tmtops2b (tmtops2b,LOC107602912,LOC107688724,LOC107716802,LOC107721599,LOC106586769)


Basic Information

Item Value
gene id tmtops2b
gene name tmtops2b,LOC107602912,LOC107688724,LOC107716802,LOC107721599,LOC106586769
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6807329 ~ 6832254 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248737.1
CGCGCGATCGGCAAAGCTCGCGCGCCCAGCTGCTGAGCTACGGGTTCACAGCTGGGACCGGCAAGCATTTTGCCCCTAGAATGCAACTTTGCGCAGCAGACAAATGAAGTAGCACCGTTCATTTGAACGTCACgtaaaaagctgaaaactgTTGAGAAACTCTGATGGATACTGCGCACTTTAATGAGCAGTACAGGCTGCCTGCTACTTAGAGAGTCAGTTTGCGTGCCTCCTTTGAGCGTCAAGCCCATCTGTCAGCAGTCCAAAGTGTCCTCAGAGGTGAAGCGCGCTGTCAGTgacaatcatcatcatcaccaccatcatcatcatcatctgcacCGAGTTATGATGCTGACGCGCCGCGCCGCGCCGACGCGTTCTTTAAAACGAGAGTAACCGGTGAATTAGAGGCTGTCGCCTCTCGAAATCCAGCACCAACTTTTCTAACTATGTTTTTCGAGCAGGCTGATTTAAACTACAGCTTTAACATGAGCGAGGAAGACCGGCTAACTCTTCTGGACGGGGACTGGAGCGACTCGCCGGTGGAGACGCTCTCCCGCGCGGGCTTCATCGCTCTGTCCGTGTTCCTGGGATTCATCATGACTTTCGGCTTTTTCAATAACTTCGTCGTGCTGGTCCTCTTCTGTAAGTTCAAGACGCTCAGGACGCCGGTTAACATGCTGCTTCTTAACATCAGCGTCAGCGACATGctggtgtgtttgtttgggaCGACCCTGAGCTTCGCGTCCAGCGTGCGGGGACGGTGGCTGCTTGGACGGCACGGCTGCATGTGGTACGGCTTCATCAACTCCTGCTTCGgCATTGTGTCTCTGATATCCTTGGTGGTTCTTTCTTACGACCGCTACAGCACATTGACGGTGTACCAAAACCACGGTCCAGACTATCGCAAACCTCTTCTGGCAGTAGGGGGTTCGTGGCTGTACTCTTTGATCTGGACAGTGCCCCCTCTTCTGGGCTGGAGTAGCTATGGTCTGGAGGGGGCAGGAACCAGCTGCTCTGTATCTTGGACCGAGCGCACGGCCCAGTCTCATGCCTATATCATCTGCCTGTTCATATTCTGCTTGGGCCTACCAGTGCTCGTCATGGTCTACTGCTATGGGAGACTGCTGTACGCCGTCAAACAGGTAGGGAAGATACGGAAGACAGCAGCGCGGAAACGGGAGTACCACGTTTTGTTCATGGTCATCACCACGGTGGTGTGTTACCTGCTGTGCTGGATGCCGTACGGTGTCGTGGCCATGATGGCTACATTTGGACGGCCAGGAATCATCTCACCTGTGGCCAGCGTCGTCCCATCTCTCCTCGCCAAGAGCAGCACGGTCATCAACCCACTCATATACATCCTGATGAACAAACAGTTCTACAGGTGCTTCTGCATCTTGTTCTGCTGCCAGAGGAGTTCGATGCAGAACGGCAATTCCTCCATGCCCTCCAAGACCACGGTCATCCAGCTCAACCGTAGAGTCCACAATAACACCGTCGCCTGCACCGCTCAGATCTCCACCGGCATACACAACCACGACTGCAGCACCGCCACAGAGAGAACCAACCCCCCAGAGGTCACCACCTAACCTGAGCCCAGCTAAACCTTGCCTTGCTTCCTGTGCTTCTTTCTTTTGCCGTTGCAACAGTGAATtgttaattagaaaaaaaaaagtggagtcaACAACGCATTTCATTGCTGATTACTGGGGTCTTTTTGCTGCGTACTTTGAGTGATCTCACTTTGCagcaaaaaacccaaacaacGACATGCACTTAAAAATACTACAGAACAAGGTGAAGTGACGAAGAAAAGAAAGTACACAGCAAGAAGTCTGAAGCATAAGAGCATTATATTAACGCTTCAGATGATGAGGTTTTAAGCACATAGTTCAACGACAAAGACTTCAGATCAGTTTTTCACCAAACTAATCCATAAACTCtaaatgatgttcttttatTACAACCATTTATAATACTTTCTCAACATTTATAACAAAAGTGTCCTGACAGAAAGCGCAGGAGGAGATGGAAGTTATGTtttcagagaagaaaaagacTATATTTAATGTCAATATTTGTATCATCTTTTACAAAAGTATACACACACTACAGTTAAAATGCTTGGAATtagtagaaaaaacaaaacaaaaaaaacttttattcagtaaaggatacattaaattaagTGATGttgaagacatttaaaaatgttacaaaatatattttacatttccattctttttctggctgctaaatatttcagctttgaaatcatGGGAATTAATTAgcctacattaaaaaaaaaaaaaaaggtgaaccCCAAACATCTGAATTATATTGTAACCTTTGTATagtatttgcaaaaatgttttgcacaaaatatgAAACTTGCATTTTTTCGatgattttaaattcttaatcTGATAATGTGCAAagtatttaaatcaattatccAAGTATTTGCTGggttatattttcatttatattcatataattttgtcttttaaatagtttgaaatGATAAATATCATCCTGTTCATGTTTCGTTTGACTTGGTTAAGATTACTGTGCATGGTATTATTTAAAGggatttttaaatgtcaaaacttttttatgaaacaaatcGTCATTCGTTTAGTCTTCAAAAATCATAGTTATCTCTTTGTTGAAGAACTAGTTTTAAGCACACAGATATTGCACAAGcagattttcttttgtgttaatattCATCATACAAACTCTTAAGAAAAAGGTGGTTGAGAAAACAGTTAACATGCATATACTACTGAGGTAATTtcacaaattatatattatgtttaaaacgAGACTTGGTTCTTGGCTAGAACAACACTTAACCATTATTTGTTACCAAAGAAAGAGCACGGTTCCAATATGCCTCAAACGGTCCCATTCCTCTCAGTTATGTTCCTTATGATGAGTTAGCTTGCTATCTGAGCCCATATCACCGATTTATGGAAAATTATTTTACCATGAAGTAGTGGCACACTGATCCAGATGTGACAACGGCAGCGTTTCAGGAACTGCGCAATAAGAAAGACCCTATTTCCACAGGGGGAACCTTCATCCTAAAACACAGACATGAACAATTCACCTGGGATCCAGAAGAAGGAATTCTCAGAGGGATCCCCCCTCCcaaaaaaaaggaggaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggactttggCTTTTGAAATGTGCTGAATGTATGCCTGGCGCTGAATAGTGTCTCTAAGGACTCGATGACACTGCTCAAACTCTTCAACTTTCACCAGAATGGACTGTGTATAAAGTGCCAAACACACCAATGAGAACAATGTATCGGTTTATttgtaaaagttaaaaagaaatgaccTGTAATGACATTACAAACTGGACTGAATTTGTTGTGCCATTTGTTGTTTAAGTATAAAAGCAGATCAATCTATGAATAGAGCACCGCAGATCGATCTCGGAAATCAATGAGTTATAAGTAATGTGTGTAAcgttttctgtgatttttagaAATGGGGGAGACATAAACAGCCTTAAATGTC

Function

symbol description
tmtops2b Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis.

NR:

description
vertebrate ancient opsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248737.1 True 3565 mRNA 0.42 4 6807329 6832254

Neighbor

gene id symbol gene type direction distance location
si:ch73-390b10.2 si:ch73-390b10.2,LOC107688773,LOC107551072,LOC107692818,LOC108266990 coding downstream 80531 6719754 ~ 6726798 (-)
LOC122351204 LOC107716777,LOC107688771,LOC100331465,LOC107602892,LOC107702999 coding downstream 99121 6686218 ~ 6708208 (-)
LOC122352171 fam155a,LOC107716804,LOC107721616,LOC107570097,LOC107702989,LOC107688721,LOC101886421,LOC107735187 coding downstream 208131 6501409 ~ 6599198 (-)
abhd13 abhd13,LOC107570096,LOC107702974,LOC107688719,LOC107551070 coding downstream 309125 6492609 ~ 6498204 (-)
tnfsf13b tnfsf13b,LOC107702981,LOC107688720,LOC107721586 coding downstream 314973 6487238 ~ 6492356 (-)
ecrg4a ecrg4a,LOC107602890,LOC107688728,LOC107716776,LOC107721563 coding upstream 51234 6883488 ~ 6888374 (-)
nck2a nck2a,LOC107602910,LOC107688727,LOC107721610,LOC107676443,LOC107551075,LOC107716798 coding upstream 64223 6896477 ~ 6943442 (-)
c9h2orf49 LOC107716774,LOC107688774,LOC107721580,LOC107676461,LOC107551065 coding upstream 132975 6965229 ~ 6969207 (-)
gpr45 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 coding upstream 137563 6969817 ~ 6974908 (-)
pou3f3a pou3f3a,pou3f3,LOC107716796,LOC107688731,LOC107602909,LOC107721578,LOC107676544 coding upstream 155469 6987723 ~ 6990768 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding downstream 12954 6793402 ~ 6794375 (-)
LOC122351577 NA non-coding downstream 30355 6775074 ~ 6776974 (-)
G68270 LOC107716762,LOC107688772,LOC107602882,LOC107721583 non-coding downstream 89186 6715996 ~ 6718143 (-)
G68266 NA non-coding downstream 109436 6697686 ~ 6697893 (-)
G68265 NA non-coding downstream 124318 6680095 ~ 6683011 (-)
G68357 NA non-coding upstream 50331 6882585 ~ 6882976 (-)
LOC122351994 NA non-coding upstream 60398 6892652 ~ 6895397 (-)
LOC122352164 NA non-coding upstream 150424 6982678 ~ 7035361 (-)
G68473 NA non-coding upstream 495575 7327829 ~ 7341494 (-)
G68489 NA non-coding upstream 549036 7381290 ~ 7381508 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 546260 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 707417 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 763404 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 876193 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 1407449 5396865 ~ 5399880 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other upstream 238731 7070985 ~ 7153954 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 1182195 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 1244214 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 3075934 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3601253 10433507 ~ 10443619 (-)

Expression


Co-expression Network