itgb5 (itgb5,LOC107723672,LOC107725247,LOC107658201)


Basic Information

Item Value
gene id itgb5
gene name itgb5,LOC107723672,LOC107725247,LOC107658201
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13925913 ~ 13961097 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248526.1
TCTAAAGTAATGTGAGGGACGCGGCAGGCTCTCAACTATTGAACTTCCACGCTGAAAACAACCGGATGATGGGTAAAACACCTCTGTTTacaaagtttaaaatgtgtttgccAGTCAAGATTTGAAACTAAGTATGGATGCAGTTAAAGGTGAATTATTGCAGTGGACCTCAGACAGAGTGCGACATTAACAATAACTTCGAATGTGGATTTCGCCTCGGATTTCTCTCATGTGTTTACCAATGCAGTCTGCACTGGACACTAACTTCAGTCATGTGTGTACCGATGTGATGTGGAGAGGATGGACACAAAGAAGATCTCCGTCACTCACGATATAAAAAACGGACATTCGTAACAGAAACCTTTTTGTACATTTgggacaacaacaaaaaaaactcttgaCTTTGAACGGGCTTTCGATTTTGTGAGGAATAATGTGGAAACGCTGCCCATTTACGCGTCGCCCGGCTCTACTAGTTTACATAGTCTTGGAAATATTTATTCACGACGTCAAAGGTCTTAATGTTTGCTTGAGCGGCAGCGCCACATCTTGTGAAGAATGTCTCCTCATTCACCCAAGCTGCGCCTGGTGCGCGCAAGAGGACTTTGGGCAGGCTAGAACTCTCAACTCAAGATGCGACTTTAGCCAGAACTTACAGAAAAGAGGATGTGATACTCCTTTCATCGAAAACCCCAAGAGTGGCAGCTCTCTGTTGCGAAGCAGGCCTCTGAGCTCCAAAGGTTCTGGGGTGACCCAGTATGATGTTATCCAGATATACCCACAGAAGATCTCCCTCAGCTTAAGGCCGGGTGACCAGACCTCATTTGAGGTACAAGTACGTCCTGTAGAAGACTACCCTGTAGATTTGTACTACCTGATGGACCTCTCGCTCTCCATGAAGGATGATCTGGACACAATCCGCAACCTAGGCACCAAACTGGCTGAGGAAATGAGGAAGCTTACGAGTAACTTCCGCCTTGGCTTCGGCTCTTTTGTGGATAAGAACATTTCACCCTTCTCCTACACAGCCCCCAAGTACCAGGACAATCCGTGCAATGGATATAAGTTGTTTCCGAACTGCGTCCCTACGTTTGGTTTCCGCCACATCTTATCTCTTACGGACAAGGTTGACCGTTTCAATGAAGAAGTGCAGAAGCAGATGGTTTCGCGGAACAGGGACGCACCGGAGGGGGGGTTTGATGCCATTCTGCAGGCTGCAGTTTGCAAGGAGAAGATTGGCTGGAGGAAGGAGGCCTATCATCTCTTGGTGTTTGCCACCGATGACGTCCCTCACTTGGCTTTAGACGGCAAGCTCGGTGGACTAGTGCATCCTCATGATGGACAGTGTCACCTGAACGACAAGAACGAGTACAGTGCTGCTAACAAGATGGATTACCCTTCACTTGCTCTACTTGGAGAGAAACTGGCTGAAAACAATGTATTCCTCATCTTTGCAGTGACCAAAAGACACTATGTTCTTTACAAGaaTCTCACAGCATTGATACCTGGGACGACAGTGGAAATTTTGGACCAAGACTCCAAAAACATAATTCAGCTAATTGTGAACGCATACAATaacaTCAGGTCAAAGGTTGAGCTGAGTGTATGGGACCATCCTGAAGATCTCAGTCTGGCCTTCACCGCCACCTGCCAAGACGGCCAGCCCCTGACCGGCCTCCGCAAGTGTGCTGACCTCAAAATTGGTGACACTGTCTCTTTCAACATAACTGTAGACGCTCGGGGATGTCCTCCGAAAGGCACCAGAAAGAGCTTCACCATCAGGCCTGTTGGTTTTAAAGACCGTCTGGAGGTCTCTGTGGACTACCGCTGTGATTGCAGCTGCACATATTACACCAAGATCAACAGCAGCCGCTGCAACTCCGCTGGAACCTACAGCTGCGGGATGTGCCACTGTGAGCCTGGCTACCTGGGGGCCCGCTGCGAGTGTGAGGAGGGTGAGGTCGACCACCAGCACCTCAGTGCCTGCCGAGAGGCAGAGGGCAAGCAGGTCTGCAGCGGCCGTGGAGAATGCAGCTGTAACCAATGCCTCTGCTACGAATCCGAGTTTGGCAAAATCTACGGCACCTTCTGCGAGTGTGACGACTTCTCCTGTGCCCGACACAAGGGTATACTGTGCTCAGGCCATGGTGAATGCCACTGCGGTGAGTGTAAATGCCACGCTGGTTATATTGGAGACAACTGTAATTGCTCTACAGAGACGGCTTCCTGTGTGTCGGACGACGGCAAGATGTGTAGCGGGCGGGGCGGCTGTGTGTGTGGGCGGTGCCAGTGCGCTGAGCCGGGGGCATTCGGGGACACGTGCGAAAAATGTCCCACCTGTCCAGATGCTTGTGGAACAAAGAGGGAATGCATCGAGTGCCGTCTCTTTAACACGGGGAGACTGGCCGATAACCAGACCTGCCAGCGCATGTGCAAGGATGAGATCATCACCGTGGAAACGCTCAAAACTGATGATTCCAACACTGTTCAGTGCGTGTATAAGACCGAGAATGACTGTGTGATGAAGTTCACCTACTCTGAACATGCCAACGGCCAGTCGGTCCTCACCGCTCTTAAAGAGCCAGAATGTGCTGTTGCCCCAAATGCCATGACGGTGCTCTTGGCGGTTGTTGGTAGCATCTTATTGATGGGCATCGTGCTGCTAGCCCTCTGGAAGCTGGTCATCACCATCCACGACCGCCGCGAGTTTGCACGCTTCCAGAGTGCACGTTCACGGGCGCGATACGAGATGGCTTCTAATCCTGTTTATAAGCAGTCCGTTCCCTCTCACCCGGTGGAGACAGTTTTCCATATGCATGGTATCAAGTCATGCAACGGAGGAGTCCACTGATGGACCTGCACTTGGATTGGGGGACATGGCAGGACCTGTCCAGCGCATCTCTGCACTACAGTGGAGGACAGACAGAGCAAACCTTATGGTCTTTTGcaatataaacactttttttgagaTGTGTGCTTCCTGAGGATTGGAACTGATCTTTATGCGGTTTCAGTTTGATGAGCAGCAGTTGGACACATGCCGAATTTGAGAAAAGGTTTGGCTTGACTCATTGGAGAAGCGGGGCTCACCGGCCTTTTCCAGAATTCTCCATCAGCAATAGACATTGACCTGCGGTGGACTGCTTGCTTGAATATAATTCCTAATTTTCTCCAGTTCTAACCATACCTCCTGCACATTATGATgagtttgctttgctttgctttacaGGCAAAGAGACATTAagtgtatatttttaacaatgtgcCTTTCCCAGCTGTTTTACATCAGTTTATTTACCACACGTACAATGTCAGTCGCCATAAAGCGTGcacaaaaaatgctaaattatacaTCAGCTCTTTTAATGAAGTGATAGGTACTAACCTAACCagagcaatacattttttaacttgttttgcACATTGTATGTTAGATGGATTgatttataaagaaagaaatggcaCTCAATGCTAGTCTTTTGTGTATTGCCACAGGTTGCACATTTTCATAATGATCTTCAACTGTACAGTGTGATGCATTAACACTGCCTGCTGATAATTCAAGAGTGTCTTGTTTGTTCTTGGAACAATGAGGTTTTTGAAGTTCCACACCCATCCCATCAGGACCtggactaaataaaaaaattagatgCTAGACACCAACTGCAAGTAAGAACTGAGATTGACTCCACACCGATATAGTCATCCAAATCATGTTGTCAActtactatttttgttaattttggtgttttttgaggggtttttttacctgtaatgtgtacatttttgaaaactcttactgcaaaaaaactgaTCACACTGCtagtaaatatttcaaaaccagATCTCATGCTTTCAGTAGGTCTGTAGAAGTTCGGTCCAAATagatatgtaataaataaataatgagaacATTTGATTTAA

Function

symbol description
itgb5 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in margin. Orthologous to human ITGB5 (integrin subunit beta 5).

NR:

description
integrin beta-5-like

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06588 ITGB5; integrin beta 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248526.1 True 3924 mRNA 0.47 15 13925913 13961097

Neighbor

gene id symbol gene type direction distance location
tnfaip6 tnfaip6,LOC107723653,LOC107658287,LOC107677671,LOC107555349,LOC107725226 coding downstream 4316 13913874 ~ 13921597 (-)
tsn tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218,LOC107725218 coding downstream 102128 13821399 ~ 13823785 (-)
eaf2 eaf2,LOC107683512,LOC107725251,LOC107723678,LOC107658291,LOC108261038 coding downstream 138785 13783785 ~ 13787128 (-)
si:dkey-91i10.3 si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015 coding downstream 142461 13777626 ~ 13783452 (-)
mmadhcb LOC107555358,LOC107723693,LOC107725215,LOC107555052,LOC107658219 coding downstream 160587 13760324 ~ 13765326 (-)
rbm44 LOC107674378,LOC107723642,LOC107555328,LOC107736749,LOC107735772 coding upstream 660 13961757 ~ 13972062 (-)
etv5a etv5,etv5a,LOC107723673,LOC107729410,LOC107658285,LOC107673585 coding upstream 12950 13974047 ~ 13985162 (-)
LOC122351370 LOC107723674,LOC107672245,LOC107555347,LOC567728,LOC107555039,LOC107658284,LOC107729411 coding upstream 23918 13985015 ~ 14086771 (-)
crygs3 crygs3,LOC107555333,LOC107658281,LOC107705159,LOC107723661,LOC107686303 coding upstream 131830 14092927 ~ 14093892 (-)
crygs4 crygs4,LOC107723662,LOC107555042,LOC107669732,LOC107658282,LOC107705158 coding upstream 135778 14096875 ~ 14097614 (-)
G70309 NA non-coding downstream 1077 13924616 ~ 13924836 (-)
G70308 NA non-coding downstream 1809 13923749 ~ 13924104 (-)
G70306 NA non-coding downstream 47501 13878124 ~ 13878412 (-)
G70305 LOC107725229,LOC107658288 non-coding downstream 49447 13873518 ~ 13876466 (-)
G70303 NA non-coding downstream 52902 13872706 ~ 13873011 (-)
LOC122352120 NA non-coding upstream 212720 14173817 ~ 14189001 (-)
G70332 LOC107724468 non-coding upstream 283190 14244287 ~ 14247328 (-)
G70382 NA non-coding upstream 516235 14477332 ~ 14562992 (-)
G70393 NA non-coding upstream 628761 14589858 ~ 14590275 (-)
G70396 NA non-coding upstream 633166 14594263 ~ 14595342 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 12970 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 112586 13807822 ~ 13813327 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other downstream 252106 13642303 ~ 13673807 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 430246 13473135 ~ 13495667 (-)
G69757 NA other downstream 939935 12985124 ~ 12985978 (-)
G70317 NA other upstream 235382 14196479 ~ 14253776 (-)
LOC122351495 NA other upstream 398549 14359646 ~ 14372674 (-)
G70549 NA other upstream 1342006 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 1428121 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 1810324 15771421 ~ 15771864 (-)

Expression


Co-expression Network