wdr3 (wdr3,LOC107569352,LOC107712260,LOC107724477,LOC107658238,LOC107668854)


Basic Information

Item Value
gene id wdr3
gene name wdr3,LOC107569352,LOC107712260,LOC107724477,LOC107658238,LOC107668854
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14749258 ~ 14758586 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248481.1
ATCATGGCGTAAGATCGTAGTTATGCTCGGTAGTCTACCTCTTTTGTCTTGAAGCATCAAACACATGCGACTGAAAAGCATGTGGAAGTTCTCCacatccagaaaaaaaatattttcataaaggACTGCAGATACAATATACAACTAATCGACAAACCTCTGGCTTGCCATGGGTTTAACTAAGCAGTACCTGCGCTATGCAGAGAGTGCTGTATTCGGAGTGATCGGAAGCCAGAAGGCCAACATCGCATTTGTGACCCTCAGAGGAGGAGAGAAGGGTCGATATGTCGCTGTGGGAGCTTGTGAGCATGTGTTCATATGGGATGTCCGCAAAGCTGAGAAGGTTCTTATACTTGAAGGTAAAAAGCATGAGGTGACATACTTGTGCCCTTCTCCTGATGGCATTCACATAGCGGTGGGTTACGAGGATGGAGGTGTGCGCATCTTTAATCTGCTCAACGGTGAAAGCAGCGTCTCCTTCAGTGGACACAAATCGGCTGTCTCTGTTATTAGATATGATGCACTGGGTGCTCGCCTCATCACTGGCTCCAGAGACACAGACGTGATAGTGTGGGATATCATCAATGAGTGTGGTCTGTACAGACTCAAAGGACACAAAGATGCAATCACACAAATTTTGTTGTTGGAGAACAAAAACCTGCTAATTACAAGTTCCAAGGACAGTTTTGTAAAGTGGTGGGACTTGGACACACAGCATTGTTTCAAGACCATGGTGGGGCATCGTACTGAGGTATGGGGGATGGTCCTGTTGAACCAGGAGAGTAGGCTGCTTACAGGATCCGCTGACAGTGAGCTCAGAGCCTGGGACATTCAGTACATTGAGGACGGTAAAGATGTGGGGGAGCCACAGGTAAAGAAAGTCAGAACTCTTCTtgaggaagatgaggaagaaCCTGACGAAGAGCCAGAAGAACGAATTCTCAGCTGCAAGAAAGCTGGTTCGCTTTTGAGGGAATCCAGAGACAGGGTGTTATCCTTGGTCACAGATGCAAAAGCTAATGTGCTAGCATGCCATGGTCTGGAAACTATGCTTGAAGTCTTTACTGTACTATCGGAGAAGGAGGTCGAGAAAAAAATGGACAGAAAACTAAAGAAAGCCAAGAAAAAAGCAAAGTCTCAAGATGGAGAGGATGCACCTGAACCTGTAGTAGAGAGGAAGTTGAGTGACGAGATACAAAAGCTGGCAAACATAAAGGCATCATCCAAGATCAGatcGATGGACTGCTTTCTGGTTCCTAATGGAGAGATGAAGTTTGCTCTTCTGCTGCAGAATAACACAGTGGAGACATACACCCTGAAGACTACGGAGAAGAAACCTACTGGCACTAAAACCTCTCGCCTCACACTGAGCGGTCATCGCACAGATGTCAGAACGCTGGCCTTCAGCTCAGATAACATAGCCATCCTCTCTGCCTCTAAAGAAACTGTCAAAGTGTGGAACAGGTCCACCTTGCAGGTCATTCGAACCATGGAGTGTGAATATGCTCTCTGCTCGCTCTTTGTTCCTGGAGACAGACAGATTATCTTAGGAACAAAGAATGGGAATATTCAGATTTTCGATTTGGCCTCAGGAAGCCTTCTGGAGACGACTGAGGCCCACGATGGAGCTCTTTGGTCCATGTGTCTCTCTCCAGACCAGAGAGGGATCGTAACCGGTGGTGCTGACAAGACTGTGAAATTCTGGGACTTTGAGCTCATAAAGAATCAAGACTCTGACAGAAACAAGAGACTGACGGTGAAGCACACACGCACCCTGCAGTTAGATGAGGACGTGCTGTGTGTGCGCTACAGTCCTAACCAGAGACTGCTGGCCGTCTCTCTTTTGGACTGTACGGTCAAGATCTTTTACACAGACACGCTAAAGTTCTTCCTGTCGCTGTATGGACACAAGCTGCCCGTGCTGTGCCTGGACATTTCACATGACAGCGCTTTAATAGCCACAGGCTCGGCTGACAGAAATGTGAAGATTTGGGGTTTGGACTTCGGGGACTGTCATCGCTCTATGTTTGCACACGATGACAGTGTCATGTTTCTTCAGTTTGTCCCTAAAACCCATCTGTTCTTCACTGCGGGAAAGGACAGAAAGATTAAGCAGTGGGACGCTGACAAGTTTGAGCACATCCAGATATTGGAGGGTCATCATCATGAGGTCTGGTGTCTGGCCATCAGCCCCAATGGAGACCACATCGTCTCCTCGTCTCATGACAAGTCCCTCCGGCTGTGGGAGAGAACGAGAGAGCCTATCATTCTGGAAGAGGAGAAGGAGATGGAAAGGGAAGCAGAATTCGAGGAGTCATTCGCTAAAGATGACGAACCTGTGGTCCCCGGAGAGACTAAAGGAGAGGCAGAACCTGCTGGGAAGAAGACCATTGAGACAGTGAAAGCTGCTGAGCGAATAATGGAGGCTGTTGAGCTCTATAGAGAAGAAAGTGAAAAGCTGGAGGAGCACAGTGACGCTTGCAAGGCAGCAGGGAAGGAGTTACCGCCCCCTAAGATGAACCCCATCCTAGTGGCTTTTGGAAATATCTCTCCTTCTCGATATGTTCTGGAAGTAATAAAGAAGGTTCGGTCCAGTGAGCTGGAAGTGTCTCTGCTGGTGCTGCCATTTCCTTACGTGCCGGATCTGCTGAAGCTCTTCAATGGTTACGTACAGCAGGGCCTGGAGGTGGAGCTAGTGTGCCGCTGTCTCTTCTTCATACTCAGAGTTCATTTTGGCCAGATCACCAGTAATCAAATGCTGCTGTCAGTCATTGACGAGTTAAGGACCAACACAATCTCTAAAGTGCGAGAGATCAGGGATGTCCTGGGTTTCAACAGCGCTGGTCTTCAGTTCCTGCAGCGTGAGATTGAGAGCAAAGAGGACGTAATGTTCTTTGCTGATGCCACGGATCGCtttgaagagaaaaagagaaagagaaagaaacgtGAAAGAGCCGTCCTTACAATCACATGAAACTGACGTCAACTGTTATAACAGACTCCATTGCTTTCTGCTTTTACTATCCCGAAGAAGCATCACGCTGATGTTTTTATAAGTTGATATGTCATTTGTATTTGTCTGAAGTCCATAAAGGTgaatttctccaaaaaaaaaaaagctgtttactgaa
>XM_043248482.1
GAGGACAAGAATCGTCACTTCCGGGAATGCAGTAGGGGCAGTAGCTATGTTGTCGATAGGTGCAGAGAACGCACAGACCTATAAAATATTCTACAATAGATTTTAATCGACGTTCTAGAGTCACTGTTAAATTAAACCTCTGGCTTGCCATGGGTTTAACTAAGCAGTACCTGCGCTATGCAGAGAGTGCTGTATTCGGAGTGATCGGAAGCCAGAAGGCCAACATCGCATTTGTGACCCTCAGAGGAGGAGAGAAGGGTCGATATGTCGCTGTGGGAGCTTGTGAGCATGTGTTCATATGGGATGTCCGCAAAGCTGAGAAGGTTCTTATACTTGAAGGTAAAAAGCATGAGGTGACATACTTGTGCCCTTCTCCTGATGGCATTCACATAGCGGTGGGTTACGAGGATGGAGGTGTGCGCATCTTTAATCTGCTCAACGGTGAAAGCAGCGTCTCCTTCAGTGGACACAAATCGGCTGTCTCTGTTATTAGATATGATGCACTGGGTGCTCGCCTCATCACTGGCTCCAGAGACACAGACGTGATAGTGTGGGATATCATCAATGAGTGTGGTCTGTACAGACTCAAAGGACACAAAGATGCAATCACACAAATTTTGTTGTTGGAGAACAAAAACCTGCTAATTACAAGTTCCAAGGACAGTTTTGTAAAGTGGTGGGACTTGGACACACAGCATTGTTTCAAGACCATGGTGGGGCATCGTACTGAGGTATGGGGGATGGTCCTGTTGAACCAGGAGAGTAGGCTGCTTACAGGATCCGCTGACAGTGAGCTCAGAGCCTGGGACATTCAGTACATTGAGGACGGTAAAGATGTGGGGGAGCCACAGGTAAAGAAAGTCAGAACTCTTCTtgaggaagatgaggaagaaCCTGACGAAGAGCCAGAAGAACGAATTCTCAGCTGCAAGAAAGCTGGTTCGCTTTTGAGGGAATCCAGAGACAGGGTGTTATCCTTGGTCACAGATGCAAAAGCTAATGTGCTAGCATGCCATGGTCTGGAAACTATGCTTGAAGTCTTTACTGTACTATCGGAGAAGGAGGTCGAGAAAAAAATGGACAGAAAACTAAAGAAAGCCAAGAAAAAAGCAAAGTCTCAAGATGGAGAGGATGCACCTGAACCTGTAGTAGAGAGGAAGTTGAGTGACGAGATACAAAAGCTGGCAAACATAAAGGCATCATCCAAGATCAGatcGATGGACTGCTTTCTGGTTCCTAATGGAGAGATGAAGTTTGCTCTTCTGCTGCAGAATAACACAGTGGAGACATACACCCTGAAGACTACGGAGAAGAAACCTACTGGCACTAAAACCTCTCGCCTCACACTGAGCGGTCATCGCACAGATGTCAGAACGCTGGCCTTCAGCTCAGATAACATAGCCATCCTCTCTGCCTCTAAAGAAACTGTCAAAGTGTGGAACAGGTCCACCTTGCAGGTCATTCGAACCATGGAGTGTGAATATGCTCTCTGCTCGCTCTTTGTTCCTGGAGACAGACAGATTATCTTAGGAACAAAGAATGGGAATATTCAGATTTTCGATTTGGCCTCAGGAAGCCTTCTGGAGACGACTGAGGCCCACGATGGAGCTCTTTGGTCCATGTGTCTCTCTCCAGACCAGAGAGGGATCGTAACCGGTGGTGCTGACAAGACTGTGAAATTCTGGGACTTTGAGCTCATAAAGAATCAAGACTCTGACAGAAACAAGAGACTGACGGTGAAGCACACACGCACCCTGCAGTTAGATGAGGACGTGCTGTGTGTGCGCTACAGTCCTAACCAGAGACTGCTGGCCGTCTCTCTTTTGGACTGTACGGTCAAGATCTTTTACACAGACACGCTAAAGTTCTTCCTGTCGCTGTATGGACACAAGCTGCCCGTGCTGTGCCTGGACATTTCACATGACAGCGCTTTAATAGCCACAGGCTCGGCTGACAGAAATGTGAAGATTTGGGGTTTGGACTTCGGGGACTGTCATCGCTCTATGTTTGCACACGATGACAGTGTCATGTTTCTTCAGTTTGTCCCTAAAACCCATCTGTTCTTCACTGCGGGAAAGGACAGAAAGATTAAGCAGTGGGACGCTGACAAGTTTGAGCACATCCAGATATTGGAGGGTCATCATCATGAGGTCTGGTGTCTGGCCATCAGCCCCAATGGAGACCACATCGTCTCCTCGTCTCATGACAAGTCCCTCCGGCTGTGGGAGAGAACGAGAGAGCCTATCATTCTGGAAGAGGAGAAGGAGATGGAAAGGGAAGCAGAATTCGAGGAGTCATTCGCTAAAGATGACGAACCTGTGGTCCCCGGAGAGACTAAAGGAGAGGCAGAACCTGCTGGGAAGAAGACCATTGAGACAGTGAAAGCTGCTGAGCGAATAATGGAGGCTGTTGAGCTCTATAGAGAAGAAAGTGAAAAGCTGGAGGAGCACAGTGACGCTTGCAAGGCAGCAGGGAAGGAGTTACCGCCCCCTAAGATGAACCCCATCCTAGTGGCTTTTGGAAATATCTCTCCTTCTCGATATGTTCTGGAAGTAATAAAGAAGGTTCGGTCCAGTGAGCTGGAAGTGTCTCTGCTGGTGCTGCCATTTCCTTACGTGCCGGATCTGCTGAAGCTCTTCAATGGTTACGTACAGCAGGGCCTGGAGGTGGAGCTAGTGTGCCGCTGTCTCTTCTTCATACTCAGAGTTCATTTTGGCCAGATCACCAGTAATCAAATGCTGCTGTCAGTCATTGACGAGTTAAGGACCAACACAATCTCTAAAGTGCGAGAGATCAGGGATGTCCTGGGTTTCAACAGCGCTGGTCTTCAGTTCCTGCAGCGTGAGATTGAGAGCAAAGAGGACGTAATGTTCTTTGCTGATGCCACGGATCGCtttgaagagaaaaagagaaagagaaagaaacgtGAAAGAGCCGTCCTTACAATCACATGAAACTGACGTCAACTGTTATAACAGACTCCATTGCTTTCTGCTTTTACTATCCCGAAGAAGCATCACGCTGATGTTTTTATAAGTTGATATGTCATTTGTATTTGTCTGAAGTCCATAAAGGTgaatttctccaaaaaaaaaaaagctgtttactgaa

Function

symbol description
wdr3 Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human WDR3 (WD repeat domain 3).

NR:

description
WD repeat-containing protein 3-like

GO: NA

KEGG:

id description
K14556 DIP2, UTP12, WDR3; U3 small nucleolar RNA-associated protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248481.1 True 3131 mRNA 0.47 27 14749258 14758209
XM_043248482.1 False 3111 mRNA 0.47 27 14749258 14758586

Neighbor

gene id symbol gene type direction distance location
hao2 hao2,LOC107724497,LOC107597376,LOC107658196,LOC107712250,LOC107569314,LOC107668850 coding downstream 128349 14614726 ~ 14620909 (-)
si:rp71-68n21.9 LOC107724495,LOC107569301,LOC107668845,LOC107597372,LOC107658242,LOC107712264 coding downstream 135319 14608083 ~ 14613939 (-)
hsd3b1 hsd3b1,LOC107569293,LOC107658243,LOC107712267 coding downstream 142254 14604819 ~ 14607004 (-)
pla1a LOC107724500,LOC107668900,LOC107569279,LOC107712265,LOC107597373 coding downstream 146461 14595394 ~ 14602797 (-)
hcn5 si:rp71-68n21.12,LOC107724451,LOC107712254,LOC107658208,LOC107668864,LOC107569239,LOC108270784 coding downstream 163425 14579283 ~ 14585833 (-)
tent5c fam46c,LOC107724489,LOC107668849,LOC107658236,LOC107569365,LOC107597368 coding upstream 24871 14783457 ~ 14789290 (-)
man1a2 man1a2,LOC107668846,LOC107724469,LOC107658234 coding upstream 36845 14795431 ~ 14862092 (-)
trim45 trim45,LOC107668847,LOC107569387,LOC107658235,LOC107597366 coding upstream 110173 14868759 ~ 14874692 (-)
vtcn1 vtcn1,LOC107712252 coding upstream 116906 14875492 ~ 14877656 (-)
morc3a morc3a,LOC107569945,LOC107724492 coding upstream 125525 14884111 ~ 14898125 (-)
G70396 NA non-coding downstream 153916 14594263 ~ 14595342 (-)
G70393 NA non-coding downstream 158983 14589858 ~ 14590275 (-)
G70382 NA non-coding downstream 186266 14477332 ~ 14562992 (-)
G70332 LOC107724468 non-coding downstream 501930 14244287 ~ 14247328 (-)
LOC122352120 NA non-coding downstream 560257 14173817 ~ 14189001 (-)
G70438 LOC107600383,LOC107655530,LOC107720111 non-coding upstream 158214 14916800 ~ 14918840 (-)
LOC122352110 NA non-coding upstream 178538 14937124 ~ 14942863 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding upstream 216826 14975412 ~ 14981853 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding upstream 254771 15013357 ~ 15275841 (-)
LOC122351681 dach1,LOC107668899 non-coding upstream 276233 15034819 ~ 15041730 (-)
LOC122351495 NA other downstream 376584 14359646 ~ 14372674 (-)
G70317 NA other downstream 495482 14196479 ~ 14253776 (-)
G70294 NA other downstream 809390 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 836315 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 935931 13807822 ~ 13813327 (-)
G70549 NA other upstream 544517 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 630632 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 1012835 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 1962218 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 2058554 16817140 ~ 16823775 (-)

Expression


Co-expression Network