LOC122351467 (abi2,LOC107738105,LOC107752895)


Basic Information

Item Value
gene id LOC122351467
gene name abi2,LOC107738105,LOC107752895
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6088469 ~ 6098804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248544.1
ATGCACAGGAACCGCACTTACAGCGGGAGCAGTGGCGGCAGTCATCCCAGCAGTCGCAGCAGCAGTCGTGAAAACAGCGGCAGTGGCAGTGTGGGTGTTCCCATCGCTGTGCCCACACCCTCTCCACCCAGCGCCTTCCCAGTTGCTGGTGCCAGCACACCCTCAGCTCCGACTAACTCTGCTCAGCCTTCTGTTACGTCCTCTAATTTAACCCCCACACAGCCCTCAGCCAACCCCACCTCAATCCCTGAATCTCTCCCCACTCACCCCGACTCtactgagagctctctgacctcAGATAATGGCTCTCCTCCCTCTCAACCACCCCTCGCTTCAGATGAAGCTAGTTCTACATCCAGCACCAACCCTGGGACAGGTGGTCCTCAGTTCTACAGTATGAACAGGCCCGTCCCCAGGCAGATCTCCCCCACAGTGGGGGGTTCGCTGCCTTATCGCCGAGCACCCTCGATCTCGGGTCAGACTTCCATGCCCCCCAGCCAACAGAACGGAGGACCCCATTACAATCAGAACCAAGCCTCAGTGGCCCCCCCTCCCCCCTCCGTACTGCAGATCACACCCCAGCTTCCACTGACGGGTTTTGTGGCTCGCGTACAGGAAACCATTTCAGATGCGCCTCCTCCACCTCCCCCTTCAGAAGAGCCGGTGTTTGAGGAGACACAAAACCCAGTTCCACCCCCAGAAGACTACGAGGAAGAGGAGTCTTCTGTGGTGGAGTACAGTGACCCCTATGCTGAAGAAGACCCACCCTGGGCTCCACAAACTTACGTGGAGAAAGTGGTGGCAATCTACGACTACACGCAGGACAAGGAAGATGAATTGTCTTTCCAGGAGGGAGCCATCATATACGTCATTAAAAAGAATGACGATGGCTGGTTCGAAGGTGTGATGAGCGGCACTACAGGACTCTTCCCTGGAAATTACGTGGAGTCCATCATGCACTACACGGAGTGAGAGCGTCCTCCGTCTCTCCCCCAACCCTCAACGCCCACCAGCGCTAATCTTACACTGCAGAAGAGTGCATGTGTGCATACAAACCATGCTAATAACAGGCCGTGAGACTTCAGAGATGAGAGGTGCAACTGAAGAGAGGAAGCGACTTGGAGCCGGAAGACAGAGAAAAACACTATTagagaaataaaactatattaataaaCGCCAATAATATGTTTACTGTTGAATGAAGGATACAGAGTTTTGAAGTTCGGGATAAGCTAGATTTAGTGcgagtacatttttatttttggatatttcATAACCTTTGCTCGTTCCACAGCATTGTGGTGTTTTGGAAGGCAGCGCGGGGGCTGACTGACGTCtgaaatggatttgtttttgttttttgaacgGTCTGAGGTGGATTCGGGGTGCGCTTTACAGTGAGCTCACGCTCAAAAAGGGAGTTCATTACATTTATGTTGGAGCAAGGAAAGTGTGGAACTGAACAGAAAAAGCCAATATAGAGAAGAAGCTTTCTATTTATTACATGATGTGACAGCTCAaggtttttaaatttgtttgtaaAGTGTTTTAAGTAATTGTTTGAATTATCCTCTCCCATCTAATTAAAATCAGTTTGAGCCAGATGATATAGGAAATATTTGCACAAAGGTCTCACCCTGGTTTTACTATattgattaaatgtatttaatgtttgtttttccccccTGAGAATCGGTCAGCCCCAACACAAATGCAGTAGACATATCTAATAACCTCATGAactgttttactttttgtttgttttacatttaaatattgtgtCATG

Function

symbol description
abi2 Enables several functions, including SH3 domain binding activity; identical protein binding activity; and ubiquitin protein ligase binding activity. Contributes to small GTPase binding activity. Involved in Rac protein signal transduction; positive regulation of cellular component biogenesis; and zonula adherens assembly. Acts upstream of or within peptidyl-tyrosine phosphorylation. Located in several cellular components, including filopodium tip; lamellipodium; and nucleoplasm. Part of SCAR complex. Is active in adherens junction. Colocalizes with actin filament.

NR:

description
PREDICTED: abl interactor 2 isoform X2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248544.1 True 1786 mRNA 0.48 8 6088469 6098804

Neighbor

gene id symbol gene type direction distance location
LOC122351466 LOC107670336,LOC107720941 coding downstream 1450 6069745 ~ 6087019 (-)
LOC122351270 LOC107730457,LOC107549918,LOC107670341,LOC107752618 coding downstream 109591 5975136 ~ 5978878 (-)
LOC122351906 LOC107670338,LOC107721263 coding downstream 188826 5888893 ~ 5899643 (-)
LOC122351923 LOC107549895,LOC107549742,LOC107689504,LOC107752607,LOC107720938 coding downstream 212078 5875474 ~ 5876391 (-)
LOC122351462 LOC107549895,LOC107689504,LOC107720938,LOC107752607,LOC107549742 coding downstream 213102 5874669 ~ 5875367 (-)
myo16 myo16,LOC107716764,LOC107688718 coding upstream 220286 6319090 ~ 6477546 (-)
tnfsf13b tnfsf13b,LOC107702981,LOC107688720,LOC107721586 coding upstream 388434 6487238 ~ 6492356 (-)
abhd13 abhd13,LOC107570096,LOC107702974,LOC107688719,LOC107551070 coding upstream 393805 6492609 ~ 6498204 (-)
LOC122352171 fam155a,LOC107716804,LOC107721616,LOC107570097,LOC107702989,LOC107688721,LOC101886421,LOC107735187 coding upstream 402605 6501409 ~ 6599198 (-)
LOC122351204 LOC107716777,LOC107688771,LOC100331465,LOC107602892,LOC107702999 coding upstream 587414 6686218 ~ 6708208 (-)
G68120 dip2a non-coding downstream 40873 6045115 ~ 6047596 (-)
G68082 NA non-coding downstream 282142 5805940 ~ 5806327 (-)
G68055 NA non-coding downstream 352686 5735337 ~ 5735783 (-)
G68053 NA non-coding downstream 353297 5734924 ~ 5735172 (-)
G68048 NA non-coding downstream 372832 5715341 ~ 5715637 (-)
LOC122351301 NA non-coding upstream 19047 6117851 ~ 6142682 (-)
G68189 NA non-coding upstream 142518 6241322 ~ 6241602 (-)
G68265 NA non-coding upstream 581291 6680095 ~ 6683011 (-)
G68266 NA non-coding upstream 598882 6697686 ~ 6697893 (-)
G68270 LOC107716762,LOC107688772,LOC107602882,LOC107721583 non-coding upstream 617192 6715996 ~ 6718143 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 44544 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 157333 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 688589 5396865 ~ 5399880 (-)
LOC122351925 NA other downstream 718880 5349955 ~ 5369589 (-)
G67930 LOC107670337 other downstream 980082 5105894 ~ 5108387 (-)
LOC122351979 NA other upstream 267 6099071 ~ 6099912 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other upstream 148096 6246900 ~ 6261069 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other upstream 972181 7070985 ~ 7153954 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 1915645 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 1977664 8076468 ~ 8094847 (-)

Expression


Co-expression Network