hce2l1 (si:ch211-167j6.5,LOC107749894,LOC107677777,LOC107596543,LOC107752908,LOC107668352,LOC107593026)


Basic Information

Item Value
gene id hce2l1
gene name si:ch211-167j6.5,LOC107749894,LOC107677777,LOC107596543,LOC107752908,LOC107668352,LOC107593026
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8336428 ~ 8338371 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248552.1
ATGCTTTATGTGGGTATTTTTGTGGGACTGGTGTTAGAGTCCTGGTCTTTACCTGTGCAGaaCTCCTCACTGGTTCATCAGACAAGGCTGAGGTCAAAGAGAGAATATCCAgAGCATTATGTGACGCCTGAGGACATGAATGCCATGGATAGAATTCTCAGAGTCAATCAATGTATGTTCGTGTCCAGAGGTTTTCCTTTAAAAGAGGGTGACATCCTGAGTTCAGGATCCCGCAGTGCCATCGCATGTTTAGGAGATTCTTGCCGCTGGCCCAGATCCGTTGACGGTTTTGTGTATGTACCGTACATCATCTCTCCAATATATGATGATATGGACAGAATCACCATAGAAACAGGAATGTTAGACATTTCCTCTGCAACGTGTGTGAAGTTTGTGCCTCGCACACATGAAGCAAACTTCCTTCATATCCAGTCTAGAACCGGCTGCTGGTCATATCTGGGAATGATAGGAGGCAGTCAGACCGTGTCTTTGCAGTCTCCTGGCTGTATGTGGTCAGGAGTGGCAGCTCATGAGCTAATGCACGCTCTGGGATTTGTACACGAACAGTCCCGCTCTGATCGTGACCACCACGTCTCCATCCTGTGGGAAAACATCATAGACAATCAAAGGCACAACTTTAAGAAGTATGAGACAAACAACCTCAATACGGCATATGACTATAGTTCTGTCATGCACTACGGGAGGTATGCCTTCTCAGAGGATGGCGGACCCACCATCATCCCTAAACCAGACCCGTACATTCCCATCGGCCAGCGAGACGGGCCAAGTCTGACAGacattcacaaaataaacatattgtaTAACTGTGGTGGCCGTGTTTGA

Function

NR:

description
PREDICTED: high choriolytic enzyme 1-like

GO: NA

KEGG:

id description
K08076 E3.4.24.21; astacin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248552.1 True 843 mRNA 0.47 9 8336428 8338371

Neighbor

gene id symbol gene type direction distance location
si:dkey-230p4.1 LOC107677784,LOC107596544,LOC107749895 coding downstream 1815 8316963 ~ 8334613 (-)
bmpr2b bmpr2,bmpr2b,LOC107668372,LOC107593012 coding downstream 20034 8257943 ~ 8316394 (-)
fam117bb fam117bb,fam117b,LOC107751499,LOC107752888,LOC107596526,LOC107668400,LOC107677778 coding downstream 78709 8223701 ~ 8257719 (-)
carf carf,LOC107751498 coding downstream 114425 8212788 ~ 8222003 (-)
LOC122351474 LOC107600885,LOC107659206 coding downstream 126509 8204280 ~ 8209919 (-)
LOC122351780 LOC107677781,LOC107749905,LOC107596523,LOC107752886,LOC107668380,LOC107593025,LOC100003133 coding upstream 623 8338994 ~ 8341460 (-)
trnak-uuu_106 NA coding upstream 2572 8340943 ~ 8341015 (-)
glb1l glb1l,LOC107596522,LOC107677787,LOC107752925,LOC107749887 coding upstream 10867 8349238 ~ 8355856 (-)
tmem41aa tmem41aa,LOC107749879,LOC107596517,LOC107663880,LOC107668406,LOC107752878,LOC107593004,LOC105908658,LOC108410768 coding upstream 168561 8506932 ~ 8510286 (-)
si:dkey-69o16.5 si:dkey-69o16.5,LOC107663837,LOC107749873,LOC108411906,LOC100708275 coding upstream 486292 8824663 ~ 8827049 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding downstream 514539 7820008 ~ 7821889 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding downstream 517596 7815249 ~ 7818832 (-)
G68489 NA non-coding downstream 954920 7381290 ~ 7381508 (-)
G68473 NA non-coding downstream 994934 7327829 ~ 7341494 (-)
LOC122352164 NA non-coding downstream 1301067 6982678 ~ 7035361 (-)
LOC122352023 NA non-coding upstream 132492 8470863 ~ 8474578 (-)
G68822 NA non-coding upstream 423400 8761771 ~ 8835225 (-)
G68826 NA non-coding upstream 455490 8793861 ~ 8801749 (-)
G68830 NA non-coding upstream 464014 8802385 ~ 8805405 (-)
G68839 NA non-coding upstream 478149 8816520 ~ 8817618 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 241581 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 311756 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 1182474 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 2075359 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 2236516 6099071 ~ 6099912 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 1569817 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 2095136 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 2176901 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 2341787 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 3058295 11396666 ~ 11493120 (-)

Expression


Co-expression Network