crygs2 (crygs2,LOC107663869,LOC107551958,LOC107733648,LOC107598173,LOC107698534)


Basic Information

Item Value
gene id crygs2
gene name crygs2,LOC107663869,LOC107551958,LOC107733648,LOC107598173,LOC107698534
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11224548 ~ 11225833 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248564.1
aatgcttttcaacATTACCTCGTTGTCTCCCAGATTGTGTTTTTCGAGGACAAAAACTTTCAGGGTCGCCGTTACGAGTGTGACAGTGATTGCTCTGACTTCCATACCTATCTGAGCTGCTGCAATTCTATTCGTGTGGAAAGTGGGGCCTGGGTGGTTTACGAGCGGCCCAACTACACTGGTAACCGGTATCTGCTAACCAGAGGAGACTATCCTGAATACCTGGGCTGGATGGGCCTCAGTGACTGTCTCAGTTCCTGCAAGCTCATCCGCTTTGCAAGTGGAATGCAGTACAAGGTTCAGTTGTACGACAAGCCTGACTTCACAGGCCAGGCTATAGAGTCTATTGAAGACTGTCCATCTGTGCTGGAGAGGTTTCGTCTGAGAGAGGTCCATTCTTGCAAAGTTCTGGATGGATACTGGATCTTCTACGAGCATCCTAACTACCGTGGCCACCAGTACTTCCTGGAGAAAGGCCACTACCGTAAACCGGTGGAGTGGGGTGCGGTCTGTCCCACAGTGCAGTCTTTCCGTCGATTCACCGAGTGA

Function

symbol description
crygs2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract 20 multiple types. Orthologous to human CRYGS (crystallin gamma S).

NR:

description
beta-crystallin S-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248564.1 True 549 mRNA 0.51 2 11224548 11225833

Neighbor

gene id symbol gene type direction distance location
tbccd1 tbccd1,LOC107551957,LOC107663868,LOC107733647,LOC107738513,LOC107698532,LOC107598171 coding upstream 2377 11217132 ~ 11222171 (+)
dbr1 dbr1,LOC107733644,LOC107738510,LOC107663903,LOC107598170,LOC107698529,LOC107551939 coding upstream 14967 11205837 ~ 11209581 (+)
kcnh3 kcnh3,LOC107663882,LOC107733652,LOC107551953,LOC107598168,LOC107738522,LOC107698521,LOC108430476,LOC108266388,LOC105016302 coding upstream 31621 11099044 ~ 11192927 (+)
ccnyl1 ccnyl1,LOC107733650,LOC107663902,LOC107698526,LOC107738507 coding upstream 183590 11031448 ~ 11040958 (+)
klf7b klf7b,klf7,LOC107738504,LOC107598162,LOC107733646,LOC107700220,LOC107663863,LOC107551946 coding upstream 228492 10954192 ~ 10996056 (+)
gtf2e1 gtf2e1,LOC107733656,LOC107738514 coding downstream 6174 11232007 ~ 11244430 (+)
stxbp5l stxbp5l,LOC107738516,LOC107663865,LOC107675353 coding downstream 37893 11263726 ~ 11372571 (+)
poglut2 kdelc1,LOC107567637,LOC107733631,LOC107675345 coding downstream 147093 11372926 ~ 11379422 (+)
tex30 tex30,LOC107663828,LOC107567637 coding downstream 154037 11379870 ~ 11381952 (+)
nepro si:dkey-22a1.3,LOC107733637 coding downstream 156559 11382392 ~ 11385994 (+)
G69417 armc8,LOC107733643,LOC107663904,LOC107551954 non-coding upstream 23383 11200651 ~ 11201165 (+)
G69403 NA non-coding upstream 134114 11063601 ~ 11090434 (+)
G69358 NA non-coding upstream 283024 10941308 ~ 10941524 (+)
G69355 NA non-coding upstream 301071 10923149 ~ 10923477 (+)
G69340 LOC107733630,LOC107551942,LOC107663909 non-coding upstream 389866 10833788 ~ 10834682 (+)
G69459 NA non-coding downstream 19318 11245151 ~ 11245478 (+)
G69483 NA non-coding downstream 194372 11420205 ~ 11423317 (+)
G69518 NA non-coding downstream 753948 11979781 ~ 12009922 (+)
G69539 NA non-coding downstream 974101 12199934 ~ 12200597 (+)
G69578 NA non-coding downstream 1096418 12322251 ~ 12322532 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other upstream 194139 11021736 ~ 11030409 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 829318 10328731 ~ 10395230 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 1049765 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 1111192 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 1657551 9443125 ~ 9566997 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 239771 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 820666 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 1209155 12434988 ~ 12452365 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 1401702 12627535 ~ 12629535 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other downstream 1506465 12732298 ~ 12803408 (+)

Expression


Co-expression Network