prkra (LOC107747227,LOC107670311,LOC107560808,LOC107561731,LOC107689486)


Basic Information

Item Value
gene id prkra
gene name LOC107747227,LOC107670311,LOC107560808,LOC107561731,LOC107689486
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4774995 ~ 4780677 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248641.1
GAAGAGGCTCTGGCgcagaaggcggggcttagcgCCAGTATTCTCGAATCCTATTGGCCAGCGTTCTTCCATCCACGCAGAAGCGGCATTCTCCAGCAATAATGGCCGAGTCTCAAGTCAGCATGGCTCATCAGCGCTGTCAGGATAAAACGCCCATCCAGATCCTGCACGAATACGGCATTAAAATCGGCAGCGCGCCTGTGTACGAGCTCCTCCAGGCCGACGGAGACACGCACCAGCCCTCCTTCATGTTCAGCGTCGCTATAGCAGACATCACGTGCAAAGGGCGAGGGTCCACTAAAAAGGCTGCTAAACATGAAGCTGCGGAAGCCGTTTTGAAATTACTGAAACGAGACACCCATCTAAATGATCAGAGAGATGGTATTTCTCCCGAAGCCGGTGACGCCTCCAATCCTGTGGGAGTCCTGCAGGAGCTGGCCATGCAGAGGGTGTGGTGTCTGCCGGAGTACGTGGTGTGTCTGGAGTCGGGGCCCGATCACATGAAGGAGTTCACCGTTACCTGCCGCCTGGAGGGACTGGAGGAGTCAGGCTCCGGCAGCTCCAAAAAACTGGCCAGACGCGCGGCGGCCGAACGCATGCTGGGGAAACTGCAGAGCCTGTCCGGATCTCCCGAGATCACGTGGAGCCCGCCGTCTCGCGTGTATGTGGAGAGCTTACGGCAGTCCATGGGGGAGAAGATATCCCTCCTGAGGAGGACGCCGCTCAGCATCCCGAACACGGACTACATTCAGATGCTGCTGGAGATCTCACTGGAGCTGGGCTTTCAGGTCACGTACATAGACATCGatGAGCTGACGGTGAACGGTCAGTACCAGTGTTTGGTGGAGCTGTCCACTCGGCCGGTGACGGTGTGTCACGGTACAGGGATGACCAGCAGTAACGCTCACAACACCGCAGCACATAACGCCCTGCAGTACATCAAGATGGTGGCCAGTAAACACTAACAGCAGCTCTGGGATCAGCGTGACCGTGCAACCAGTGGACACCTTCTGCTGTAAGAGACCCGACTCTATGCAGAAAATAAATCCTTTTCTGGGTTACCATGCTGAGTTCATTCTTGGATGCTACGAAGCACTACATCTGCAACCACTTCTGCAGTTAACCTCTAACTGGATTCAGTCAGATGTTTTTGTGAGCATTGATGAGCATCTGTTTTTGCTTCATGAATCCATTGTAAACACcatattaggttttttttttactttttgtaaatagCTTACACCGTAACAGTTGTAGTCGAGGCATACTCATGTGGTCAATATTTATATGGTGCTTTACACTCCTtttgaaatgaaactaaacTATTGTCTATGTTGGAAACGTTCTTCAGAACTAACAGCTCTCGTTTCATTTGGGAAACACTGCCTTTATAATGCTTCGCTTATTTACTGACCGTATTGATCgtgtatgaaaacatttatacacaatACGTTCACTTAGATACTCAATGTAACGTAAGGAGGATTTCTAAAAAGGTACAGtattacagtacttttttaatatattctgaATACGCATAGAAGTCAAGCAAGTCACGTTTATTTCTATAACGCTTTATACACTtcagattgtttcaaagcagagGTAACATTCAAGTCcggctgtaaagcagctctaacAATCCAGGCCTTTCACAGATCAAGTTCAGTTCAATAACCTTAACATGTATAAATCTGCGCTCATACACTGTATATGCAGTGTGTTTTTTCCCATGATCACACACGTTTGAGTTCTACGACTAACTCCAATGCACACTGAACAAGCAAAACGTGCAAGAATACCAGTTTTGAATCGTTTCGAGAGGCGTTTTATTTGATGTGATATACGCTAAAGGTTTCCCACGTTTTGTGGGCAGGTGTGTATAAGTTTGCAAAAATGaacagcagtttaaaaaaaagatgtagttcattatttaaagcttttcaGTGCGGTGTCCTGGGTTGCCATGTGGTGGTTGGTCACAGGGTTTTCGGGGTGAACCAATGAACCGAACATTGCATGTCATAGATTATCTACTTTTGGCAAAAAAACGAATCAAACTGTGATATAATGCATgcgagttgttttttttcctccctgaGCTTCACTACACGCTATGCCCTCTGCCCTATGTCTGTCTGAGGAGCTCAATCCAAGACTCATGTCACGAAACAGGCACGATCTGAGTCCCTCTGACCTTTTTAAGTTCATGTTATTTATTGGGTCACTAAAAGCTTTTTGTatgaattgaatttgaaatgtctcctttcaaaaacatgttacAAATCATCTTATTTTCTGTCGATGCCGCCTGTTTTGTCATGTCCCTCATGGTCTTCTATGAAAGAAGggatatgaataataaaattagaaaaagtc

Function

NR:

description
interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog

GO:

id name namespace
GO:0030422 production of siRNA involved in RNA interference biological_process
GO:0016310 phosphorylation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K24540 PRKRA; interferon-inducible double-stranded RNA-dependent protein kinase activator A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248641.1 True 2379 mRNA 0.46 8 4774995 4780677

Neighbor

gene id symbol gene type direction distance location
nfe2l2a nfe2l2a,LOC107716922,LOC107725823,LOC107671308,LOC107657385 coding downstream 203879 4557126 ~ 4571116 (-)
evx2 evx2,evx2a,LOC107657379,LOC107671304 coding downstream 403404 4367160 ~ 4371591 (-)
lnpa lnpk,lnpa,LOC107742983,LOC107657390,LOC107725829,LOC107600748,LOC107671324,LOC107588227 coding downstream 413026 4351702 ~ 4361969 (-)
atp5mc3a atp5g3a,atp5g3,LOC108424356,LOC107739460,LOC108266717 coding downstream 552728 4218896 ~ 4222267 (-)
atf2 atf2,LOC107671311,LOC107739459,LOC107657392,LOC107742976,LOC107600703 coding downstream 556501 4197917 ~ 4218494 (-)
casp10 LOC107560797,LOC107561720 coding upstream 1023 4781700 ~ 4791739 (-)
stk24a stk24a,LOC107560805,LOC107747230,LOC107670316,LOC107561729,LOC107689524,LOC107752612,LOC107705591,LOC103357793 coding upstream 72272 4852949 ~ 4859666 (-)
slc15a1a LOC107752613,LOC107689491 coding upstream 80215 4860892 ~ 4869233 (-)
zmp:0000001200 dock9,LOC107689489 coding upstream 89515 4870192 ~ 4921556 (-)
LOC122351620 rap2a,LOC100332969,LOC103043765,LOC107549783,LOC103391592,LOC105907999,LOC106512668,LOC106582448 coding upstream 196982 4977659 ~ 4985596 (-)
G67747 NA non-coding downstream 138653 4636010 ~ 4636342 (-)
G67730 NA non-coding downstream 219245 4552424 ~ 4555750 (-)
G67733 NA non-coding downstream 223120 4551237 ~ 4551875 (-)
G67712 NA non-coding downstream 347349 4427288 ~ 4427646 (-)
G67710 NA non-coding downstream 350697 4423977 ~ 4424298 (-)
G67847 NA non-coding upstream 163926 4944603 ~ 4954082 (-)
G67904 NA non-coding upstream 224617 5005294 ~ 5006781 (-)
G67911 NA non-coding upstream 246367 5027044 ~ 5027597 (-)
G67913 NA non-coding upstream 269752 5050429 ~ 5051292 (-)
G67923 NA non-coding upstream 308505 5089182 ~ 5089393 (-)
pde11a pde11a,LOC107657382,LOC107671328 other downstream 108341 4615842 ~ 4666654 (-)
wipf1a LOC107657348,LOC107600727 other downstream 624756 4142290 ~ 4150239 (-)
G67668 NA other downstream 652892 4120463 ~ 4122103 (-)
dgkh dgkh,LOC107713732,LOC107549907 other downstream 1267703 3437756 ~ 3507292 (-)
G67358 gpx4a other downstream 1580503 3189847 ~ 3194492 (-)
LOC122351499 LOC107670334,LOC107747232 other upstream 11747 4792424 ~ 4822965 (-)
LOC122351456 LOC107747234,LOC107560802,LOC107670305,LOC107752600,LOC107689492,LOC107549748,LOC101883674 other upstream 75973 4856650 ~ 4973955 (-)
G67863 farp1,LOC107747234,LOC107670305,LOC107689492,LOC107752600,LOC107549748,LOC101883674 other upstream 179040 4959717 ~ 4983747 (-)
dbi dbi,LOC107560815,LOC107747240,LOC107752581 other upstream 229836 5010513 ~ 5014813 (-)
G67912 NA other upstream 248249 5028926 ~ 5029475 (-)

Expression


Co-expression Network