neurod1 (neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620)


Basic Information

Item Value
gene id neurod1
gene name neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22225558 ~ 22228499 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248644.1
CAGACATCCGCTCGCATCTCCCAGCATCAGCAGCACCGCTATATAACCAGAGCATCCCATCGGCGCAGCCACATTAGGCTTCAATCCGCAGGACTTCCCACACGACACCACGAGGGGCATGAAACTATCATAACGAGACATTCAACAAATCCCAGAGTTCCAACATGACGAAATCTTACACCGAGGAAAGCATGATGCTGGATTCTCAAACCAGCACGAACTGGACCGACAAGTGTCACAGCAGCTCCCAAGACGAGCGAGACCTGGAGAACTCCAGCGTGCCCATGCACAAGGATATGGAAGACGACGAGGTGGGACTCAACCGACTCGAAGACGAGGacgatgaggaggaggaggaggaggaagaggacggCGATGACACCAAGCCGAAAAGACGGGGacccaagaagaagaagatgaccAAGGCGCGTCTGCAGAGGTTCAAGATGAGGCGCATGAAGGCGAACGCCCGGGAGAGGAACCGCATGCACGGCCTCAACGACGCGCTCGAGAGCCTGCGCAAAGTTGTGCCGTGCTACTCCAAAACGCAGAAGCTCTCCAAGATCGAAACGCTCCGACTGGCCAAGAACTACATTTGGGCTCTTTCGGAGATCCTGAGGTCGGGCAAGAGCCCGGATCTGATGTCTTTCGTGCAGGCCCTGTGCAAGGGCTTGTCCCAGCCCACGACCAACTTGGTCGCGGGCTGCCTCCAGCTGAACCCCAGAACTTTTCTCCCCGAGCAGAGCCAGGAGATGCCCCCTCATATGCAAACAGCAAGTGCTTCCTTTTCCGCGCTTCCCTACTCCTACCAGACGCCCGGTCTTCCCAGCCCTCCGTACGGTACGATGGACAGCTCTCACATCTTTCACGTCAAGCCGCACGCTTACGGGAGCGCGCTGGAGCCGTTCTTTGAcaccgcgctcacagactgcaCCAGCCCCTCGTTTGACGGACCGCTTAGCCCGCCTTTGAGCGTCAACGGGAACTTTTCCTTCAAACACGAGCCTTCGTCGGAATTCGAGAAGAACTACGCCTTTACCATGCACTATCAGGCGGCGGGCTTGGCCGGCGCGCAGGGACACGCGTCTCTTTACGCGGGCTCCGCGCAGCGCTGTGATATACCCATGGAGAACATTATGTCGTACGAAGGGCACTCGCATCACGAGCGGGTCATGAACGCCCAGCTCAACGCGATATTTCACGACTCGTGATTCTAACGGACATTTGCGAGACTGCTCGACGCGGTATTCTGTTATGGCTGATGCAAAAAGAGCAACAACATTATATGCTTAATCTTATGTACGTATTTATTGTTGTTACTGCCTTTAGGAGAAGAGAGGATTCGTTGGTTCTCGTTCACCTTATGTATTGTATTCTATAGCGCTTCTACGTCGCGGTCACACACAGGTGGGAACAGGCGTGACCTTCTTCAGAATGTGTTAATTATCCATGCTACAAAATCACAAGCAATAATTTGGAATCTATGCAATTTTTAATCCAATACTGGGCcaattatagaaattaatagAGATCGATATATTTTTCAACCTATTACATTTTACTACTTATCTATCCCATACTGAATTATTTTGTTGTGGTTTTGTATagaattgttaatttttataaagTCGGATCCCTTGCGTCATTCCATGCAACCCctcatgttaatgttttataaaactgATTTATCTCTTGTTTATACAGAACAGTACTCAATCTAGTAATAACCAGCAGGCAAGTGCTTAAAAATCTGTAATGTTGCCTTAGCAATGAATTACTGTAAAATCATGCAGAGTTGCACAATTCCCATCCTCCGAATCCCGTCTAACGTTACGTTCAATCAGTGATCCTTTGCGGAAATGCGAATTGCTTGAGTGCTATGTGTgtggggtggggtgggggggACAAAAAATTCGGTGTTAGAGTCTCAGTGTTGTACATAAAAGCTTGACTATCACCTTTTAAATTCACCCTGCGTAAAAGCCGATGGAGAGGCCCGTCTCTCTAAGACGGAGAATAAGTCACGGACTGAATTAGTCTGCTCTAACCAATTTGGGTATTTTCGAATTGGTCGCGAAGAAGGGACGAACAATGAAGGTACAACCAAAAAGGTTGATTTTAAAGTGATTCTAGTTTTGAGActgttgtatgtgtgtatcgGTTCATGATGGAggtttaagaaataaaacaaacggtTTTGAATTGAA

Function

symbol description
neurod1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including endocrine pancreas development; negative regulation of Notch signaling pathway; and neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; nervous system; neural plate; neurogenic placode; and pancreatic system. Human ortholog(s) of this gene implicated in glucose intolerance; hyperglycemia; maturity-onset diabetes of the young type 6; type 1 diabetes mellitus; and type 2 diabetes mellitus. Orthologous to human NEUROD1 (neuronal differentiation 1).

NR:

description
neurogenic differentiation factor 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048923 posterior lateral line neuromast hair cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K08033 NEUROD1; neurogenic differentiation factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248644.1 True 2207 mRNA 0.49 2 22225558 22228499

Neighbor

gene id symbol gene type direction distance location
LOC122351744 ube2e3,LOC107601610 coding downstream 317845 21897185 ~ 21907713 (-)
LOC122351560 ttn,LOC107657509,LOC107714399,LOC108435065 coding downstream 329511 21744043 ~ 21896047 (-)
LOC122351741 LOC107704498,LOC107549376 coding downstream 1054783 21168939 ~ 21170775 (-)
LOC122351738 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107601612,LOC107716993,LOC107562704 coding downstream 1454405 20769745 ~ 20771153 (-)
LOC122351733 ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612 coding downstream 1464531 20760046 ~ 20761027 (-)
LOC122352034 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264 coding upstream 112909 22341408 ~ 22398653 (-)
LOC122351832 NA coding upstream 253727 22482226 ~ 22484709 (-)
dusp19a dusp19a,dusp19,LOC107739447,LOC107699004,LOC107601374,LOC107601606,LOC107755360,LOC106586411 coding upstream 309476 22537975 ~ 22541710 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding upstream 369329 22597828 ~ 22610069 (-)
LOC122351760 LOC107755372 coding upstream 382859 22611358 ~ 22615781 (-)
G72500 NA non-coding downstream 102150 22123190 ~ 22123408 (-)
G72493 NA non-coding downstream 125320 22100026 ~ 22100238 (-)
G72472 NA non-coding downstream 168723 21995935 ~ 22056835 (-)
G72479 NA non-coding downstream 282568 21942567 ~ 21942990 (-)
G72474 NA non-coding downstream 318173 21906999 ~ 21907385 (-)
G72502 ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093 non-coding upstream 58275 22286774 ~ 22295068 (-)
G72537 pde1a,LOC108443795,LOC107716994,LOC107699023 non-coding upstream 78683 22307182 ~ 22310478 (-)
G72535 NA non-coding upstream 82579 22311078 ~ 22458758 (-)
G72583 NA non-coding upstream 351304 22579803 ~ 22580772 (-)
LOC122352087 NA non-coding upstream 357245 22585744 ~ 22588251 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 1891 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 498738 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 1721668 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 2332243 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 2372933 19833920 ~ 19852625 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 68508 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1701708 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1715486 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 1992023 24220522 ~ 24280708 (-)
G73201 NA other upstream 2799086 25027585 ~ 25030965 (-)

Expression


Co-expression Network