LOC122351469 (col4a1,LOC107557928,LOC107715912,LOC107688716,LOC107702910,LOC107721605)


Basic Information

Item Value
gene id LOC122351469
gene name col4a1,LOC107557928,LOC107715912,LOC107688716,LOC107702910,LOC107721605
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6177073 ~ 6193230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248545.1
ATGGGTTCCCCTGGCGCTCACGGTGAGCCTGGTGATGTCTTTGTTGCTCCAGGGCTGAAGGGAGATAAGGGTTTACCTGGCACTACTGGAGACAGAGGGTTTCCAGGTGTTGATGGGTTACCAGGAAAAGATGGCCAGCCAGGGCTACCTGGAACAAAGGGAGAGCCTGCTAGATTTGGTATTAAGGGTGATCGCGGCCTGGATGGAGATCCTGGTTTTCCTGGCCCTCCGGGTGAGAGGACCCCAGGTCTTCCAGGCATAGGTCGGCCTGGTGAACCTGGTGAAAAAGGCTCAGCAGGCCTGCCTGGTTCACCAGGAAACCCAGGTTTACCAgGAGCTAAAGGCGAAGCTGGTAAAATTTATAGCTTACCTGGACCTCAGGGTGTCCCTGGACCTCGTGGAGAGGTTGGCAGACCTGGTCTTCAGGGTGACAGAGGTTTTCCAGGTGAACGTGGAATTTCAGGATTTCCAGGAGACAAAGGTGACCCTGGACTGCCAGGAATCGGCCTGCCGGGGCCTCCAGGACCAAAAGGCAAAGATACTCTGGGATTCCAGGTCCTGCTGGGATTCCAGGAGAGCCTGGTCGACCAGGTCAAGATGGCTTGCCTGGTCGTGCAGGAACACCTGGGCAAAAAGGGTCTTCCTGGTCCTAAAGGTGTCGTAGGTCAGCCAGGACTGCCAGGATTTCCAGGGGAGAAAGGTACTGCTGGACCACCAGGAGCTCGTGGTGCAGTGGGGCCGCCAGGTCCTCCAGGGCTTGGGGATCCTGGACCACCTGGACCAATGGGGCCACCTGGAGGCCCTGGACCCCTCGGTCGGATTGGTATAAAGGGTGATAAAGGTTCTCAAGGCCTACCTGGTTTAGACATGCCTGGCCCTCCAGGAGACAGGGGTAGCCCTGGTGTCCCAGGTATACCAGGACCAAAGGGTTTGCCAGGGGAACTAGGACCTCCGGGTAGGGATGGCTTCCCTGGTGAACGTGgtccAAAAGGAGAAATTGGAATCATGGGAACGACAGGACCCCCTGGACATTTAGGTCCTGTTGGAAACCCTGGAGAGCCAGGACCAAAAGGTGACCCTGGTTTGACTGGTGTCAGGGGAGTGTTTGGTGATCAGGGTCCCAAGGGTGAGAGAGGAGAGCCGGGCATACAGGGGCCACCAGGAAACATGAGTGATATTGACATGGTGCATTTGAAAGGGGACAAAGGAGACATTGGAGACAGAGGTGATCCTGGTCCCACCGGAGAAAGGGGGTTTGCTGGAACACCAGGAGACCCTGGAATGCCAGGAAAAGATGGAATGCCAGGTTCACCTGGACAGCAAGGTCAGAAAGGAGACCCTGGAGTCCCCGGGGAGCCAGGACAAACTGGAGAAACTGGAGACCCAGGTGCAAGAGGAGACATGGGATACCCAGGTTCAATGGGGCCAAAAGGTATTAAAGGTGTTGGTGGGTCACCGGGTCACCCTGGATTTAAGGGGACTGATGGCTCCAAAGGAGATAAAGGAGAACCTGGTCCAGCAGGAATAGGAATGCCTGGTCCCCCAGGACAGAAGGGAAATGTTGGTTCCCCCGGTTTCCCTGGTGAACCTGGACTGAAGGGACAGAAGGGTACAATGGGCATCCCAGGAAATCCTGGAACTCAAGGAGCTAAAGGAGACACAGGATTGGCAGTCCAGGAAAACCAGGTGAAAAAGGTGTCAGTGGGTTGCCAGGGTCTCCAGGAGAATCTGGATTTCAAGGACGTCCAGCACAGTGAACCGGGCCTACAGGGTCCACCAGGTCAACCTGGGGAGAAAGGCGAAGCAGGGGTAGATGGCATTCCTGGATTTgtaggagagagaggagaaccTGGTATACCTGGCACAGGTTTTCCAGGATCCCGTGGAGAAGCTGGCAGCAAAGGTGACAAGGGTAACCCTGGTCTTCCTGGCATTAACGGGAGTCCAGGCATTCCTGGAATCAAAGGTGAGAAGGGTCTGCCTGGATTCCCAGGGGACCAAGGGCATCCAGGAGAGAGAGGACTTCCAGGAATATCTATGGAGGGACCTAAAGGGGACCAGGGAGCTCAGGGACAACAAGGACAAAAGGCCCACCTGGTATACCTGGCAGTGCTGGAGCTAAAGGAGAAAAGGGGAGACGTGGGCTTCCCTGGCCCACAAGGCTCTCAAGGATATAAAGGAGATAAAGGTTTCACTGGTGCCTCTGGTGAGCCTGGATTGCCTGGCTATAATGGACCAAAGGGTGAGATGGGACCACAGGGTGTTCCTGGGTTCCCTGGTACAAAGGGTGAGCATGGAGTAATTGGTCCTAAGGGTGACGGAGGTGACAGAGGATTCCCAGGTCTTAAAGgTACTGAAGGCCCCCCTGGACCACCTGGGCCTCCCACATTTATAAAGGGAGATCCTGGTCCTCCAGGACCTCAGGGTCCCCAAGGGCTGATCGGAATTCAAGGCTACCCTGGACAGAAAGGACAACAGGGTGTGATGGGACTTCAGGGTTTAAAAGGATCCGATGGAACACCTGGCTATAATGGACACCCTGGGGCCAAAGGAGAGCCCGGACAAACCGGACCTTCTGGCCCCAGAGGGTACCCTGGACCTCCAGGACCTAGTGGTTTCCCTGGTGGCATCGGCCCTCCTGGCCCTGCATCAATGGACCACGGCTTCCTTGTAACACGCCACAGTCAGAGTATCGATATTCCAGTATGTCCAGCAGGAACAACGCCGATCTATGATGGATATTCACTGCTTTATGTACAAGGCAACGAGAGGTCACATGGACAAGACCTAGGCACAGCTGGTAGCTGCCTAAGGAAGTTCAGCCCAATGCCTTTCCTCTTCTGCAACATCAACAATCCAATGCCCATGAGCATGGCCCCTGTTACCGGTGAGAGCATCAAACCCTTTATCAGCAGATGTGCAGTTTGTGAGGCTCCTGCAATGGTAATAGCTGTGCACAGTCAGACCATACTGATCCCACCCTGTCCTCGTGGGTGGGATTCTCTCTGGATTGGATACTCTTTCGTCATGCACACTAGTGCTGGTGCTGAGGGCTCCGGTCAGGCGCTGGCCTCCCCAGGTTCTTGCCTGGAAGAGTTCCGCTCAGCTCCCTTCATCGAGTGTCACGGTCGCGGCACCTGCAACTATTATGCTAACTCCTACAGCTTCTGGTTAGCCACCATAGAGGACAACGAAATGTTTAGCAAACCTGTCCCCACAACGCTAAAGGCTGGGAATCTACGAACTCACATCAGCAGGTGTCAAGTGTGCATGAAGAAGAATGACCTTGCACACAGTGATCTGAGTGTGGGTGTTTATGGGGTGAAAGAAGCAGCTGAGTAG

Function

symbol description
col4a1 Predicted to be an extracellular matrix structural constituent. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Is expressed in several structures, including cardiovascular system; eye; hypodermis; optic fissure; and paraxial mesoderm. Human ortholog(s) of this gene implicated in COL4A1-related familial vascular leukoencephalopathy; myocardial infarction; and retinal arterial tortuosity. Orthologous to human COL4A1 (collagen type IV alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(IV) chain-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248545.1 True 3342 mRNA 0.55 31 6177073 6193230

Neighbor

gene id symbol gene type direction distance location
LOC122351516 LOC107720938,LOC107752607,LOC107689504,LOC107549895,LOC107549742 coding upstream 146751 6005352 ~ 6030322 (+)
LOC122351517 NA coding upstream 172721 6002775 ~ 6004352 (+)
LOC122351464 LOC107752607,LOC107720938,LOC107689504,LOC107549742,LOC107549895,LOC107576878 coding upstream 174436 5983889 ~ 6002637 (+)
LOC122351459 dip2a,LOC107752588,LOC107720936,LOC107670331 coding upstream 311699 5816845 ~ 5865374 (+)
LOC122351927 epha3,LOC107738584,LOC107676997 coding upstream 445003 5629122 ~ 5732070 (+)
irs2b irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 coding downstream 53583 6246813 ~ 6261089 (+)
pdzk1 LOC107688772,LOC107721583,LOC107703056,LOC107551063,LOC107716762,LOC107602882 coding downstream 516976 6710206 ~ 6717797 (+)
st6gal2a st6gal2a,LOC107721598,LOC107688722,LOC107676409,LOC107716800,LOC107602911,LOC107551073 coding downstream 570639 6763869 ~ 6813022 (+)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding downstream 649348 6842578 ~ 6880028 (+)
fhl2a fhl2a,fhl2,LOC107716797,LOC107676452,LOC107688730,LOC107721574,LOC108266723 coding downstream 763291 6956521 ~ 6964046 (+)
G68167 NA non-coding upstream 12009 6141619 ~ 6165064 (+)
G68160 NA non-coding upstream 73376 6088480 ~ 6103697 (+)
G68085 NA non-coding upstream 262792 5834140 ~ 5914281 (+)
G68101 LOC107670329,LOC107549899,LOC107730347,LOC107730410 non-coding upstream 284866 5890348 ~ 5892207 (+)
G68069 NA non-coding upstream 379581 5796094 ~ 5797492 (+)
G68195 NA non-coding downstream 102058 6295288 ~ 6323460 (+)
G68246 NA non-coding downstream 406297 6599527 ~ 6599806 (+)
G68247 NA non-coding downstream 479875 6673105 ~ 6673650 (+)
G68248 NA non-coding downstream 489394 6682624 ~ 6684496 (+)
G68251 LOC107551047,LOC107702999,LOC107716777,LOC107688771,LOC107602892,LOC100331465 non-coding downstream 498112 6691342 ~ 6691840 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 203950 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 291320 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 719544 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 719810 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 720230 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 2148065 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 2237881 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 2267514 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 2670157 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 2673867 8867097 ~ 8871633 (+)

Expression


Co-expression Network