sona (si:dkey-67c22.2,LOC107748125,LOC107673696,LOC107756753,LOC107597485,LOC107656780,LOC107569142)


Basic Information

Item Value
gene id sona
gene name si:dkey-67c22.2,LOC107748125,LOC107673696,LOC107756753,LOC107597485,LOC107656780,LOC107569142
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17628318 ~ 17638227 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248645.1
GATACAGAGACAAGCGAGCGAAGAAGTCTCGGGGTCCTGTTTCACGCGTTTCTGGGATACTGGCGGACTGACTGCGCTCTGAATGTCATGGCGACCAACAGCGAGCAACTTTCTCGAGGTTTCGTAACTGATAAAAACCAAGAAGTCCACAACACGAagTGAAAACTGAGGGTTAACGCATTTCGTGTCCGATTTACAGAACAAAGactacagaaataataaaaactaagaCTGGGATTCAGttaaatcagtttttgaaatgGAGTGTGCCGTAAACACCGGTCCTGATGATGAGCCATCTGATACAGCAGTTTCGTATGAAGCCATTACTGTAAAGGATGGGAGTGAGaccccaaaaaagaaaaacaagaaacataAGAAACACAAAAGTAAGAAGAAACGTAAGAAGCGCAAGGGTGAAAAGGAGAGTAGCTCTGAATCTGGAGTAGAGTCAGATGGCGATTCCCAAACTAGAACGAGtgtgaaaAAAGATGGCTCCTCTAACCCTGAGGCTGATGATCATGCTAATGCCACAAAAAACTGCACAGAAGACCTCAGTGATGTGGAAGCTGATGCCAAGGTTAAAAAGCAGAAACACCGCGttgggaaaaagaagaaaaaaagaagacggAAAGAGGAGGAAAAGCAAGAGGTCTTAAAGAAGTCCTCATCTCGCTCTAGATCGGCAAGTACTTCAGCATCAGGGTCAGAATCAGAACCAGATTCCAAACAATCACAAAAATTGCAGGTGGCAACTTTAAAGTTAGACAGGAAGTCACCTATCACTGCAGCTAAATTTCCAAAAGATAAATGTAAAGATAGCAATCAACTGGAAGATCTAAAGAGAGAAATGACTTCTGATCACACTGAAGAAGAGCGAAGTTTAAAATTAGAAGGCATAAGAAAGATGTCTCCTGAGACGGTACATGCACTAGTTACAGAGAGGGATGTAAAAGTGGAAGCTGTTGGTGAACCTGAAAGTTTTAGTAAAGTGCAAGAACTTCCCGATATTATTCCTAAGCAAGAGAATGTGCACAAAGAGCAAGCTGTGCAGAAGGACATCTCAAAGGAAGCAAATGGGaatcagaaagaaaagaaaaagcagtcCCTTTCAAGGTCAAGGTCACGATCACTTTCGAACACTAAAGGGAAAAAATCTAAACGCAGTCGCTCTAGAACTCCAAAGCAGTCATCTGGTAAATCAGGACGTCGTAATGACAAGTCATCTTCAAGAGACAGGTCTGTGTCTGCCTCTGGTGGGAAGGATCGTACAAAACGAAGAAGCTCAAGGTCTCCATCAAAACAGTCACAGTCTAAAGTAACAAAGAAAACTGGACGCAGGTCAAGGTCACTCTCTGGAAGAAGAGCATATCGCTCTGATTCAAGGTCCCGCACAAGGACCAAAAGATCGAGGACTAGATCTCCACGACGTGGTCATCGTTCTAGATCTAGGTCAACTGGAAGACCAAGACGTTCACGCTCAAGATCAAAACAATCTGTTTCTCGGCGTAAGAATCGTCGCTCAAGATCACGGTCCAGATCTGTACGCAGAGGAAGACACTCAAGGTCCCGCTCTCGAAAGAGGACGCCCGTTTCTCGGGCAAGGAGGTCTAGGTCTAGATCTGTCAGAAGAGCAAGGCGAACACGCTCAAGATCTGTTGTGATTCTTAGGCGATCTAGGTCACGCTTAAGGAGAAACAGAAGATCTAGATCTAGATCCGCTCGTAAAAAATCAGGTTCAAGAAGCCCAAGACGTCGAAGTAAATCTCGGTCCCCTCAGCGCTCCAGGCCCTCTGAGTCACGTTCTCCTGCAGCCCGTCAAAGGAAGTCAAAATCTAAGAGCCCTCATAGCACAAAGTCAGAGTCAGTATCTCCTCAAAGACGTAAAAGATCAAAGTCACGGGCATCTTCACATAATTCAAAGTCTGAATCCCCGAaattaagaaaaactaaaaagcaaaaaagtaaaCGGTCAAGGTCAGTTTCTCAGAGACGCACATCAAGATCTATTTCCAGAGAGCGACAGTCATCAGATAGAAGTATATCCCCTTCCAAGAAAGCACAGTGTAAATCTCCAACTAAAGAGGAGAGGTCCTTAACGGATTCCAAAGAAACCTCAGAGATTAATCAGCAAATTGTGGACGCCGTAGAGGAAAATGTTGAAGTAAAAAAGACAGCAGAGTCAAGTCAATGGATACCAGTCTCTACTGAATGTACATCTGTGCAAAATCCATTAAGTGAAGACATAACAACAACATCAGAATGTGacacacaaagtaaaaaaaataaggaaGAGTCTGAAAATCCCTCTGAATGTGAAGGAAGACCAAACCGATCTCGATCTTTGTCCTCAGAGCCAGTTCCTCAGTGTGGTACTGCAAGATCAGATGATGAAGAAGATCGATCCGCGAGCTCACGATCTCCTACACCAAGTAAAGTAAAAGAAGCAAAGTCCTCCAGCAAAACATCACCTGTTCGAAGAAAGCGCTCCAGATCAGTTTCGTCCACACAGAAAAGGCGATCCAAGTCGAAATCTGTCAGTAGCAAGAGGAGGTCTCCCGTAAGAAAACGCAAGTCCAGGTCTCCCTCTCATAATCGTAAAAGGAGGACAAAATCTCGGTCACCAGTTCGGAAAAGAAGATCAAGATCAGCCAATCGAAGGGCAAAATCAAGATCGAAATCTCACACAAGAACAAAGCGCTCAAAATCGAAATCCCCCAAGCGGAAACGGTCAAAGTCTAGATCACCAGCTCGGAAAAGGAGGTCCAAGTCACGTACCCCTGCTAGAAAAAGAAGATCTCGTTCACGATCAAGGGCTCGTCAGTCACGATCCAGAAGATCACGCTCTGTTTCACGACGAAGGAGACCAGCATTTCGTGGCCGATCTTTTGATAGACGAGATCGATGGAAACGTGAACCAAGCCACTCACCAATTTTAATTCTTCGTAAGAGGAGGTCAACCTCAAGATCTCGACGCAGTTCTAGCAAGACACCACCGCGTCTTACTGACCTAGATAAAGATCAACTGTTGGAGATTGCGAAGGCTAATGCTGCTGCAATGTGTGCTAAAGCTGGAATGCCCATACCTGAAAGTCTCAAACCGAAGGCAATTCTACAGTTACCTCTGCCAACCCCAGCTCCAGCCCCCTTGTCTTTGCCTCTGCCACTGCCTGTGCCCAATTTACCTATGAATCTGCCCATGGGGATACCAGGTATGCCTGCAATGCCAAACATGACAATGAACGCTGCCATGGCAAGTATGACTGCGGCAACAATGACTGCTGCTCTCTCAAACATGGGTGCCCTGGCCTCTATGCCTCCGATGCCCCCACTTCCTACCATTACCAACAAGCCCCCTTCAGCACCCACACCTAATCTGGCCAGTATTGAGGAGGTGAAGAGGAAAGTGGCTCAACAAGCTAACAGCATTAGCATCAAGGAGTTTACAGAGaaatgtaaacagATTGCAGAGAGTAAGGAGGAGATGAGTATTGCACGGCCACATGtttcagatgatgatgatgatgagacaCGGTAACGCACTGTCATTCTGCTGCATCCAGTCCTGACGATGGACACCTGTGGCTCGCATTTTGAAAGGATGAGCTCTGCCAGAGGATTTCATCCGTCATGTAAATTAAGCTTTTGTTTGCTCACAGAAGGACATTTTGAGCATCTGGACACTTGAAGCAACATTGATTTCAGTTATCTTTAAATAGCCAGTTGTTGAAACAGCTGCAAACTACAGGAATCTTTTTTACCATAGACTTAAAAACTACCAGATTAGACCATTCAGTATGTCTAAAAGTGGAACAAAGGCGGTAAAGTGTAAAACAAACATACTACCTGCCCAAAATAACAGTGAAACATTTCGCtttcaggcttttttttttttttttttaccttcattaCATATGGTGCCTCTTGATACCATGAAGAAGGACCTCTGGTAGATTTAACACAGATTTATAGGTGTACCTAAAAGAAGAAACAGATTTTTTGGGTGCAGTTTAGATCACAGATCAGGTCTGTTGGTACACCCTTTCAGAGATTTCTGTTAACATACAGACATGATAATTTTAgggtttggtttgttttcttttttgtcttttttaaaattcataaagtGTTAATCACTTGTTTAAATACATTAGagaagaaaatagtttttgttgctTAACACTTTTGTGAACTTTTAAAGCAGATTAAATGTTGAGGTTCAGAGTTGTGGCTGTACTTGACTGCTATACTTAACAGATGATGTTTGCGTTGATGTGCATTGTAAGGGTTCTGACTGCAGAGAGAGTTACTTTGGTTAAACCTTGCTGTGCCGCTTGCCGGTAACTGACATTGTGGTCTGAcgtcatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgacactcaTTGATGGGGTTaaggtgtttttctttttgtttttttattatttagtccATCATATAGTGCATCCTTGTAAACGACAGGCCATGATGCAGTTGTGTGGTATACAATGCTGTTTTATCTATGTGACTGAAATATTTGACCCAGCATAGCTGCAGGGTAGGATGCTGTATTTTCAGGAGTGAGAACATGTCATCCATCACTATAATGCATATGATTTGCATAAGATTATCGTTTAGACACATGTACTGTAAgatgtactgtatattgtgtAGGTGTgcattttgtcagttttttacCTCTCCCCTCCACTGTGTCCTATGGTGGATACCACTTTACcgatttatctaaaaataaatgtgatgatGGCATAGCTCCTACTAattcacttaaaaatatttaactattaaGGTCGACACATAAAGATTAAGGTTAAAGACCATGTTCAACATGATGGGATGTTCCATGCTACATTAGCTTTAGATTTAGAACCGCTTTACACTTTATTCAATTAACAACAGATTTTAAACTGGAAATGTAAAGCATTGtgaattacaatatttaaattagctgttattattcattttaagggACGGTTCGTCGTTTACTCGCcgtcatgttgttccaaacctgtacgactGACTTTttgcagaacacaaaataagacttTGAAGGTTTGGATGAACGTGAAGGTGATTAAttgatgaaaatgttattttcaggaCTACCCCTTTAATTTGAAAACTGTCATTACGAAATGAGTTCGGCCATGTTGAAGTCTCCTTAAGGATTGTATGAACAAGTTCTACACCTAAGGTACAAGCCCACATTCCTTGCATAAAATGTGAAACATCCTCGGTTTTGACAAAGCGTTTTTATCCTTTCCAtcacattgtgaaatataatggcACACACTTTGTATATAATGCAACTTCAATTAAAGGAAACAATCTACATGA

Function

symbol description
si:dkey-67c22.2 Predicted to enable RNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing and regulation of cell cycle. Orthologous to human SON (SON DNA and RNA binding protein).

NR:

description
PREDICTED: serine/arginine repetitive matrix protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248645.1 True 5370 mRNA 0.42 8 17628318 17638227

Neighbor

gene id symbol gene type direction distance location
si:dkey-192g7.3 NA coding upstream 305143 17319930 ~ 17323175 (+)
LOC122351452 gabpa,LOC107756759,LOC107695462,LOC107595806,LOC107748128,LOC107597487 coding upstream 329173 17292992 ~ 17299145 (+)
LOC122351291 LOC107748130,LOC107673722,LOC107695483,LOC107595821 coding upstream 336483 17287943 ~ 17291835 (+)
LOC122352102 gabpa,LOC107695462,LOC107595806,LOC107597487,LOC107748128,LOC107756759 coding upstream 413850 17208982 ~ 17214468 (+)
tfdp1a tfdp1a,LOC107748134,LOC107597491,LOC107595816,LOC107673714,LOC107756763,LOC107695478,LOC108426071 coding upstream 440230 17178483 ~ 17188088 (+)
rcan1a rcan1a,rcan1,LOC107673717,LOC107597484,LOC107748124,LOC107656781,LOC107756752,LOC107569144 coding downstream 417 17638644 ~ 17647811 (+)
LOC122351635 NA coding downstream 10243 17648470 ~ 17649602 (+)
mab21l3 LOC107597583,LOC107673652,LOC107756750,LOC107656782,LOC107569145 coding downstream 14043 17652270 ~ 17656087 (+)
atp1a1b atp1a1b,atp1a1,LOC107656784,LOC107756749,LOC107569141 coding downstream 24261 17662488 ~ 17672517 (+)
si:dkey-3d4.3 LOC107597481,LOC107660648,LOC107596097,LOC107661133,LOC107714494,LOC107597559 coding downstream 402670 18040897 ~ 18046950 (+)
G71162 NA non-coding upstream 20488 17607512 ~ 17607830 (+)
G71133 NA non-coding upstream 287401 17340700 ~ 17340917 (+)
G71132 NA non-coding upstream 287749 17340342 ~ 17340569 (+)
G71126 NA non-coding upstream 303976 17323799 ~ 17324342 (+)
G71089 NA non-coding upstream 312508 17310985 ~ 17315810 (+)
G71167 NA non-coding downstream 3683 17641910 ~ 17642438 (+)
G71221 NA non-coding downstream 390134 18028361 ~ 18030548 (+)
G71331 NA non-coding downstream 900253 18538480 ~ 18538700 (+)
G71333 NA non-coding downstream 902656 18540883 ~ 18541336 (+)
G71334 NA non-coding downstream 905547 18543774 ~ 18543998 (+)
G71130 NA other upstream 288696 17339127 ~ 17339622 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other upstream 420098 17203797 ~ 17208220 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other upstream 709028 16916761 ~ 16919290 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other upstream 878617 16745893 ~ 16749701 (+)
G70814 NA other upstream 896957 16728507 ~ 16731361 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other downstream 97779 17736006 ~ 17964244 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other downstream 911709 18549936 ~ 18610928 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other downstream 973768 18611995 ~ 18619387 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other downstream 996879 18635106 ~ 18642486 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 1044445 18682672 ~ 18689542 (+)

Expression


Co-expression Network