LOC122351474 (LOC107600885,LOC107659206)


Basic Information

Item Value
gene id LOC122351474
gene name LOC107600885,LOC107659206
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8204280 ~ 8209919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248551.1
ATGAACAGAAATACCTCAAGTGTCCCGGCAAAAACACGATTTGCAGGCGAAATtggaaagaaagaggaagatgAAATCTGCCGATGGGTGATTCACCCCCGGAGTCGCATCAGGCATTACTATGTTATGTTTATGGTGATCTTGACATTCGTGAACCTTATAACGATCCCTCTAGACATGGCATTTTCTGAAGACATGCAGGGTACGGCCCACAAATACTGGGTGGCCTTCAATGTATTCTCAGATGCCATGTTTTGCCTTGATGTTGCCATAAATTTTCAAATGGGTATATTCAATGACGACGGTCAGGCCATCCTGGATCCAAAATTAATCAGAAATGATTATTTCAAAAGTTGGTTTTGTCCTGATGTGGTGGCTGCCTTTCCGGTTGACATTGTCATTGTTATTGTGGAGCACTTTTATCACGCCGACACTGATTTGCTGATGGCTTCGAAGCTGGTGCGGATACTCATGTTTGCAAGGATTTTCAGTCTGATCCGTTTACTCCGTGTGCCGAAGCTTCTGAGATTCTGCTTTGAGTTGGAAAGTGTCTCTGACATTCAGCTTGAAGAAGTCAAGAAGTTTTTCCGGGTTTTTTTCGTGTTCATGTTGATAATCCTGGTTTGGCACTGGAACACGTGTCTTCACTACTTCATATCTATACTGGAGGAGTTTCCCGACGACTGCTGGGTCATGCAAGACAATATCAAGAATACCACTATCGGGGAAAAATACTCCTTTTCTTCCTTCAGAGCTTTCTCTCAACTGGCCTGGATTTCTCCTAAATCTATTCAATCGCCAACTCgtatGGCAGAGCGGTGGATGGCTCTTGTGAGCATGGTGGTTGGGCTCATCATGGGTTTTGCTCTTATCGCCTGCTTGATCGGAACAGTCGGAAGCATATCTACAACTGGCAATGAATACAAGAAAAAGatcaGCCAGCTGCAGTCGTCCAACATGTTCAAGAAGCTGCCCAGGGCTCTGCGCCTACGTGTCACTGCCCAGTACAAGTGGCAATATGACAAGAAGAACATCCTTGATCTAGTGTCAGAACGGCTGAGAAAGGATATGATGAAAGACATGTGCCCCAACTTGCTGAGCAAGAAGTCCACGTTCATGAAGCAAAGCAGAGAGTTTACAGAAGCAATCCTGGTGAAGTTGGACTACGAGTTATTCCACGCAGAAGACGTTATCATTTACCAGGATGATAAAACTGACCACATGTTCTTCATTGAGCATGGACGTGTGCTGGTGAAGAACGAATTTCTCCAAATGGGGCTGAGCGATGGAGACCACTTTGGAGagaTCAGCTTCCTGTTCGGTGGAAGACAGCTGGCCTCAGTTTCAGCCCTGACCGCCTGCAGTGTCTTCTCTTTGTCATTACAACATTTTGAGGGGATCAAGGAAGAATTTCCAGACATTGTGAAGGAACTGAGGGAAGAAGCTCAGTTGCTCAAAAATGATCTTGAGGGTAAGCCGCTTTCATATACACTGCAGGTGACAGAATCTCTCTGATCGAAGTCAGTTTAACACGCTTTTCACAGCTTTACTTCTGTAATGTTACATATTTGCAAGAGAAACTGAATTGtaatagagaaaaaaatgtaggaTGTGACTTGAAACAATTAAATAAGGTACATATTGACATATACACTAAGTAGATATGCTACACACTGATTGCAAAGTGATTGTAATGATTTTATGACtttatggttttttttaaaggtgttgGGCTGGAAGAAGTTACATCCGCATCGAACAGTGTGTGACGACGATCAGGATCTTTCAGTTTAATCCACTGAATAACAGTATTTTcttcattaataattacaaaaataaaattgacattagatttatatatttttgtgtataggTAAGATgcttaattctgtcatttttatttgaattgttattaatgtatattttgatgaataatatagcaaacaaaaaaagttaccgTGTATGTACTTGTAATTTCTGTATTATTACAGTTCAGTCTGTTTATTATATGCTTGCAGACATCATGACACACAGGTCCAGACAAagatgttaaattaatatttaaaaaaaatacttaataaacacatgattaaatatttacaccGGACAAATCTTTCAAGCTCCGGACAAAAAAGTAGTATTAATGTAGTCCTTATTTTCATCTCTACTACTCTCATAAtcatgcataaataatgcaaatggaAGTCTtagatataatattattacactgtTTGATCCATTTAAAAtctaagactttttttaatatgacttttttaatgtgtgtgaaaacaaaGAAACCAGAATTCCTGTAAAAATGCTTCTTGTCTGAAACTGAGCTGATAAAACTGGCTGTTATGAATGATTGAAAATGCATcacataaaaagaataaaataaacctgcgGAAATATCTTAAATGGAATAACCTTTTCCTCACTGGCAAGCAGGTAAAGAGGCCTGTGGGTTCCCGTGTGTCCTCCAGAGGGCGCAGCTCCTAAAGATAAATCCCCTTTACCACTTCATTTGAATCTTTTTGTACTCCAAATTCTATAATCTTTTCAGTATATTCATTGCAAAGGACCAAAATCAGCCTGTGAAAtagtttaaatacaaaacaagacGCATTTCCGAAAGCTTCTGCGAGGGTACGATCAATATCTAGCGGATATATCTGTCCTTCAACAGCAGCTCTGGG

Function

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248551.1 True 2693 mRNA 0.39 10 8204280 8209919

Neighbor

gene id symbol gene type direction distance location
mpp4a mpp4a,LOC107738104,LOC107688761,LOC107752892,LOC107592993,LOC107668389 coding downstream 129834 8064653 ~ 8074446 (-)
tmem237a tmem237a,LOC107738107,LOC107668390,LOC107752911 coding downstream 141185 8056543 ~ 8063095 (-)
abi2a abi2,abi2a,LOC107738105,LOC107752895,LOC107592995,LOC103029249,LOC108423993,LOC107688767 coding downstream 149112 8026229 ~ 8055168 (-)
LOC122352095 LOC107688783,LOC107738103,LOC107596557 coding downstream 246942 7955089 ~ 7957338 (-)
si:ch211-67e16.3 NA coding downstream 251998 7948380 ~ 7952282 (-)
carf carf,LOC107751498 coding upstream 2869 8212788 ~ 8222003 (-)
fam117bb fam117bb,fam117b,LOC107751499,LOC107752888,LOC107596526,LOC107668400,LOC107677778 coding upstream 13782 8223701 ~ 8257719 (-)
bmpr2b bmpr2,bmpr2b,LOC107668372,LOC107593012 coding upstream 48024 8257943 ~ 8316394 (-)
si:dkey-230p4.1 LOC107677784,LOC107596544,LOC107749895 coding upstream 107044 8316963 ~ 8334613 (-)
hce2l1 si:ch211-167j6.5,LOC107749894,LOC107677777,LOC107596543,LOC107752908,LOC107668352,LOC107593026 coding upstream 126509 8336428 ~ 8338371 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding downstream 382391 7820008 ~ 7821889 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding downstream 385448 7815249 ~ 7818832 (-)
G68489 NA non-coding downstream 822772 7381290 ~ 7381508 (-)
G68473 NA non-coding downstream 862786 7327829 ~ 7341494 (-)
LOC122352164 NA non-coding downstream 1168919 6982678 ~ 7035361 (-)
LOC122352023 NA non-coding upstream 260944 8470863 ~ 8474578 (-)
G68822 NA non-coding upstream 551852 8761771 ~ 8835225 (-)
G68826 NA non-coding upstream 583942 8793861 ~ 8801749 (-)
G68830 NA non-coding upstream 592466 8802385 ~ 8805405 (-)
G68839 NA non-coding upstream 606601 8816520 ~ 8817618 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 109433 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 179608 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 1050326 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 1943211 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 2104368 6099071 ~ 6099912 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 1698269 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 2223588 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 2305353 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 2470239 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 3186747 11396666 ~ 11493120 (-)

Expression


Co-expression Network