC107725215,LOC107555052,LOC107658219 coding downstream 12300 13760324 ~ 13765326 (-)
LOC122351432 LOC107723646,LOC107684057,LOC107555330,LOC107577428 coding downstream 83439 13684985 ~ 13694187 (-)
cntnap5a cntnap5a,LOC107723682,LOC107567780,LOC107684760,LOC107658203,LOC107725209,LOC108425961 coding downstream 202672 13515688 ~ 13574954 (-)
LOC122351673 tas2r60,LOC107686069,LOC107567768,LOC107658204,LOC107555019,LOC107723647 coding downstream 262142 13513602 ~ 13515484 (-)
faima faima,faim,LOC107723686,LOC107686598,LOC107725233,LOC107695570,LOC108266416 coding downstream 322776 13449870 ~ 13454850 (-)
eaf2 eaf2,LOC107683512,LOC107725251,LOC107723678,LOC107658291,LOC108261038 coding upstream 333 13783785 ~ 13787128 (-)
tsn tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218,LOC107725218 coding upstream 37947 13821399 ~ 13823785 (-)
tnfaip6 tnfaip6,LOC107723653,LOC107658287,LOC107677671,LOC107555349,LOC107725226 coding upstream 130422 13913874 ~ 13921597 (-)
itgb5 itgb5,LOC107723672,LOC107725247,LOC107658201 coding upstream 142461 13925913 ~ 13961097 (-)
rbm44 LOC107674378,LOC107723642,LOC107555328,LOC107736749,LOC107735772 coding upstream 178305 13961757 ~ 13972062 (-)
G70033 NA non-coding downstream 95487 13679380 ~ 13682139 (-)
G70027 NA non-coding downstream 102112 13674718 ~ 13675514 (-)
G69953 NA non-coding downstream 365187 13411812 ~ 13412439 (-)
G69888 col6a3,LOC107670696,LOC107567775,LOC107739950 non-coding downstream 450213 13302403 ~ 13327413 (-)
G70263 LOC107723691,LOC107555352,LOC107725250,LOC107555050 non-coding upstream 32259 13815711 ~ 13816743 (-)
G70271 NA non-coding upstream 51794 13835246 ~ 13835699 (-)
G70272 NA non-coding upstream 53858 13837310 ~ 13837600 (-)
G70290 LOC107658288 non-coding upstream 75544 13858996 ~ 13859401 (-)
G70288 neb,LOC107658288,LOC107723644,LOC107678501 non-coding upstream 76331 13859783 ~ 13866148 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other downstream 103819 13642303 ~ 13673807 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 281959 13473135 ~ 13495667 (-)
G69757 NA other downstream 791648 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 1039455 12738044 ~ 12738171 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other downstream 1056936 12707976 ~ 12720690 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other upstream 24370 13807822 ~ 13813327 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 96118 13879570 ~ 13912943 (-)
G70294 NA other upstream 154807 13938259 ~ 13939868 (-)
G70317 NA other upstream 413027 14196479 ~ 14253776 (-)
LOC122351495 NA other upstream 576194 14359646 ~ 14372674 (-)

Expression


Co-expression Network