ccnt2a (ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362)


Basic Information

Item Value
gene id ccnt2a
gene name ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13676163 ~ 13684835 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248516.1
AATACGTGACGCTCGTTCTCTGTTCGTCTGCTGGACGGTAATGGCGGCGTGCCGGGGATCATCGTCCAAATGGTTTTTTACCCGGGAACAGCTCGAAAACACCCCGTCCCGCCGCTGCGGAATGGAGCCAGACAGAGAGCTGTCTTATCGACAGCAAGCCGCGAATCTTATTCAGGACATGGGCCAGAGACTAAATGTTTCTCAACTCACAATAAATACTGCCATTGTTTACATGCACAGATTTTATATGTACCACTCTTTCACCAAATTCCACAGAAATaccATCTCCCCAACAACATTATTTCTGGCTGCAAAAGTTGAAGAGCAACCACGGAAACTCGAACACGTCATTAAAGTAGCTCATGCATGTTTAAACCCCCAGGAGCCTCCACTGGATACAAAGAGTAATGCATACCTCCAGCAAGCTCAAGAGCTGGTGATACTTGAAACCATAGTGCTGCAGACTTTAGGCTTTGAAATAACAATTGAACATCCACACACTGATGTAGTGAAATGTTCCCAGCTAGTGCGAGCAAGCAAGGATCTGGCACAGACTTCCTATTTCATGGCTACCAACAGTCTGCACCTCACCACCTTCTGCTTGCAGTACAAGCCCACAGTCATCGCCTGCGTCTGCATTCACCTGGCCTGCAAGTGGTCCAACTGGGAGATTCCTGTTTCTACCGATGGAAAGCACTGGTGGGAGTATGTGGACAGCTCAGTTACACTTGAACTTCTTGACGAACTCACCCACGAGTTTCTGCAAATATTAGAGAAGACACCCAGCAGGTTGAAGAGGATTCGTAACTGGCGAgCTACACAAGCTGCTAAGAAGCCCAAATCAGATGGTCAGGCCTCAGACAGCAACTCTTTAGCGGGACCTTCATTAACCCAGGACATGTCCTTGATGGATGCCCTTCCCGGGGTATCTACAAACACAGCATTCTCCAAAGCCTCAACGTCTTTCCCAGTGACCCTGCCAAGCAACTCAAGCAGCAGTCTTTCTCTTGATTCCATTGCCAACATGCAGGGAACCTCATACACTTACACCGCCCCCAGTGACTGGCCTCAGGACCAAGTGCGCTCAGACCAGTATTCTGTCAAACAGCTTCCCCCACACAGTTCTATGCACCCACACCGGCCTGACAAAAGCGCAGAGTTCAACCCTGCCAAACATGAACACAAGGCCAGCGGCGGGGCGAAGCACCAGGCCACGGCCTATCCTCCACCTGCAGCACCTACACAGAAAATGTCTCTGGACAAGTACAGGGAGAAACATGCTGCTGAGCTGGCTGTGCAGAAACGCAGGCAAGAGCAGCAGATCGTGGAGACAGAGGCATATGGTGCTCAGACGGATCACCGCAAGCACCTGCCCCAGCTGTCTCATGGGCAGCAGGGAGCAGGAGCCACCACTGCCTCACCCCTGAAGATGAAGCTGCCCGTCTCTGGGCAGGACAAGCTCCAGGACAAACGTGACAAAGGGAGTTCTATAAAACTGCGTCTTCCGGTCCCCTCACAGAGCGAGAAGGGGGGATCAAGTAAGGAggagctaaaaatgaaaataaaggtcTCCTCTGAGCGGCATAGCTCCTCTGACGAGGGTGCTGCAAAGAGCAAACATTCCAGCCCGCTTGTGAGCAAGGAGAAACACAGAGACCACTCAGCCCATCGTCACCATCATAAACATGGCCACTCACACACGCATAGTGGCAACGGCAGGAGCAGCCTTGAGGCGCCTGCATCTGGTTCGGCCCTCCGGAGCCCAATAGGTTCTGGTGGGGATGGCACAAGCTCAGCTTCCAGTTCTTCACGCAAGAGGGTGAACCCCGAAGCCAGCCACAATCACCACTCCAAAAAGAACAAGAGCTCCAAAGGCGGTGCAGGTGGGCTACGGACATCTCAGCACCCTAGTGAAACTGGACAGGAAACCAGTGGAGAGCCATGGCCTTGAGGGCGCCGGCCTAGCTAATGGCCAACACACAGACTACAAACATAATTTTGACATGCTTGAGTCACTGTTAAGTGCCCAAGGAATGGACTAATGAACTGATAGGAAAGaggataaaatataaaagaaaatcaagcATAGATTTCATTATTAGAAAGAGGGGAGAATAACAGGAATGTGAAGAgtaagagaaagaaataaaaatgcttcCCGATCTTCTGGCAGTTCGGTTCAGTCTCGCCATCTCTGTATAACTGCTGCTTTCCTCAGTATTCCCTCATGAGCAGTCTGTATGAATGCGTGAGCCAGTATATGAATGTCAGGGCCATTATAGTGTAAAGATGTTTTCATGATAAAAGTGTAATGAGTGAAAGTTTTTGACGCAAGAAAATTTATAAGACTGAAATCACCCTCTAAAATGACTGACGCTCCTCTCATTTGTTAAACAACGTTTGTAGAAGGAATGCAGAATCCAGATTTAAGTTCCATAGATTCTTGAATGTTTCTTTGTTTCCTTTCCCTTCATCTGATACCTTCTATGTGAACTGCATGTTAATAATGAAAGGGACGAGATAGTTGTTTACAGATTGTGAAGAAAAATTTACATACATTCTCGTATGTTAAAAGCTGTACCATAACTTCTCAGGTTTGGAGCtgcttgtaaaatatatatatatatatatatgaaatatatatgggGGTAGGGGGATTTTGTGACTCAGTGTTAGAATCTATCACATTGGCATTTCTAGCGCAGCCTTCCAGTGATGTGCTCTAAAACTGGTGTTCCATGTTGCTATCAGGAGAGGGTGAACTAGCTGGCAATCCACACCCTGCCAATTACCTGGCATGTTGTCAGGGGCCATGCAATTTGTACCTTTTCTGACCTTCAAGATGACCTTAAGCTGGATGCCAAAGGCTGTGCCTCAAAACGTATAGTTCTATGAAGTTTACATAACCTTCTCTGTGaagtgcattttatatatttcttggCTTGAAGCAGTAGCCTATTTGTGCAACTCTGTAAGTCAGTAACAAATAACCTGAAACATGCATAGGTAAAAGGAGATTGAGTTCATTATCACAGTGCTGACCCAAAGAGATCTGGGCTTTCACAGGCCCTTAACATTATTTCTGAATATGGATGAATGGTTTTGAttttttgatttagattttttagtGTGAAGATATTGGTAAATGAGGCCAGCATTGTCCAAATCATCATTTTACTTTTGATCGCTGAATTGCAGTTGGATAAGGCAAGTGCAAACcctggcacttttttttttttttttttttttggtcttttcccagttttatttagatttaataataaattccaTGGTTTCCACTACCTTAA
>XR_006251758.1
AAAATACGTGACGCTCGTTCTCTGTTCGTCTGCTGGACGGTAATGGCGGCGTGCCGGGGATCATCGTCCAAATGGTTTTTTACCCGGGAACAGCTCGAAAACACCCCGTCCCGCCGCTGCGGAATGGAGCCAGACAGAGAGCTGTCTTATCGACAGCAAGCCGCGAATCTTATTCAGGACATGGGCCAGAGACTAAATGTTTCTCAACTCACAATAAATACTGCCATTGTTTACATGCACAGATTTTATATGTACCACTCTTTCACCAAATTCCACAGAAATaccATCTCCCCAACAACATTATTTCTGGCTGCAAAAGTTGAAGAGCAACCACGGAAACTCGAACACGTCATTAAAGTAGCTCATGCATGTTTAAACCCCCAGGAGCCTCCACTGGATACAAAGAGTAATGCATACCTCCAGCAAGCTCAAGAGCTGGTGATACTTGAAACCATAGTGCTGCAGACTTTAGGCTTTGAAATAACAATTGAACATCCACACACTGATGTAGTGAAATGTTCCCAGCTAGTGCGAGCAAGCAAGGATCTGGCACAGACTTCCTATTTCATGGCTACCAACAGGTTGTTATCCAGAACCTCATTTGTTGCACTGTGACTGCACACTATAGCTTCCTTTACTGCAGGTTACCCTACCAGTGTCCAACACCCTCCTTGCACCGGTGGCTACTGGGACGCCCCCCCTCTCAAACATGCCCTCAGAGCAGGGTGGGGAGGGGGTCCGGTGGCACCGGCCCCGGTTGCAGTGCGGTGTATTGTACGGGGGATCATTGTTGGCACAGAGGGGTTGAATGCACAATGTGAAGTGTAGTGGTGCTCTTGAACCTCACGTTTGCTCGGTTACAGAAGTGCATTTGTCTAAAAAAGACACTTTGGTAGCCTGAATAGCAGCTAAAGATTACACAGATGTAAACATTACATAGAAGTCCTCACGTCTGCACCTCACCACCTTCTGCTTGCAGTACAAGCCCACAGTCATCGCCTGCGTCTGCATTCACCTGGCCTGCAAGTGGTCCAACTGGGAGATTCCTGTTTCTACCGATGGAAAGCACTGGTGGGAGTATGTGGACAG

Function

symbol description
ccnt2a Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of DNA-templated transcription, elongation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Orthologous to human CCNT2 (cyclin T2).

NR:

description
PREDICTED: cyclin-T2-like isoform X4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K15188 CCNT; cyclin T

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248516.1 True 3308 mRNA 0.46 10 13676165 13684835
XR_006251758.1 False 1089 transcript 0.49 7 13676163 13681991

Neighbor

gene id symbol gene type direction distance location
acmsd acmsd,LOC107723660,LOC107555338,LOC107725255,LOC107555032 coding upstream 220 13671667 ~ 13675943 (+)
arl4cb arl4cb,arl4c,LOC107658299 coding upstream 50020 13624476 ~ 13626143 (+)
sh3bp4 sh3bp4,LOC107684539,LOC107555364,LOC107723680,LOC107658300,LOC107555062 coding upstream 53368 13609427 ~ 13622795 (+)
ndufa10 ndufa10,LOC107684997,LOC107567779 coding upstream 215709 13456115 ~ 13460454 (+)
parp9 NA coding upstream 226564 13444255 ~ 13449599 (+)
kif5c kif5c,LOC107723658,LOC107684119,LOC107555329,LOC108425929,LOC108266089 coding downstream 10968 13695803 ~ 13713322 (+)
lypd6b lypd6b,LOC107725258,LOC107658295,LOC107683936,LOC107723697,LOC107555360 coding downstream 28936 13713771 ~ 13728818 (+)
lypd6 lypd6,LOC107683855,LOC107725222,LOC107658220 coding downstream 51713 13736548 ~ 13756253 (+)
rnd3b rnd3,rnd3b,LOC107725257,LOC107555359,LOC107723687,LOC107683601,LOC107658293 coding downstream 87401 13772236 ~ 13777201 (+)
si:dkey-91i10.2 LOC107555352,LOC107723691,LOC107682829,LOC107555050,LOC107725250 coding downstream 111404 13796239 ~ 13820693 (+)
G70021 NA non-coding upstream 6719 13669106 ~ 13669444 (+)
G69985 NA non-coding upstream 157926 13515689 ~ 13518237 (+)
G69796 stk17b non-coding upstream 542324 13130098 ~ 13133839 (+)
G69789 NA non-coding upstream 568331 13107595 ~ 13107832 (+)
G69783 NA non-coding upstream 569406 13106280 ~ 13106757 (+)
G70029 map3k19,LOC107684057,LOC107723646,LOC107555330,LOC107725236,LOC107658294 non-coding downstream 961 13685796 ~ 13686466 (+)
LOC122351436 LOC107555330 non-coding downstream 1830 13686665 ~ 13689033 (+)
G70032 NA non-coding downstream 7379 13692214 ~ 13692487 (+)
G70043 NA non-coding downstream 84394 13769229 ~ 13769429 (+)
G70045 si:dkey-91i10.3,LOC107658292,LOC107725254,LOC107555015,LOC107683415,LOC107723676,LOC107555356 non-coding downstream 92797 13777632 ~ 13787121 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 371572 13289693 ~ 13304591 (+)
G69755 NA other upstream 690185 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 872755 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 1046628 12627535 ~ 12629535 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 1223798 12434988 ~ 12452365 (+)
LOC122351767 NA other downstream 902247 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 1716292 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 2023366 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 2049735 15734570 ~ 15789702 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other downstream 2214592 15899427 ~ 15901720 (+)

Expression


Co-expression Network