CI01000000_02534790_02541012


Basic Information

Item Value
gene id CI01000000_02534790_02541012
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2534790 ~ 2541023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_02534790_02541012.mRNA
AACCAACGAGGTTGGTGAAGTCAGCGGCTGCCGCATTAGTCAAGCGGGCGGAAAACGGCTGCTTCCAGGATCTGGAAATCTCACTATGCAGATCACTGAAAAAGGGCAGCTTTCTCCGTAATGGCCTAGAATTGGGGCCACTCAAAAACCTCTCATCTAACAAAGAAGAAGTCCAGAGAAAGAGACAAAAGACCCTGCCAAACTTCCAGGACTACAGCGGAGCAGGAGGCGGAGCTGGAGGCATGTTTAGAGGAGGAGGGGGTGGGTCTACAGCAGGGGGCGGCCCCAGTGGAGGAGGAGGACATTTCTTCCAGGGATATCAAAATTATAACAATTATGGGTCTGGATACAACTTCTCAGGCATGGGAGGAGGTGGGACCACCATCAAGCATACATGTCAAGAACCAGTAGAAGACAGCGATGAAGATAGCGACAGTGATACAGATGATGATCCCGCTTCTGGTGGAGTGGTGCGAATCTGTGCACAACCTGAACCTGTTCCCCTGAATCTGGGTGTGGCGAGTGATGACACACAGCCTACAGAATATCTTGAGTTAGACGCCACAGGCTGTGTGTTAGAGTCACATTTGGCTGAGCTAGCTGAAAGACAAGCTCAAGCTCTCTTTCATTACGCATTAAGTGGTGATGCTAGAATGCTTTTGGCTCCACAGCGCCCCCTCATGACCACTCAAGACGAGAATGGAGACACGGGTTTACATCTGGGAGTGATCCACAGTCAGACAGATGCCGTGCGAAATCTAGCTCAAGTCATCTCCGCTCTCCCTGGAGAGGATGTACTCAATATGAGGAATGATCTCTACCAGACTCCTTTGCACCTAGCAGTGTTGACGCAGCAGACAGAGGTAGTCGGGGCCTTATTGGAGGCCAAGGTAGACATCACACTGACAGATCGCCATGGAAACACGGCACTTCACCTGGCGGCTCAACAGAAAGAGGAAAGCATGCTGCGATTGCTCCTAAAGCACAAGTCAATGGCGCAGTTAACTAGCATCCCCAACACAGCAGGTCTCTGTCCGCTTCACCTGGCTGTAAAGGCGAACAGTTTGAGTTGTGTTCGGGCCCTCCTGGATGGCGGGGCAGATGTGGAGGTTCAGGAGCTTACGTGTGGCCGCACAGCACTTCATCTGGCCACAGAGCTGGGCAACCTTTCCCTCGCCGGCTGCCTCCTGCTGGAGGGTAACGCATGTGTAGACAGCGTCACCTACAATGGCTCCACTCCTCTGCACATTGCTGCAGGACGAGACTCAACTAAACTGAGCGCACTTCTAATGGCTGCAGGAGCAGATCCTCATAAGGAGAACTTTGAACCGCTATTCTTTAAAGATGATGAGCTGTGTGGCACATGTGAGGATGAGGAGGAGGATGAAGGCTATATCCCTGGGACAACCCCTCTGAACATGGCAACTTCCCCAGAGGTGTATGATATTCTCAATGGAGAAGAGTATCAGCCCACCACCATCGTCATTGCACCGCAAGGTATGAGCTCCAGGCTTTGTATTCTTGTAATGTTTATGCTGCTTCTGAACAAAAATATTCTTTGCTGAAATACTTTGTA

Function

NR:

description
NF-kappa-B 1 p105 subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_02534790_02541012.mRNA True 1576 mRNA 0.51 11 2534790 2541023

Neighbor

gene id symbol gene type direction distance location
CI01000000_02516813_02517287 NA coding upstream 17003 2516813 ~ 2517787 (+)
CI01000000_02496792_02498535 NA coding upstream 36196 2496744 ~ 2498594 (+)
CI01000000_02334112_02352906 NA coding upstream 181878 2333555 ~ 2353369 (+)
CI01000000_02237986_02243555 NA coding upstream 290970 2237694 ~ 2243820 (+)
CI01000000_02092375_02096188 POLR2B.L, RPB2, POLR2B coding upstream 438602 2092293 ~ 2096188 (+)
CI01000000_02553141_02553901 NA coding downstream 11752 2552775 ~ 2554149 (+)
CI01000000_02571143_02579505 NA coding downstream 30120 2571143 ~ 2579505 (+)
CI01000000_02586043_02587730 DGKQ coding downstream 45020 2586043 ~ 2587799 (+)
CI01000000_02608926_02617589 ABHD18 coding downstream 67903 2608926 ~ 2617965 (+)
CI01000000_02622249_02636433 FAM193B coding downstream 80914 2621937 ~ 2636482 (+)
G1475 NA non-coding upstream 185125 2348793 ~ 2349665 (+)
G1470 NA non-coding upstream 228125 2306406 ~ 2306665 (+)
G1448 NA non-coding upstream 256150 2278390 ~ 2278640 (+)
G1439 NA non-coding upstream 266194 2268384 ~ 2268596 (+)
G1509 NA non-coding downstream 50114 2591137 ~ 2595445 (+)
CI01000000_02639274_02651177 DDX41 non-coding downstream 109742 2639274 ~ 2651578 (+)
G1604 NA non-coding downstream 158651 2699674 ~ 2699896 (+)
G1617 NA non-coding downstream 221318 2762341 ~ 2762558 (+)
G1645 NA non-coding downstream 287348 2828371 ~ 2828613 (+)
G579 NA other upstream 625982 1767917 ~ 1908808 (+)
G435 NA other upstream 1101936 1425121 ~ 1432854 (+)
G350 NA other upstream 1857853 671842 ~ 676937 (+)
G252 NA other upstream 2027718 503209 ~ 507072 (+)
G2774 NA other downstream 1912755 4453778 ~ 4454232 (+)
G2850 NA other downstream 2184963 4725986 ~ 4726482 (+)
G6811 NA other downstream 7663808 10204831 ~ 10321679 (+)
G6820 NA other downstream 7886200 10427223 ~ 10433018 (+)
G7018 NA other downstream 8437466 10978489 ~ 10980872 (+)

Expression


Co-expression Network