rnd3b (rnd3,rnd3b,LOC107725257,LOC107555359,LOC107723687,LOC107683601,LOC107658293)


Basic Information

Item Value
gene id rnd3b
gene name rnd3,rnd3b,LOC107725257,LOC107555359,LOC107723687,LOC107683601,LOC107658293
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13772236 ~ 13777201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248471.1
ATCACACAAGTATGTGGATGTTTCACAGAGTCCAGAGCGACGCTTTTACTTCTCAGAGCAGCGGACAGAGGATGCGCCTCACGCCTGCACGGAGAGCCGAGGTCCAGCTTTAAACGTAACTCGCCCTCATCACAACCCGGAGAGCGCTGACCGCGAGCTTTTTGAACAGAGAGGACCGGAGTATTTCTCTCATGCGCTAACATGGACAGTCCGCGGGCTCGAGGTCAACCGGTTGATTTTCAGCGCCAGTGAACGAAGATGAGGTTCAGTTAGTCCATGATGGATCACCATCACgatctgaaatgtaaaatagttGTGGTCGGGGACACTCAGTGTGGGAAGACGTCtttgctaaatgtttttgcCAAAGACTCCTTTCCAGAGAACTATGTTCCTACAGTGTTTGAGAACTACACAGCCAGTTTTGAGGTGGACACATTGAGAGTTGAGCTCAGTCTTTGGGATACTTCAGGGTCTCCATACTATGACAACGTGCGCCCCCTTTCTTACCCAGACGCTGATGCAGTTCTCATCTGTTTTGATATCGGTCGACCGGAGACTCTGGAGAACGTGCTAAGAAAGTGGAAGGGAGAAATCGAAGAATTCTGTCCCAATACAAAAGTACTTTTGGTGGGATGCAAGTCAGACCTGCGTGCAGACTTGGCCACATTCGTGCAGCTGTCCAATGATATTCCTTCATCGTACGACCAGGGCTCAAACATGGCCAAGCTGATCTCGGCTCCTTACATCGAGTGCTCAGCGCAGCAGTCGGAGAACAGCGTGAGGGATATTTTTCACATAGCCACACTGGCCTGCATCAGCAAAAGCAACAAGAATGTGAAGCGCATCAAGTCCGGTAGAGCCACCAAGAGGACTTCACATGTATCTAACAGACCTGCGTTGGACTCAGTGTCACGTCTGCACAAGACCAAGGCTAAAACCTGCACAGTCATGTGATTTCAGAAGCCATTTCATCTGCATGCATTCCTTCTCCTATCAGGATTCTTTCTAAAACTCCACTGAGGAATTCAGGGGACACGAACTgaaggaagatattttgcacTTCACTATATTCACAGTATGTGTGACCGAGTCAGTGAAATGTATTGATGATAATGGAGTCCGTTCTCcccatttaaaagaaaaacctcAGAATAAAACACCTAAAGCAGGGAAAATGTTCCTATGTACTGCCAAATAAGCACTTATAACTTGTAGAAGCTGTCCAAAGAAGATTTCCTGTAGATTTTCTtctgttataatattttattacaacatATCCCAGTTCATGGACGTAACTAATGTAATTAACGCATGGTCAGCGCTGCTAACCGTAGTCCTGTACAATCAGACCTGACTGCACCAAAAAGTGTCAAATAATGTAACAGATATACATTGtaggtattttttttctatgcaaGATATTAATACAAGGAAATAAATTACGCGTACCTGTTGAAAA

Function

symbol description
rnd3b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Orthologous to human RND3 (Rho family GTPase 3).
rnd3 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Located in focal adhesion.

NR:

description
PREDICTED: rho-related GTP-binding protein RhoE-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248471.1 True 1462 mRNA 0.45 5 13772236 13777201

Neighbor

gene id symbol gene type direction distance location
lypd6 lypd6,LOC107683855,LOC107725222,LOC107658220 coding upstream 15983 13736548 ~ 13756253 (+)
lypd6b lypd6b,LOC107725258,LOC107658295,LOC107683936,LOC107723697,LOC107555360 coding upstream 43418 13713771 ~ 13728818 (+)
kif5c kif5c,LOC107723658,LOC107684119,LOC107555329,LOC108425929,LOC108266089 coding upstream 58914 13695803 ~ 13713322 (+)
acmsd acmsd,LOC107723660,LOC107555338,LOC107725255,LOC107555032 coding upstream 96293 13671667 ~ 13675943 (+)
arl4cb arl4cb,arl4c,LOC107658299 coding upstream 146093 13624476 ~ 13626143 (+)
si:dkey-91i10.2 LOC107555352,LOC107723691,LOC107682829,LOC107555050,LOC107725250 coding downstream 19038 13796239 ~ 13820693 (+)
arl5a arl5a,LOC107555355 coding downstream 47217 13824418 ~ 13835079 (+)
neb neb,LOC107725229,LOC107658288,LOC107555350,LOC107678501 coding downstream 63931 13841132 ~ 13895356 (+)
crygm3 crygm3,LOC107555346,LOC107723665,LOC107705175,LOC107658283,LOC107555044,LOC107670564 coding downstream 320928 14098129 ~ 14100450 (+)
crygm5 crygm5,LOC107555331 coding downstream 324913 14102114 ~ 14102949 (+)
G70043 NA non-coding upstream 2807 13769229 ~ 13769429 (+)
G70032 NA non-coding upstream 79749 13692214 ~ 13692487 (+)
LOC122351436 LOC107555330 non-coding upstream 83203 13686665 ~ 13689033 (+)
G70029 map3k19,LOC107684057,LOC107723646,LOC107555330,LOC107725236,LOC107658294 non-coding upstream 85770 13685796 ~ 13686466 (+)
G70021 NA non-coding upstream 102792 13669106 ~ 13669444 (+)
G70045 si:dkey-91i10.3,LOC107658292,LOC107725254,LOC107555015,LOC107683415,LOC107723676,LOC107555356 non-coding downstream 431 13777632 ~ 13787121 (+)
G70064 NA non-coding downstream 154418 13931619 ~ 13939730 (+)
G70069 LOC107555327,LOC107723673,LOC107658285,LOC107673585,LOC107729410 non-coding downstream 171552 13948753 ~ 14471817 (+)
LOC122352011 NA non-coding downstream 529346 14306547 ~ 14329484 (+)
G70125 NA non-coding downstream 555099 14332300 ~ 14335751 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other upstream 87401 13676163 ~ 13684835 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 467645 13289693 ~ 13304591 (+)
G69755 NA other upstream 786258 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 968828 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 1142701 12627535 ~ 12629535 (+)
LOC122351767 NA other downstream 809881 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 1623926 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 1931000 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 1957369 15734570 ~ 15789702 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other downstream 2122226 15899427 ~ 15901720 (+)

Expression


Co-expression Network