uxs1 (uxs1,LOC107688726,LOC107676432,LOC107551074)


Basic Information

Item Value
gene id uxs1
gene name uxs1,LOC107688726,LOC107676432,LOC107551074
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6842578 ~ 6880028 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248631.1
ACGCACATAAAAACACACCGATAAACCGTGTGCCtttttacattcatacatacCAGCAATTTCAATATAGAAATGCTCACACGAGCTCGTCGGGCGGTTTGCATctatttgaaaagaaaacaaaagagctTTACTTTCTTGCTATCGCGGCAGGATGCTTAATCGATAACAGAAAACATCGCTTATGTTATCTTGCTACGACTAACGTTATCTGATGCGGAGCTGCTTTATTGCTCTGTCGCGGAACTCTTGATTAATGGCATCGGATCATCCGTAAACCTCGATCATTGGATAAGTCACAGGATAAGTCCGAGGATTTGAACAGACTTCCGTGATATTGCGCCATATTACATTAGTTTGTTAGTTAGCACCTCTAGCTGCAGCTCTACAGTCATGACGCTACATGGCTAACTGACCATAATGCCAAACCAAAATGCCGTTTTACTTTCTTTAAACGGGAACCTGGATGCACCAGGACGCTCGCCGAACACAAACACGCCGGGCTGCCTAAACCGTCAGACATTGTTTTGACGCAGAAATCGTTTTGAGAAGAAGTTAGCCTGGTTAGCTTCGGGCAGGCGCTCGCGCTCTTACTTCGCACACGGCAACAACTTTTGTGTTTCAGCTTATAATTGAGTTTCCGTGTGTGTTTGGATACCGGTGCCGTGTTCTGTCGGTAAGGAGCGGGCTCGTGTGAGCGTGTGATAGACGCTGAAGAGAGATGCAGCGGTGGTGAGGAAGAGCTCAATGCCGTGTGTGCTGGAGGATGATGCGGATGAGCTGGATGATCACAGTCATTAACAGAAGAATGATGAAGATCCTGATCGCCCTCGCTCTCGTTGCCTACATCGCCTctgTCTGGGGAACCTACGCAAATATGAGGTCTATACAGGAACACGGAGAAATGAAGGTTGAGCAGAGGATAGATGAGGCTGTGGCACCTCTCAGGGAGAAGATACGAGAACTTGAGCTTagttttacccAGAAGTACCCACCTGTGAAATTCTTATCTGAGAAGGACCGAAAGAGGATTTTGATCACTGGTGGGGCAGGATTCGTGGGCTCGCACCTCACTGATAAGCTTATGATGGATGGTCACGAAGTGACGGTGGTGGATAATTTCTTCACTGGCCGCAAGCGCAATGTAGAGCACTGGATTGGCCATGAAAACTTCGAGCTGATCAACCATGATGTAGTGGAGCCTCTTTATATCGAAGTTGACCAGATATACCATTTGGCTTCGCCTGCATCGCCACCCAACTACATGTATAACCCCATCAAGACACTGAAAACTAATACTATTGGTACTCTCAACATGTTGGGATTGGCCAAGCGAGTCGGAGCTCGTTTGCTCCTCGCCTCCACTTCAGAAGTGTATGGAGACCCAGAGGTGCACCCCCAGAATGAGGACTACTGGGGTCATGTGAACCCTATTGGCCCCCGGGCCTGTTATGATGAAGGGAAACGTGTTGCGGAGACAATGTGTTACGCCTACATGAAACAGGAAGGAGTAGAGGTGAGAGTGGCTCGGATCTTCAACACCTTCGGCTCTCGCATGCACATGAATGATGGGAGAGTGGTCAGCAATTTCATTCTGCAGGCTTTACAAGGAGAGCCGCTGACGGTTTATGGTTCAGGTTCTCAGACGAGAGCTTTCCAGTATGTGAGTGATCTGGTGAATGGGCTGGTGTCCCTGATGAACAGTAACATCAGTAGTCCGGTTAACCTGGGCAATCCAGAGGAACACACTATACTAGAGTTTGCACAGCTTATTAAGAGTCTAGTTGTGAGCCGCAGTCATATTCAGTTCCTTCCAGAAGCACAGGATGATCCACAGAGAAGACGGCCAGACATCCGCAAAGCCAAAATGCTTCTGGGCTGGGAACCTGTGgTGCCACTGGAGGAAGGCTTGAACAAAACCATCCAGTACTTCAGCAGAGAGCTGGAGCATCAGGCCAACAATCAGTATATACCCAAACCCAAAGCTGCACGGATGAAAAAAGGAAGACCCAGACACAACTGATGAATTGTGTGTTGATCTCAGGGATGCTGGGATACTGAAGGACCTTAGACGTCCAGCAGCCGTTTTACAGCGTGGGTTTCCCACCTCCCACTTTCAGATCCATCTTTTTGAGAaattttctgatgtttttcgcaaatgttttgaaaagcGGCTCAGGCAGAGAGCTGTCTCTAAAgagtttgtttttcagtcaAATGTGCCTCAAAGATATCCAATTTACAGACTTTGCCTTGCACTTTGGTTCGTCGGTCGTCTGTCTGTTATTTAAAGCAAGCTTAGATCttcatgtgcatttttttttgttgtgtgtttacATCCTGTGCCGTTTTAATTGATGTGATCTATTTTTTTATCGTCGTCAAAGCTAGCGGTGTGTTATTGCTCAACGGACACCTGTAGAAAATTATGGCAATTAACAGTTGCAAACTATTTAAAGAGCTCAAATGTCCGGTCTGGAGCAGGAAACCTCATCCAGCTCCGTCGAGAAATCTGGGGACGCAGATGAAAGAAAAGCTTTGGAAAATGTTCTTTCTGCTTTAAACTTTGTGATGATTTTGAGCAAAATCTGTTGTTACCTTTGTGAAACTTCATACAGAACTTTGAACCTATAATTGATTTCAggtgaaaataatattttaataaaatatttactgtga

Function

symbol description
uxs1 Predicted to enable NAD+ binding activity and UDP-glucuronate decarboxylase activity. Acts upstream of or within several processes, including cartilage development; extracellular matrix organization; and proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in several structures, including cartilage element; head; mesenchyme; perichondrium; and yolk syncytial layer. Orthologous to human UXS1 (UDP-glucuronate decarboxylase 1).

NR:

description
UDP-glucuronic acid decarboxylase 1

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0051216 cartilage development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0033320 UDP-D-xylose biosynthetic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0048040 UDP-glucuronate decarboxylase activity molecular_function

KEGG:

id description
K08678 UXS1, uxs; UDP-glucuronate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248631.1 True 2679 mRNA 0.46 15 6842578 6880028

Neighbor

gene id symbol gene type direction distance location
st6gal2a st6gal2a,LOC107721598,LOC107688722,LOC107676409,LOC107716800,LOC107602911,LOC107551073 coding upstream 29556 6763869 ~ 6813022 (+)
pdzk1 LOC107688772,LOC107721583,LOC107703056,LOC107551063,LOC107716762,LOC107602882 coding upstream 124781 6710206 ~ 6717797 (+)
irs2b irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 coding upstream 581489 6246813 ~ 6261089 (+)
LOC122351469 col4a1,LOC107557928,LOC107715912,LOC107688716,LOC107702910,LOC107721605 coding upstream 649348 6177073 ~ 6193230 (+)
LOC122351516 LOC107720938,LOC107752607,LOC107689504,LOC107549895,LOC107549742 coding upstream 812256 6005352 ~ 6030322 (+)
fhl2a fhl2a,fhl2,LOC107716797,LOC107676452,LOC107688730,LOC107721574,LOC108266723 coding downstream 76493 6956521 ~ 6964046 (+)
mfsd9 LOC107716769,LOC107688732,LOC107602885,LOC107551077,LOC107721579,LOC107676555 coding downstream 220401 7100429 ~ 7106362 (+)
inpp4aa inpp4a,inpp4aa,LOC107676472,LOC107688733,LOC107602877,LOC107721597 coding downstream 237518 7117546 ~ 7142648 (+)
LOC122351345 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding downstream 263091 7143119 ~ 7153966 (+)
LOC122351346 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding downstream 269903 7149931 ~ 7153764 (+)
G68254 NA non-coding upstream 134385 6707841 ~ 6708193 (+)
G68252 NA non-coding upstream 147667 6694678 ~ 6694911 (+)
G68251 LOC107551047,LOC107702999,LOC107716777,LOC107688771,LOC107602892,LOC100331465 non-coding upstream 150738 6691342 ~ 6691840 (+)
G68248 NA non-coding upstream 158082 6682624 ~ 6684496 (+)
G68247 NA non-coding upstream 168928 6673105 ~ 6673650 (+)
G68296 nck2a,nck2,LOC107688727,LOC107602910,LOC105022090,LOC107716798 non-coding downstream 27710 6907738 ~ 6943321 (+)
G68304 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 non-coding downstream 83127 6963155 ~ 6974701 (+)
G68309 NA non-coding downstream 111805 6991833 ~ 6995856 (+)
G68405 NA non-coding downstream 319241 7199269 ~ 7199817 (+)
G68401 NA non-coding downstream 376652 7256680 ~ 7259394 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 869455 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 956825 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 1385049 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 1385315 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 1385735 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 1461267 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 1551083 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 1580716 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 1983359 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 1987069 8867097 ~ 8871633 (+)

Expression


Co-expression Network