sp9 (sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462)


Basic Information

Item Value
gene id sp9
gene name sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4109650 ~ 4112225 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248594.1
GCTCACTATACAACTCGAGTAGAGAGAGTAAAGCTTCAGCGCACTGTCCCTCAGTCACACCGGAACACTGAGTCATTGTTCTCTTCAACTAGCTGTCTAGGAAAGGCCCTGGATATGGCTACGTCTATACTTGGGGAAGAGCCTCGGTTTGGAACTACCCCTTTAGCGATGCTGGCCGCAACCTGCAACAAAATCGGCAACACCAGTCCCCTCACGACTCTCCCCGACTCCAGCGCGTTTTCCAAAGGCGGATTTCATCCCTGGAAGAGATCGTCGTCGAGCTGCAACCTAGGCTCCAGCCTGCCCGGATTCACCGTCGCCACCAGCCGCAGCACCTCGGGACTAACGACCAGCACCGGCTCGGCGAACAGCGCGTTCTGCCTGGCCTCCACCTCGCCGACCTCCTCCGCGTTCTCCGCCGAGTACAGCAGCTTGTTCTCCAACACGGCGAGCGTTTCCTCGCAGGAGTCAGGACAGTCCGCCTTCATTTCCAAAGTGCACTCGTCCGCGGAGAGCCTATACCCGCGGGTCGGCATGGCGCACCCGTACGAATCGTGGTACAAGTCCGGCTTTCACTCCACCATCTCCGGCGAGGTGGCCAACGGCGCGTCGACGTGGTGGGACGTGCACACGAACCCGGGCTCGTGGCTCGAGGTGCAGAACCCGGCCGGCAGTTTGCAAAGTTCCCTGCACTCCGGAACCCCCCAAGCCATCCACTCGCAGCTCAGCGGCTACAACCCGGACTTCTCGAGCCTCACGCACTCCGCGTTCAGCTCCACCGGCATCAGCCCCACCGCGTCCCACCTCCTGTCCACCAGCCAGCACCTGTTGACGCAGGAGGGCTTCAAAACTGTGATCCCCACGTACACCGACGCGTCGGCCACAAACGCCATGATCTCCGGCGCCAGCTCGGGCATAGGGACCTCTTCCAGGTCCTCCAGGAGATACTCCGGGCGCGCCACGTGCGACTGCCCGAACTGCCAAGAGGCGGAGCGGCTGGGGCCCGCGGGGGCCAGCCTGCGGAGGAAAGGACTCCATAGCTGTCACATCCCGGGCTGCGGTAAAGTCTACGGGAAAACGTCTCACCTCAAAGCGCACCTGAGGTGGCACACCGGCGAGAGGCCCTTTGTGTGCAACTGGCTTTTTTGCGGCAAACGGTTCACCAGGTCAGACGAGCTCCAGAGGCACCTGCGCACTCACACCGGCGAGAAGCGGTTCGCGTGCCCGGTGTGCAACAAGCGCTTCATGAGGAGCGACCACCTGAGCAAACACATCAAAACGCACACCGCCGGAGGCGGAGGCAAAAAGGGCAGCGACAGTGACACCGACACCAGCAACCTGGAGACGCCCAGGTCCGAGTCGCCCGAACTGATTTTAGAGGGCGTAAACCCACGGGTCACGGTCAAAGATCAGTCTCCGCACCACGAGTCCTGAGCTCGACCTCGAAGGCGTTTTCCTCTTTTAGGCGAATCGAGAAAAAGAAACGGGTCTGGAGTACGCGACGAAACTCTTGACATTGCATTGGAACGAGCACTTTCAGTGCAACACTGGCTATTTCCGCCGCGCGCGGCCACAGACGAACGCTTTTTGCTCAGCTTTCAGGACGATGAGGTCCGGTCGAGGCTCAGCGCTTTTAACAGCGGATGGACATTTGCCGCGGAACCGCTGCGGGAACTATAAATAACCGCGGCTGCCGGTTGAGCTAATTGTGTACATATAATCCACAAAAAATAACCTGTTATTTTTTCCCCTGTAAATGTTACTTATGATCGTTTCGTGGTGGATCCTGAAATTCAGGgaattttcttttcctttcgaCGCACTTTGTGGATGTCAGTATGTATGTTACACAgctatttaaaattcatttaaccTTTCCTTTACCTTGctaagaatatataaatgtctaATTGTACAAAGTCACGCTTATAAGgctttcattttgtaattaaagGGATTTAAA

Function

symbol description
sp9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including median fin fold; neural tube; pectoral fin bud; presumptive median fin fold; and tail bud. Orthologous to human SP9 (Sp9 transcription factor).

NR:

description
transcription factor Sp9

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09199 SP9; transcription factor Sp9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248594.1 True 1963 mRNA 0.57 2 4109650 4112225

Neighbor

gene id symbol gene type direction distance location
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding upstream 128439 3948018 ~ 3981211 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding upstream 164042 3925891 ~ 3945608 (+)
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding upstream 198830 3906741 ~ 3910820 (+)
stx19 stx19,LOC107664001,LOC107749033,LOC107728237 coding upstream 342113 3760833 ~ 3767537 (+)
rsph1 rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994 coding upstream 350435 3754816 ~ 3759215 (+)
hoxd13a NA coding downstream 269299 4381524 ~ 4382885 (+)
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding downstream 273214 4385439 ~ 4387003 (+)
hoxd11a hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752 coding downstream 277423 4389648 ~ 4392011 (+)
hoxd10a hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206 coding downstream 282491 4394716 ~ 4397578 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding downstream 286498 4398723 ~ 4401072 (+)
G67606 NA non-coding upstream 44689 4064637 ~ 4064961 (+)
G67604 NA non-coding upstream 70828 4038596 ~ 4038822 (+)
G67562 LOC107588232,LOC107742953,LOC107671312,LOC107657349 non-coding upstream 77830 3946534 ~ 4031820 (+)
G67448 NA non-coding upstream 279878 3828823 ~ 3829772 (+)
LOC122351161 NA non-coding upstream 463036 3642961 ~ 3646614 (+)
G67637 NA non-coding downstream 44431 4156656 ~ 4157963 (+)
G67641 NA non-coding downstream 50131 4162356 ~ 4165072 (+)
G67657 NA non-coding downstream 95465 4207690 ~ 4208541 (+)
G67680 NA non-coding downstream 239476 4351701 ~ 4404210 (+)
G67684 NA non-coding downstream 242780 4355005 ~ 4356813 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 123688 3981346 ~ 3985962 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other upstream 126068 3948036 ~ 3983582 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other upstream 186772 3913638 ~ 3922878 (+)
LOC122351398 dnajc15,LOC107549910 other upstream 829598 3262607 ~ 3280052 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other upstream 913032 3194773 ~ 3196618 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other downstream 8302 4120527 ~ 4127013 (+)
G67630 NA other downstream 28829 4141054 ~ 4222171 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 297670 4409895 ~ 4413160 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other downstream 411061 4523286 ~ 4562602 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 596828 4709053 ~ 4717233 (+)

Expression


Co-expression Network