cerkl (cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088)


Basic Information

Item Value
gene id cerkl
gene name cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22171463 ~ 22223667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248643.1
AAAGCCCAGCGGGCGCGCGCGCTTTAGAGGTGCATGGAGACGAGGAACTTCCTCAAGAGCCTAGCGACCGAGAGTTGGTAAATTAATACACGAGGGCGAGTTTACCCCGCAAGCTTTGACATTATGTTCGAATCCCCGTGTAAATCGATAAACGTCCTCGACGCGTGGTCGGAGAGCCAGGAAGAGTTGCGCGAGACGCAACCGGTGTCTCCTCGCGGGACGAGAAAGCGAGTCAAGGCGAAAAAGAAAAAGCGAAAACAGCAGCAGGACGAGAAACGCTCCGTCTCGGCCCCTCAGCTGTGCACGGACGACGCCGATAAGGGCCGAGCAGAAAAGAAACACAGACCGGACGAACCGATCGTGAGAGGAATTTTTCAAATCGGGAAGAAGAGCCACGACGTGGTTCTCACGGAAACGCGGGTAACATGGACGCCCATTCAGCCCGAGACCCCTACAGCTGACCGTGATGTGAAGAAGCAGGAAGAGTATGTTGAGCTTAAGGACGTGTTTGCTGTGAAGGTAAAGCGGCGGCGCTCTGCGGGGCAGCAGACGGGTGGAACTCTGCTGGGCATCACACTCTTCCAGTGCAAGAAGAAAGGGCTCAAACTCAAGGAACATGCCATCCACCTCAACAACCTCAGCGCAGACCACTGTGAGATTTGGTTCAAGAACCTCAAAGAGATCCTCCGTGGTTTTAAGAACCGTCCCAAGTGTCTCAAAGTCTTCGTGAACCCCATCAGCCACAAGAAAGAGGCTTACCAGCTCTACCTGGACGAAGTTGCCCCGCTCTTCAAGCTGGCTGACATAGAAGCCGATGTGACCATCACCAAGAGAAAGGGCCATGCACTGTCCATTCTGAAAGACTGCAGCTTGGAAGACTACGACGGTGTGGTATGTGTTGGGGGAGATGGCTCTGTAGCTGAGGTGGCCCACGGGTTGCTTCTCCGGGCCCAGATGGACGCTGGGAGGGACACAGATTCCATCTTCACGCCTGTCCAAGCAGCACTTCCTCTCGGCATAATACCAGCAGGTTCTACTGATGTGGTGGCCTGCTCCGTGTATGGAATAAGACGCGCCGTGACTGCAGCCTTGCACATCATCATGGGTCATCATCAGCCCGTGGACGTGTGTAGCTTTAGCTCTATGGGTCGCCTTCTGAGGTTCGGCTTCTCTGCCATGTTTGGTTTCGGTGGGCGGACGCTCGCACTGGCAGAGAGACACCGCTGGATGCCACCCAGCCAGCGCCGAGAGTTCGCTCTCATTAAAACACTGGCAAACCTCAAACCTGAAGAGTGCGAACTGTCCTTTGTAACCAGCAGAGGAGCCGAGGATCAGACAAAAGCTGAGCGAAATGGAGATGGAGGAATTTGTGTGGATGGATCCTGGCAGACCAGACAAGGCCTTTTCCTGAATGTCAGCATCATGGCTATTCCCTGTCTGTGCTCAATGGCCCCCAGGGGCCTGGCCCCAAACACCAGGTTAAGCAACGGCAGTATGGCGCTGATAGCTGTCGGAAACACCTCCAGGTCAGAGTTCATCAAGCACTTGAAGAGATACAGCAGCACAAACAACCAGTTTGGATTCTCGTTTATCGAGACGCACGCCGTGAAAACTGTGAAACTGCGGCCACGCTCTCAGGGAAGCTGGGCTGACGACGTCTCAGAGGAGAACGAGGAGTGCGATTCAAAAACTGTGCCCATCATCTCCTCTGAAGGAACGTACCCCTGGAACATTGACGGAGATCTCTTGGAGGTCCCATCTGAACTGCTAATAAgAGTTCACCCGCAGCTCCTCACACTCTTTGGAACAGACACGGAGGAGGCGGAGGAGGCGCCGGTTAAATGCAGCTgtatctgaacacacacaaccACATTAAAGAGAGGCTGTGCTAGATAGTAGATCTACGAGAAACTGAAAGAACAAACCACACAGAGCAAagctttaacatttttacacaacATTTTATGATGAAGCACAAACATGTGACACATAGTAGATTCCAGTGCATAAAAGCTTAAATTAAAccaatgtaattgtttttttgttttgttttgttgggttttttttacaaaaatttgtagcatttttaaagacaggcaataaaataaaaacattaacttattcaaaatactgataaaaaaaaaactaacaaaaaaacccaatgtCCTTTTTTGTGCACTATTCCCTGAACTGTAGACTTGtttttccttgttttctttactctttgtaaattttatataaaaagcactGACAAGCAACCCATCCGAAAgataaa
>XR_006251764.1
GAAAGCCCAGCGGGCGCGCGCGCTTTAGAGGTGCATGGAGACGAGGAACTTCCTCAAGAGCCTAGCGACCGAGAGTTGGTAAATTAATACACGAGGGCGAGTTTACCCCGCAAGCTTTGACATTATGTTCGAATCCCCGTGTAAATCGATAAACGTCCTCGACGCGTGGTCGGAGAGCCAGGAAGAGTTGCGCGAGACGCAACCGGTGTCTCCTCGCGGGACGAGAAAGCGAGTCAAGGCGAAAAAGAAAAAGCGAAAACAGCAGCAGGACGAGAAACGCTCCGTCTCGGCCCCTCAGCTGTGCACGGACGACGCCGATAAGGGCCGAGCAGAAAAGAAACACAGACCGGACGAACCGATCGTGAGAGGAATTTTTCAAATCGGGAAGAAGAGCCACGACGTGGTTCTCACGGAAACGCGGGTAACATGGACGCCCATTCAGCCCGAGACCCCTACAGCTGACCGTGATGTGAAGAAGCAGGAAGAGTATGTTGAGCTTAAGGACGTGTTTGCTGTGAAGGTAAAGCGGCGGCGCTCTGCGGGGCAGCAGACGGGTGGAACTCTGCTGGGCATCACACTCTTCCAGTGCAAGAAGAAAGGGCTCAAACTCAAGGAACATGCCATCCACCTCAACAACCTCAGCGCAGACCACTGTGAGATTTGGTTCAAGAACCTCAAAGAGATCCTCCGTGGTTTTAAGAACCGTCCCAAGTGTCTCAAAGTCTTCGTGAACCCCATCAGCCACAAGAAAGAGGCTTACCAGCTCTACCTGGACGAAGTTGCCCCGCTCTTCAAGCTGGCTGACATAGAAGCCGATGTGACCATCACCAAGAGAAAGGGCCATGCACTGTCCATTCTGAAAGACTGCAGCTTGGAAGACTACGACGGTGTGGTATGTGTTGGGGGAGATGGCTCTGTAGCTGAGGTGGCCCACGGGTTGCTTCTCCGGGCCCAGATGGACGCTGGGAGGGACACAGATTCCATCTTCACGCCTGTCCAAGCAGCACTTCCTCTCGGCATAATACCAGCAGGTTCTACTGATGTGGTGGCCTGCTCCGTGTATGGAATAAGACGCGCCGTGACTGCAGCCTTGCACATCATCATGGGTCATCATCAGCCCGTGGACGTGTGTAGCTTTAGCTCTATGGGTCGCCTTCTGAGGTTCGGCTTCTCTGCCATGTTTGGTTTCGGTGGGCGGACGCTCGCACTGGCAGAGAGACACCGCTGGATGCCACCCAGCCAGCGCCGAGAGTTCGCTCTCATTAAAACACTGGCAAACCTCAAACCTGAAGAGTGCGAACTGTCCTTTGTAACCAGCAGAGGAGCCGAGGATCAGACAAAGTGTGGATGGATCCTGGCAGACCAGACAAGGCCTTTTCCTGAATGTCAGCATCATGGCTATTCCCTGTCTGTGCTCAATGGCCCCCAGGGGCCTGGCCCCAAACACCAGGTTAAGCAACGGCAGTATGGCGCTGATAGCTGTCGGAAACACCTCCAGGTCAGAGTTCATCAAGCACTTGAAGAGATACAGCAGCACAAACAACCAGTTTGGATTCTCGTTTATCGAGACGCACGCCGTGAAAACTGTGAAACTGCGGCCACGCTCTCAGGGAAGCTGGGCTGACGACGTCTCAGAGGAGAACGAGGAGTGCGATTCAAAAACTGTGCCCATCATCTCCTCTGAAGGAACGTACCCCTGGAACATTGACGGAGATCTCTTGGAGGTCCCATCTGAACTGCTAATAAgAGTTCACCCGCAGCTCCTCACACTCTTTGGAACAGACACGGAGGAGGCGGAGGAGGCGCCGGTTAAATGCAGCTgtatctgaacacacacaaccACATTAAAGAGAGGCTGTGCTAGATAGTAGATCTACGAGAAACTGAAAGAACAAACCACACAGAGCAAagctttaacatttttacacaacATTTTATGATGAAGCACAAACATGTGACACATAGTAGATTCCAGTGCATAAAAGCTTAAATTAAAccaatgtaattgtttttttgttttgttttgttgggttttttttacaaaaatttgtagcatttttaaagacaggcaataaaataaaaacattaacttattcaaaatactgataaaaaaaaaactaacaaaaaaacccaatgtCCTTTTTTGTGCACTATTCCCTGAACTGTAGACTTGtttttccttgttttctttactctttgtaaattttatataaaaagcactGACAAGCAACCCATCCGAAAgataaa

Function

symbol description
cerkl Predicted to enable lipid kinase activity. Acts upstream of or within several processes, including negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway; regulation of apoptotic cell clearance; and retina layer formation. Located in cytosol and nucleus. Is expressed in several structures, including eye; gill; heart; kidney; and optic cup. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 26. Orthologous to human CERKL (ceramide kinase like).

NR:

description
integrin alpha-4-like

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0042461 photoreceptor cell development biological_process
GO:0010842 retina layer formation biological_process
GO:0005829 cytosol cellular_component
GO:0005730 nucleolus cellular_component
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG:

id description
K19602 CERKL; ceramide kinase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248643.1 True 2275 mRNA 0.50 13 22171463 22223666
XR_006251764.1 False 2247 transcript 0.50 12 22171463 22223667

Neighbor

gene id symbol gene type direction distance location
LOC122351744 ube2e3,LOC107601610 coding downstream 263750 21897185 ~ 21907713 (-)
LOC122351560 ttn,LOC107657509,LOC107714399,LOC108435065 coding downstream 275416 21744043 ~ 21896047 (-)
LOC122351741 LOC107704498,LOC107549376 coding downstream 1000688 21168939 ~ 21170775 (-)
LOC122351738 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107601612,LOC107716993,LOC107562704 coding downstream 1400310 20769745 ~ 20771153 (-)
LOC122351733 ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612 coding downstream 1410436 20760046 ~ 20761027 (-)
neurod1 neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620 coding upstream 1891 22225558 ~ 22228499 (-)
LOC122352034 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264 coding upstream 117741 22341408 ~ 22398653 (-)
LOC122351832 NA coding upstream 258559 22482226 ~ 22484709 (-)
dusp19a dusp19a,dusp19,LOC107739447,LOC107699004,LOC107601374,LOC107601606,LOC107755360,LOC106586411 coding upstream 314308 22537975 ~ 22541710 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding upstream 374161 22597828 ~ 22610069 (-)
G72500 NA non-coding downstream 48055 22123190 ~ 22123408 (-)
G72493 NA non-coding downstream 71225 22100026 ~ 22100238 (-)
G72472 NA non-coding downstream 114628 21995935 ~ 22056835 (-)
G72479 NA non-coding downstream 228473 21942567 ~ 21942990 (-)
G72474 NA non-coding downstream 264078 21906999 ~ 21907385 (-)
G72502 ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093 non-coding upstream 63107 22286774 ~ 22295068 (-)
G72537 pde1a,LOC108443795,LOC107716994,LOC107699023 non-coding upstream 83515 22307182 ~ 22310478 (-)
G72535 NA non-coding upstream 87411 22311078 ~ 22458758 (-)
G72583 NA non-coding upstream 356136 22579803 ~ 22580772 (-)
LOC122352087 NA non-coding upstream 362077 22585744 ~ 22588251 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 444643 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 1667573 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 2278148 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 2318838 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 2341988 19796252 ~ 19829475 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 73340 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1706540 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1720318 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 1996855 24220522 ~ 24280708 (-)
G73201 NA other upstream 2803918 25027585 ~ 25030965 (-)

Expression


Co-expression Network