ybey (ybey,LOC107670327,LOC107720944,LOC107689501,LOC107752586)


Basic Information

Item Value
gene id ybey
gene name ybey,LOC107670327,LOC107720944,LOC107689501,LOC107752586
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5138114 ~ 5139999 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248555.1
CACGCGCACTTCCGGTTTTCAAATCAATGAACAGCAAACTCGGGGCCATggcagttttattaaaatgacagttGTCGTTGTTATGCGTTTTCTGAACATGCGTGGTGTTTTTGGTACTTCCCGTAGGCAGCGAAACGAATCCGTGTACGCCTCTCCGTCCGAGACGGTCACCTTGTGAACGGCGGCGAACGAGAAAAACCTCCAGCGGGTCGGGGTGCGTTTAGCTCACACCTTTCATTTATCGTTTAATCGCGCTTCGACCATGGGCGTAGTTCTGCGGAACCTACAGAACGTGGTTCCCCTGAGACGCGCCAAACTGCGCAAAGACGTGGAGATCCTCAGACACATCTTCGGGGTGCAGAAGTTTGACATGAGCGTGATATGCGTGGACAACCGCAAGATTCAGCGCATCAACCACATCTACAGGAAGAAGAACCAGCCCACAGACGTGCTGTCTTTCCCCTTCTATGAGGATCTGAGGCCAGGCAAAATCCCATGCGCCCTGCAAAGAGACGAGTACAACTTGGGTGACATCTTCTTAGGGGTAGAGCATGTAATGCATCAGTGTAAAGAGTCCTCGCAGGATCTTCACGAAGCCCTTACAGTGGTCACTTCTCATGGGATCTGCCATTTACTGGGATACAGACATGAAACTGAAGAGGAGTGGAACGAGATGCAACAGAAAGAGAGCTACATTCTCAGCGAGTTCAACAGGATAACAGGCAGCCACCTCGAGCCCCTCACGAAGAGATGCACATAGCAATGGATACCAATGGAACACacttgatttttcttttttctaaataaattttatttaaaatgtgtttaaggAAGTCAAAGACCGAATACTAAGCAATTAAGTAGAGCTTATACCACTGTTTCAGAGAACACCATACACACAACGTCCAAACAAGTCCCACTCTTCCATGAACCTACTCGGATGATCAGAACAGAAAACACGAAGAAAGTGGTTACCGAAGACGTGACAATGAGAACAGTACAGTACAAATCAGACAGTGAACAAGatcctaaaataaataacatcagCTGACTTCATGTGAGGCATTCTCCTCAGATGCTCACTATATTTAATAAAGGTGTGAACGGTTTTCATTTGATGTCTTTCTGAAGACAGACATTCTACACAATGGCTGTGCAACTTCACTGTAAAGCTCTATatagaagaaaaactaaattgtttTACTAGGTCTGTAGGTGTGGAGAGGCATAAAGAATCTTGAAGTgagatcttaaaaaaaaaaaaaaaaaaaaaaacaa
>XM_043248556.1
CACGCGCACTTCCGGTTTTCAAATCAATGAACAGCAAACTCGGGGCCATggcagttttattaaaatgacagttGTCGTTGTTATGCGTTTTCTGAACATGCGTGGTGTTTTTGGTACTTCCCGTAGGCAGCGAAACGAATCCGTGTACGCCTCTCCGTCCGAGACGGTCACCTTGTGAACGGCGGCGAACGAGAAAAACCTCCAGCGGGTCGGGGTGCGTTTAGCTCACACCTTTCATTTATCGTTTAATCGCGCTTCGACCATGGGCGTAGTTCTGCGGAACCTACAGAACGTGGTTCCCCTGAGACGCGCCAAACTGCGCAAAGACGTGGAGATCCTCAGACACATCTTCGGGGTGCAGAAGTTTGACATGAGCGTGATATGCGTGGACAACCGCAAGATTCAGCGCATCAACCACATCTACAGGAAGAAGAACCAGCCCACAGACGTGCTGTCTTTCCCCTTCTATGAGGATCTGAGGCCAGGCAAAATCCCATGCGCCCTGCAAAGAGACGAGTACAACTTGGGTGACATCTTCTTAGGGGTAGAGCATGTAATGCATCAGTGTAAAGAGTCCTCGCAGGATCTTCACGAAGCCCTTACAATGCAACAGAAAGAGAGCTACATTCTCAGCGAGTTCAACAGGATAACAGGCAGCCACCTCGAGCCCCTCACGAAGAGATGCACATAGCAATGGATACCAATGGAACACacttgatttttcttttttctaaataaattttatttaaaatgtgtttaaggAAGTCAAAGACCGAATACTAAGCAATTAAGTAGAGCTTATACCACTGTTTCAGAGAACACCATACACACAACGTCCAAACAAGTCCCACTCTTCCATGAACCTACTCGGATGATCAGAACAGAAAACACGAAGAAAGTGGTTACCGAAGACGTGACAATGAGAACAGTACAGTACAAATCAGACAGTGAACAAGatcctaaaataaataacatcagCTGACTTCATGTGAGGCATTCTCCTCAGATGCTCACTATATTTAATAAAGGTGTGAACGGTTTTCATTTGATGTCTTTCTGAAGACAGACATTCTACACAATGGCTGTGCAACTTCACTGTAAAGCTCTATatagaagaaaaactaaattgtttTACTAGGTCTGTAGGTGTGGAGAGGCATAAAGAATCTTGAAGTgagatcttaaaaaaaaaaaaaaaaaaaaaaacaa

Function

symbol description
ybey Predicted to enable endonuclease activity; metal ion binding activity; and metalloendopeptidase activity. Predicted to act upstream of or within rRNA processing. Orthologous to human YBEY (ybeY metalloendoribonuclease).

NR:

description
putative ribonuclease isoform X2

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248555.1 True 1278 mRNA 0.44 4 5138114 5139999
XM_043248556.1 False 1209 mRNA 0.44 3 5138114 5139999

Neighbor

gene id symbol gene type direction distance location
insig2 insig2,LOC107549777,LOC107689500,LOC107720943,LOC107670326,LOC107549914,LOC107752584 coding downstream 10016 5122207 ~ 5128098 (-)
steap3 steap3,LOC107689493,LOC107747243,LOC107549780,LOC107752579 coding downstream 115759 5017068 ~ 5022355 (-)
tmem37 tmem37,LOC107752614,LOC107689494,LOC107747239,LOC107670320,LOC107560813 coding downstream 128600 5008185 ~ 5009514 (-)
LOC122351620 rap2a,LOC100332969,LOC103043765,LOC107549783,LOC103391592,LOC105907999,LOC106512668,LOC106582448 coding downstream 152518 4977659 ~ 4985596 (-)
zmp:0000001200 dock9,LOC107689489 coding downstream 216558 4870192 ~ 4921556 (-)
LOC122351912 LOC107670332,LOC107549921,LOC107689507,LOC107752589,LOC107549740 coding upstream 157507 5297506 ~ 5319587 (-)
LOC122351913 LOC107670336,LOC107720941 coding upstream 183730 5323729 ~ 5341221 (-)
LOC122351922 NA coding upstream 206161 5346160 ~ 5349103 (-)
bzw1b bzw1b,LOC107689509,LOC107549769,LOC107752595,LOC108435180 coding upstream 251354 5391353 ~ 5394547 (-)
myo1b myo1b,LOC107748838,LOC107664008 coding upstream 323315 5463314 ~ 5521286 (-)
G67928 NA non-coding downstream 37337 5099906 ~ 5100777 (-)
G67923 NA non-coding downstream 48721 5089182 ~ 5089393 (-)
G67913 NA non-coding downstream 86822 5050429 ~ 5051292 (-)
G67911 NA non-coding downstream 110517 5027044 ~ 5027597 (-)
G67904 NA non-coding downstream 131333 5005294 ~ 5006781 (-)
G67917 NA non-coding upstream 1791 5141790 ~ 5181500 (-)
G68048 NA non-coding upstream 575342 5715341 ~ 5715637 (-)
G68053 NA non-coding upstream 594925 5734924 ~ 5735172 (-)
G68055 NA non-coding upstream 595338 5735337 ~ 5735783 (-)
G68082 NA non-coding upstream 665941 5805940 ~ 5806327 (-)
G67930 LOC107670337 other downstream 29727 5105894 ~ 5108387 (-)
G67912 NA other downstream 108639 5028926 ~ 5029475 (-)
dbi dbi,LOC107560815,LOC107747240,LOC107752581 other downstream 123301 5010513 ~ 5014813 (-)
G67863 farp1,LOC107747234,LOC107670305,LOC107689492,LOC107752600,LOC107549748,LOC101883674 other downstream 154367 4959717 ~ 4983747 (-)
LOC122351456 LOC107747234,LOC107560802,LOC107670305,LOC107752600,LOC107689492,LOC107549748,LOC101883674 other downstream 164159 4856650 ~ 4973955 (-)
LOC122351925 NA other upstream 209956 5349955 ~ 5369589 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other upstream 256866 5396865 ~ 5399880 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other upstream 772856 5912855 ~ 5931136 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other upstream 903276 6043275 ~ 6043925 (-)
LOC122351979 NA other upstream 959072 6099071 ~ 6099912 (-)

Expression


Co-expression Network