LOC122351440 (ino80d,LOC107747229,LOC107752578,LOC107670308,LOC107561721)


Basic Information

Item Value
gene id LOC122351440
gene name ino80d,LOC107747229,LOC107752578,LOC107670308,LOC107561721
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4840938 ~ 4853139 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248519.1
CATGTCCCCTCAGTGCCGGTAGTGGTGCTGTGAGTCCGCCGAGCTCTGAACTCTAAACCCCCGCAGATCTGTTCAATGAGAGCAGACGATAACATAATATAGAAAGTACATTAGTGATCGCTTTAACGGTTCACCGCCTCAACGGGAAATAATATTCCGTAACATAAGGAATTCCGATGAATATTCGGTGCAGTTGATGATCTGTGGCGTTTATACAGTCTGTCCGGAGTGAGACCCCGTAGAGGCTGAACCCACTGCAGCTGATGTTCTCAGGGACCAGAGTCACGTGATGTACGAAGGTAAACACATCCATTTCTCAGAGGTGGATAATAAGCCGCTGTGCTCCTACAGCCCCAAACTCTGCAAGCAGCGCAGGTTGAACGGGTACGCCTTCTGCATACGGCATGTTCTGGAGGACAAAACCGCTCCGTTTAAACAGTGCGAATATGTGGCCAAGTATAACAGTCAGCGATGCACCAACCCAATCCCCAAAGCAGAAGAGCGAAGATACTGTAACAGCCACCTGCAGGTGCTTGGCTTCATCCCGAAGAAGGAGCGTAAGAAGAAGCAGGATGCTCTGGAGGAGGTTCGTGCCCGTGCTCACGTGGAGTCTGTGGCTCTGAACATCACCGTTCCCTCTCTGGCTCTGAGAGACACTAATGGGCTGGATGGCCTCCCTCCGTCTCCGCCCTGCTCCCGTCTGACTCCGATGCCCCTCTCGGACTCCGACCTCCTCGACCCCTTTGCCTTCTATGAGGAGGACACGGACGGAGAGGAAAGCGTGGTGCAGAAGAGCTCCAGCAAGAGGAAGCTGCCCAACAGGCCCGTGATTGGCCTGAGGGTTACCGCCCGGGACCCAGAGCACCGTCAGCCGGACATCGAGCACTTTAGCGCCGTCACTGAACCCTGCACACTTCCAACCTCCCCACACTTACCACAACCCCCTCCGCCACCggctccgcctccgcctcagcCCTCGGCGAGGCTTGTCCAGCCCCCTAAACATACAGATCGGCCCGCTTACGCCCAACACGGGACAGTGCAGACACTGCTATGCAAGCCAGCTCCATCTCAGACTGGGTCTTCTGGTTTATCTGGTCTTCTCCCATCGGCTGGGGTTCAGAACCAGCCTGTTAGCCGGAGACCTGTCCCTGCTGCGTCCCCTCGCCCAGCTGCTGCCCAGGACTGCCCACCGCCCTGCGCCGTGGCCATGCGCCCCACTGCCTTCACTGCACCCCCTGTCTGCCTGCTCAGACTACAGCACCTTGTGCAGCTCTACgctcagagacagagagaacatGGAGACCTGTTCCCACATCTTGGGCTAGACTGGTCTGAAGACAGTACAGATGATGAAGATTCAGAGGAGCTTGTCCCTCTAATGCCTCAGGCCTGGAGACGTCAGGAAAGAAGCTCCCATCAAAGCACCTCCAATGAAAAGCCGCTTTCCCGGCGGGCACGTCTGGCACAGTTATGTACATACCTGCAGGAGAGGTATAAACACCTGTGCCGGCAAGACAGGGCCACCACCCGTCACAGCAGATACCGATACGCCTTCCGGAAAGCTCTTCTCCATGCTGCAAGCAAAGACCCCGACTGCACTGCACAGCTCATTCAGAAACTCAGCAAGAGCTCACAGACCTCGACCTGCTCAAGGTCTCCGGTACCACATGAAAGGACAACGTGTACGGGAACCTCAAAGGGTCATAGCTGCAGCAACATAGCTTTGCCATTTTCACGTCACTGTTTTCAACATATCCTGTTGAATCGCTCTCAGCAGCTGTTCTCCAGTTGCACGGCACGGTTCGCTGATGGACAGCAGTGCTCCATTCCTGTGTTTGACATCACTCACCAGACACCTCTTTGTGACGAACATGCCAAGAAAATGGATAACTTCCTGCGTGGGGATGGCAACAGACGCAGTCAACAGCAGCAGCTTCGGCGCCCACGTAAGAAGACCAAGCCGCCTGCACTGACgaagaaacacaaaaagaaaagacgGCGAGGTCCGCGCAGACCTCAGAAGCCCATTCCTCCCGCCGTGCCACAGGGCAACTTGCTAATGCCCTCCCTCTCCCTGTCCACTCACCACACTCATGTCAGGAGTCCGTCGACCCCTGAACTCAGTGCAGACGAGCTTCCTGACGACATCACAAACGAAATGCCTGACATTCCCAATGATCTTGAGCTGAATCAGGAAGATTTCTCTGATGTGCTGCCCCGACTCCCAGATGATCTTCAGGATTTCGACCTTTTTGAGGGTAAGAATGGAGAGTTGTTGCCCACCACAGAGGAGGCTGAGGAGCTGGTCAGAGCCCTGCAGGCCATGGGGTCGTATCCTGACTCCCTGGTGTGTTTGTCCTCAATGGGCGAACTGACCCCAGCGGATGGAGTAGACCACCGAACCATGGCTGTGTTCTCTGGGTCAGGGGTCGCAACGACAGGCATCGGAGACCTTCTAAACGGCCGAATAGCTTCTGAGACATTTCCCAATCTAGAGCTGGAGGGTAACCTCCTCCACGCCCCGACAGACCATCATTTCCCAACGTCCCCTTCACCACAGCCAACCCAGAGCAGCGCCACCGCACCCTCCACAAACCACAGCGGTGGGTTAACAGAACGAACGTTTCCCCGAGCTCCCAAACCGGACTCGTCCCCGCCAGGTAGTCATTACAGCAGCGAGCATGTGCCATCGCCCTACAGGGATCACATCTCACCCCCACATGGTGCCTCTTTTCAAACCGACCCGCCTCTCTTGCTGGAGGTGCCTTTGAGTGGAGCTCCCGGGCCTCCGCGCACCTCCTGGAACAACCTCCCGCTTTCACTCACGGACCCGGCACAGTTCGGTAACCTCCTCACTGCTGAAACTCACCTGCTCTCCACCGCACTGTCCACCCCGCCCTCCACGTCCCACTCCACTATCCTGCAGCCCACCGCTGCTCTCTCCGCTCTACCCCAATCGGGCCTGACTAGCCTCACCTCACCCTCCTCCTCGCCCTCTTCACGGGACCTTCTCACCCCCACCTTACCTAAACTACAGCTCCCACAGTTTAGTGCAGCCTTTGGCCACCAACTGGCTTCCCATAGTGGGATCCCCAAAGACCTGCAGCCCAGCCATAGCTCGACAGCGCCACCTACAGGCTTTACCATCACTAGTGCCACTGCTGCAACTCCCCCGTTCCCGCAGAGCAACTGAGTCTGGTTAGAGagacttaaagggttagttcactcaaaaattaaaactgtcaTCTTTTACTCAGCCTCCTTGGAACAAGAAGGTAGAGGTTTTGAACAATGTTCGCTTCCTGCTCTTTAAACAGAATTAAGTAATGAACAAGGGCTGTCAAACTCCAAAATGGCGTTCTAAATTTCTACACTTTTAAACTGGTGTATAACAATTGGTTATGACGTGTGATGACCAGGATTGTTTAGTAATGTCTTTGCATGACATTTTGGCCTGTTCACAAAAAGACACGAACCATTGGCTGTTAAATAATCGATTACTTTTATTGATATAACGCTTTTAACAAAACCGAtacaaagcactgaacagtatcggTATTAATGCATTCGTTCACAAAGACACAAATATTTGCACACTGTCAGTGCTGATTTGGCACAGTGCAAAGAAAACTGGACTTCTGATTGCAAAAGGTCGTTATGCAAAACTTTAATGAACAGACTATTTTTGCATTAGTTGAAGAGCAGAGGAAAAATCctgaattttttaaattcaaaattgtGAAGACTTAGTACACAAatcatgaatcattttttaTGGAGCTTTTATgtccattcattttaattgcacaaaGAGCAGTCTGAACATTCTTAtcaacatctccttttgtgttctttaGAAGAAAGTATGGCTTTAAGGGTTTctcttttgggtgaactaactctTGAATTTCCATCGCCAGCAGCAGTTTTTAGTCTATCTGTACACGTATCTCTTATTGTTACTGTTGTGATCCAAAAGTTATGTTCTACACTCATATGCCCCTTTTCCACTAAATGGTGCTAGTGCAGGAGCCAGTGATCTGCAGAGCTGTTTCAGAGCCGAATCATATTTCTTGTGAGCCAAACGATGATCTGACATTACTACATGTACCTAATAATGCGCGTTACACTCTTAGTGTATTCCAGGTTTTGAGaacttttttattgaattattattatgaagaaCAATCATGATTCACGCATatgatatttgtaaataaatcattgtttcagacagacagagacaataACGTTGCAGGAGAAGTTGTGCAGCATGATGACAAATAGAAATGTCGTTTGAGGTTGTGTgcaacttaatatttttacattataaaggacttttaacatccattttttttaaagtggaaaTGTGCAAAATGGTGCCAGGCACCAGCACTGTGTCAGTGGAAAAGGGTTGATGGTCTTGTATTTAGGCCAGTGGATCATATTCTTGTCACATTACTTATTCCATTAGTATAATGTTCTTCATACAAGAGTAGCAGGATGTTGTTTGGCTTGTGTCCTGTAGAGTCCTTGTGAGTGGAATGTTCTTGTGTTTGTTGGCTGGAGAAAGAGCAGAGCAGgactctctttttttatacttGGTATTCGGATCAGTTTCGGGTTAATCTGATCACAAGGAATTATCATTTACGCATTGTCTTAATGTGCATTTCCTTCGATCTTATGATTAATATGAGTTCATTAGTGTGTCATCAGTGGGTCACTGCATGTCCATGAAGAATTGGACACACTCATGCCCTCATATTTGTATTCAAGAGAAAGTTGATATGAGAAATTTACAATTCTTTAGAAATTTActtgtgctgtatttttgagcaaGCTGTCACTTAGCAAATCCAATCAGTTCCTGATTGGCAAAATAAAGTCCCGTTCTACATTTCTTCTCATTGGACAAGCAGTCGGTCTGACATGCATTGCAATAGAGAAGAAAATCTGGATGCAATGAGGTCAACTTTATAGCTGTACATGGCTTGCAAACTTGCAGCACAAGTATTAAATGAGAACGCGGTCCGGGATGCATTAGTATAATGTGAAGTGGCATCTCGGAAAGTGCGATTAGATCACCAAAGACGCATACcaagtataaaaacaaatgtcaaCACTGAACTTTCAGCCAGTAGCCCAGAATGAACTCCGGGCACAGCCAACAACACTCGTGTCATCCAGCAGTCTTTGTATCAGGACCGGTCTATACTTAAATGTGGTCTTACGAGAATCCACCATACGACTTGTAATCAGGACACAAATCTGTATGACTGGACAGTATGATTCATTGATGGGTCTTTGCACATGCTCAGTGGACCAGGCCTGGACCGCTCACATCGAAAGGTTAATTAAAGCAATAATCTCCTCAGCAGAGTCTCTCGTACCAGTCTTCAGTCGGGGCTCGGTGACAAACAGCTGGATCTCATTCTCCTTAAACGGTTTTTCATTTATGGCTTAACTGTTTGATTGACGGCAAATATCTCGACTTTGCTAATCTCGTAGAAACACTGACACGGAACTCTTTCAGAGAAGAGTAAGCTGAACAATGACACTTATTTTGCCAAATACATGGgttcaaatgtttgttcttCTTCATGGTGCTTAATCAGTTCAGGACCTCGTTCggtctttttttaatacaagaGCCCTTGGTGGCAAGGTTTCTGAGTACAGTAGAGCTGGCAAATGGAAGGAATGGGAGGCGGGAAAGTTGATGTCAACTGAAATAACCCCTGCGTTCGTTTTGTGGACATTTGGTGCAATTTCTATGGAGAATGGTTTGTGCAACCTGATGGTTCTTCTCCAGACTTCCACAGAAGTGTCAGGTTCAAACTCAGCCATTTTTAGTCACCGTCAGTCAGCCTTATGCCACGTGGGACCAATGTTCCCTGCAGATTTCGCTTTCTCTTTTGAAGTTAAGACAGTACAACCAAGGTTTTTGGTAGATTTTAGACACTGAACGATTATcttatatattaagtattaaatatatttatagaatagaATCCTCTAGATTGGGTTTTATTGGTTGAATTGAGTGGCGAAAggtaaataatgaaattttaaagaaacatactTGGTGGAACCGAAGCATTTAGTGGCataatgtttaattatgttGTTTAATGGCTATCAAAATTctcgtgattaatcatttttttattgattgatgtTGTGTATCTGTGTCATTTCTTTGGACGAAGAGACTGTGATCATGTGCAACAGTATTTTTGatagctattaaaaaaaaataagagtcAGTGATCGCTGAAATCCACAGGCCCTTGTGCACATTTACTCTAATCCAATATCACTAGTCATAATGGGTTTCATTCATGAAAAACTAAGAGAACGAAATGtgtgtaaattatatattttgaaaaaaaaaacaaacatttttacgTAAATGCTgataattaaattctaaaatccAGTGACGGTTTACGTGAGAATGATTTTAGAAAAGATTCCGTGTTTTCTTGCGTAAACTGTCGCATTGAATAGAAGAGTTATAATTTAATGGAATCGTTTGTAAAACCGTTATAGATTGACGCATTGAACTGATTTGAAACCGCTCTGATTGAATCATTCATAGAATCGTTCTCGCACAAGTCGTGACATTTGTATCGAAAGCAACGGCTTACGTAATAATGGTTTTAAGATGATTTACACGCATTCGTTCTGCTCTGTTTCATGAAAGAGATCATTTGTGTGGAGGAATGATCACGGGCATACTGAAGCCGTTACTTCGTTTGAAGTCAATCTCAAGAGTCATTAGTAGTGACAAAACATTGTTCGTTTTCTAGGTCATCACAGGTTCTAAATGACACTTCAGTCACTTGTGCAAAAGCCTgctatcgtttttttttttgtttgtttttttccaccgATGTTCATCAGTTGTggcaaaagcattttttttgttcctctAATGAGCTGAAATGTTGTGTGCAGTCCACGTTTTTACTGTGTTACTACTGTGTGTCCTGTGCAAACGACAGCAGGTCCGCTGCACAGAGAAACCCCCAGACAAAAGTCGCTTGCACTCTGCGTTAAGATGGCTGACTGATTCCTATACTCACTGAATGTACTGtagaactgtttttaaaaaaaaaacaaaaaaaaaaactcataggATAATCTAGTCACCTTTTGTTATTGGTCTTTAATTTGTCTAaggtatttttttgtatacaaaggtttacatttttatgtatatttttctcgtgtaaaaaattatgtaatatgtGTATAAACATTGTATGTAATATCTGTATATAGAGTGACAAATTTTGATCTTGTTTTTGGATGTAAGAATTAAAATTGTGTGAATTTG

Function

symbol description
ino80d Predicted to be involved in DNA recombination and DNA repair. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: INO80 complex subunit D-like isoform X2

GO: NA

KEGG:

id description
K11668 INO80D; INO80 complex subunit D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248519.1 True 7348 mRNA 0.45 10 4840938 4853139

Neighbor

gene id symbol gene type direction distance location
cmklr2 LOC107752611,LOC107670314,LOC107560810,LOC107689523,LOC107747228,LOC107670312,LOC107561727 coding upstream 11072 4825378 ~ 4829866 (+)
osbpl6 osbpl6,LOC107670309 coding upstream 68724 4720555 ~ 4772214 (+)
si:ch211-222f23.6 LOC107657380,LOC107716910,LOC107571834 coding upstream 134801 4702686 ~ 4706137 (+)
agps agps,LOC107725825,LOC107657345,LOC107671268,LOC107716908 coding upstream 229960 4576182 ~ 4610978 (+)
hnrnpa3 hnrnpa3,LOC107657386,LOC107600707 coding upstream 285189 4547501 ~ 4555749 (+)
LOC122351196 sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516 coding downstream 139174 4992313 ~ 5006796 (+)
LOC122351173 LOC107670300,LOC107720934,LOC107576887,LOC107549889 coding downstream 205424 5058563 ~ 5059629 (+)
c1ql2 c1ql2,LOC107670317,LOC107689526,LOC107549752,LOC107752616,LOC104939125 coding downstream 213684 5066823 ~ 5069325 (+)
marco NA coding downstream 241103 5094242 ~ 5099376 (+)
en1a LOC107670337,LOC107720935 coding downstream 252711 5105850 ~ 5108390 (+)
G67782 NA non-coding upstream 17162 4823426 ~ 4823776 (+)
G67769 NA non-coding upstream 60403 4778357 ~ 4780535 (+)
G67752 LOC107600734,LOC107683095 non-coding upstream 155757 4677450 ~ 4685181 (+)
LOC122351246 NA non-coding upstream 265413 4572574 ~ 4575525 (+)
G67684 NA non-coding upstream 484125 4355005 ~ 4356813 (+)
G67812 NA non-coding downstream 17046 4870185 ~ 4870882 (+)
G67826 NA non-coding downstream 46346 4899485 ~ 4954081 (+)
G67865 NA non-coding downstream 146789 4999928 ~ 5011204 (+)
G67867 LOC107752614,LOC107689494,LOC107747239,LOC107670320,LOC107560813 non-coding downstream 153751 5006890 ~ 5011437 (+)
G67872 NA non-coding downstream 169101 5022240 ~ 5025362 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other upstream 123705 4709053 ~ 4717233 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 278336 4523286 ~ 4562602 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other upstream 427778 4409895 ~ 4413160 (+)
G67630 NA other upstream 618767 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 713925 4120527 ~ 4127013 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 162331 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 172424 5025563 ~ 5028639 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other downstream 287006 5140145 ~ 5142152 (+)
trnar-ccu_4 NA other downstream 552090 5405229 ~ 5405301 (+)
trnar-ccu_5 NA other downstream 552764 5405903 ~ 5405975 (+)

Expression


Co-expression Network