ifih1 (ifih1,LOC107722900,LOC107563828,LOC107730588,LOC107561563)


Basic Information

Item Value
gene id ifih1
gene name ifih1,LOC107722900,LOC107563828,LOC107730588,LOC107561563
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 26082148 ~ 26104816 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248739.1
GAAACCGAAAGCAAACAGGTCCGGGGAAATAGATCACGGGACGGTCGGCTCTGATAAACGGGGATCGGTGAACTCCGTCAGAAGTCGTGCTGATCTTCACAGCGGTATCTCACGATCATGAGCAGCGACCAGGACGCGGAGACGCGGCACATTCTGGACTGTTTCCGGGACAGACTGAAGCGACTCATCCAGGTCGAGCCGCTCCTGGACCTGCTGCATTTCCTCGAGCAGGACCGGAAGGACCGGATCAAAGCCAGGTTACGCGAGGAGGGGAACGCGAGCGCCGCGGCTCTTCTGATCGACGAGATCATTCGGTCTCAAAACTACGAGCGGGGATGGTCGAGAGAGCTGGTCGCCGCGCTGGAGACCGTCGGCTGCGGGCACGCCGCGAAGTACGTGTTGAACAGCCCCCCGGAGCCCGCGGAGGAGACCGAGAACGACAGCTGCGTGCGGCTCATCGACCTCCTGCAGCTGACGCTCGTCGACATGAAGACCGCGGACGTGTGCGTGCGGTGCCGCGAGCTCGAGCTCCTGACGCGCGAGGACCTGGAGAACATTATGAAACTCACTGAGAACCGGGGGAACATCGGGGGCGCTCGGCTGCTGCTCAAGCGGCTGGTGAAAAACGAAGCGGGCTGGTTTTCCAGATTCCTGCAGGCTCTGGAGGAGACGGAGCACCACGAGCTGGCGCGGGAGCTGCGGGGAGAGCCGTGCAACGAGGACGaggtCATGTCAGTGGAGTCTGTTGAGGAGCCCGCCGCAACGGACGCTAACATGAGCGGCTCTGGGCCCTTTCTCCCTCCCGTTCTGTCAGAGGATCTGGACAGCGGCGGTCTGGGTGCATGTGTCGACAATGAAGaGGTCGACATGTACAAAGAAGGAGAGGAAGAAGATCTCACAGAGGATGATGATCCTGCAGaGAAACGCAAGAGGGATATTATACTGCGCGACTATCAGATGGAGGTGGCGAGACCAGCtctagaggaaaaaaacatcatcatctgCCTGCCTACAGGAAGCGGGAAAACCAGAGTTGCTGTGTATATCACTGAGAAACATTTGGAGAAGAGGAAGCAGATGGGACGACCGGGGAAAGTTGTCGTTTTGGTCAACAAGGTTCCCCTGGTCGAGCAGCACTACAAGGCCGAGTTCGGACGCTTCCTGAAGCACCAGTACTCGGTGGAGCGGGTCAGCGGAGCCTCGCAGCTCAAAATCTCCTTCCCGCAAATCATCGAGCAAAACGACATCATCATCTGCACCGCACAGATCCTGGAAAACTCTCTAGCCAAAGCCAAGAACGGCGACGAGGACGGCATCAAACTATCACAGTTCACTCTGATGGTTATTGACGAATGCCATCACACGAAGAAGGGCGGCGTGTACAACCACATCATGATTCGCTACCTCAAACAGAAACATCAGAACCAGCTACTGAAGAAGCAGGGGAAAAGCCCAGTTGCGTTGCCTCAGATCCTGGGTCTGACGGCCTCACCTGGTGTGGGAGGAGCCATGAGCCAGCAGCGAGCCGAGGAGCACATTCTCCAGATCTGTGCAAACTTGGACGCCTTCACgataaaaacaaagactttCGAAGAGGAGGAGGCCAAAACACCATTCAAAAGGATTGCAAGAGCAGAAGAGAGGAAGGAGGACCCCTTTGGAGACGTGATCAAGAAGATAATGGATGAAATCCACGAGCACGCGGACCTGAAGCCCCTCTGTGAGCCCGGCACGCAAAACTACGAGCAGTGGGTCGTCCAGAAAGAGCAGAACGCTGCTAAGGAGGAGAATCAGAAAGTGCGTGTGTGCGCCGAACATCTCCGTCAATACAACGAGGCTCTTTATCAGAGCAACACCATACGTATGTCAGACGCCTTCCACTTCCTCGACAAATATCACAACGAAGAGCTCAAGACCAAATCCAGCCCCGATGAGGAAGGCACTGTTACAATCACAGACACTGAGAGATTCCTCTTCACTTTGTTCAAAGAGAATAAGGCAAAACTGCAGGAGCTGATGGGAAAGCCTCAGTATGAAAACAACAATCTGGCCCAGCTGAAAACCAACATCCTGAAGGAATTCAGCAcaagagagcgagcgagaggcATCATTTTCACCCGGACCCGCCTCAGCGCCATCGCTCTCTGCCAGTGGATCCAAGAAAACCCTAAGTTTGATGAAGTGGGAGTCAGCGCCAGCTATCTGATCGGCGGAGGAGACCAGAGCGTGGTCAAACCCATGACCGCTGCGGAGCAGAAGGATGTGCTGAACAAGTTTCGAGAAGGGCAGATCAATCTGCTCATAGCCACCACCGTAGCAGAAGAGGGTTTGGACATCGCCGAATGTAATTTCGTCATACGTTACTGCCTTGTGACCAATGAGATCGCCATGATTCAGGCCCGTGGTCGAGGAAGAGCGGAGGACAGCAGTTACACGCTGGTGGCCGAGGCAGGATCTGGggtggcagagagagagagcgttaACGAATACCGGGAGAAAATGATGAGCAAAGCCATCGCCAAAGTGTGCGAGATGAATCGAGCCGACTACGAGAAGAAAATCAGAGAGTTTCAGATGCAGGCCATAATGGAGGAGAAGGTgaagataaaaaagaaacagcagaAGGGAATGATGAAGGAGCCGCCGTCTAAAATCAGCCTGAGCTGCAGGCagtgcagtgtgtttgtgtgctccGGAGAAGACATTGAGAAGATCGAGAACATGCACCATGTCAACGTCACTCCGCAGTTTAGTGAGCTGTTTACAGTCCGAGAGAATACATCTCTACAGGAGCGACTCCTGGACTATGAGACCAATGGGGTCATCGCCTGCAAAAAATGCGGACAGCAGTGGGGCTCAATGATGCTGTATAAGAGCATCGAGTGTCCCTGCCTCCACATCAAGAACTTTGTGGTCACGTACGGCTCCAAGAAGAAGACATTCAGCAAATGGAGCGAGTTGGCCATAAAGTTCCCGGCGTTTGACTACACTCAACACGCCGATCTCCTCGCGGAGGACTCgggggaagaagaagaagacatgGAAACTGATTGAAAATAAAGGAGCGATGATATTGAAGCTGATCTCTATTCTGTTCTACTGAAAGCACTTCTCAGCATCTATCTCAAGTGACATTTTTCACATTCTGATTCTAATGCCGTTTTTGCCTGCAACGgcctaaaacaaataaaacgttgacatttatttcacaattcagatttttttgctaACTTGAAACTTCAAGTTTAgactaataatgaataaaatgtcttGCAATATCTTGCAAATGGTTATTAACATTCACAATTTTCAAGCTTTATCGTCTGAAAATTCTGATATTCTTTAAAATCATGAACAGATTGTGAGATAAAATGTGGTAATTTACCTTtctggttgttttttgtttcatttttttatagatgTTGGAAGAAGGTCTTGTCTTGTAAACTACATTCACTCAAACTGCAttgaattgatttaaataaatgttttctactGTAAAAGGTCATGCATGTGGAAGCACATTAAAGCTGTACAGTCTGTGACAAATA
>XM_043248740.1
GAAACCGAAAGCAAACAGGTCCGGGGAAATAGATCACGGGACGGTCGGCTCTGATAAACGGGGATCGGTGAACTCCGTCAGAAGTCGTGCTGATCTTCACAGCGGTATCTCACGATCATGAGCAGCGACCAGGACGCGGAGACGCGGCACATTCTGGACTGTTTCCGGGACAGACTGAAGCGACTCATCCAGGTCGAGCCGCTCCTGGACCTGCTGCATTTCCTCGAGCAGGACCGGAAGGACCGGATCAAAGCCAGGTTACGCGAGGAGGGGAACGCGAGCGCCGCGGCTCTTCTGATCGACGAGATCATTCGGTCTCAAAACTACGAGCGGGGATGGTCGAGAGAGCTGGTCGCCGCGCTGGAGACCGTCGGCTGCGGGCACGCCGCGAAGTACGTGTTGAACAGCCCCCCGGAGCCCGCGGAGGAGACCGAGAACGACAGCTGCGTGCGGCTCATCGACCTCCTGCAGCTGACGCTCGTCGACATGAAGACCGCGGACGTGTGCGTGCGGTGCCGCGAGCTCGAGCTCCTGACGCGCGAGGACCTGGAGAACATTATGAAACTCACTGAGAACCGGGGGAACATCGGGGGCGCTCGGCTGCTGCTCAAGCGGCTGGTGAAAAACGAAGCGGGCTGGTTTTCCAGATTCCTGCAGGCTCTGGAGGAGACGGAGCACCACGAGCTGGCGCGGGAGCTGCGGGGAGAGCCGTGCAACGAGGACGaggtCATGTCAGTGGAGTCTGTTGAGGAGCCCGCCGCAACGGACGCTAACATGAGCGGCTCTGGGCCCTTTCTCCCTCCCGTTCTGTCAGAGGATCTGGACAGCGGCGGTCTGGGTGCATGTGTCGACAATGAAGaGAAACGCAAGAGGGATATTATACTGCGCGACTATCAGATGGAGGTGGCGAGACCAGCtctagaggaaaaaaacatcatcatctgCCTGCCTACAGGAAGCGGGAAAACCAGAGTTGCTGTGTATATCACTGAGAAACATTTGGAGAAGAGGAAGCAGATGGGACGACCGGGGAAAGTTGTCGTTTTGGTCAACAAGGTTCCCCTGGTCGAGCAGCACTACAAGGCCGAGTTCGGACGCTTCCTGAAGCACCAGTACTCGGTGGAGCGGGTCAGCGGAGCCTCGCAGCTCAAAATCTCCTTCCCGCAAATCATCGAGCAAAACGACATCATCATCTGCACCGCACAGATCCTGGAAAACTCTCTAGCCAAAGCCAAGAACGGCGACGAGGACGGCATCAAACTATCACAGTTCACTCTGATGGTTATTGACGAATGCCATCACACGAAGAAGGGCGGCGTGTACAACCACATCATGATTCGCTACCTCAAACAGAAACATCAGAACCAGCTACTGAAGAAGCAGGGGAAAAGCCCAGTTGCGTTGCCTCAGATCCTGGGTCTGACGGCCTCACCTGGTGTGGGAGGAGCCATGAGCCAGCAGCGAGCCGAGGAGCACATTCTCCAGATCTGTGCAAACTTGGACGCCTTCACgataaaaacaaagactttCGAAGAGGAGGAGGCCAAAACACCATTCAAAAGGATTGCAAGAGCAGAAGAGAGGAAGGAGGACCCCTTTGGAGACGTGATCAAGAAGATAATGGATGAAATCCACGAGCACGCGGACCTGAAGCCCCTCTGTGAGCCCGGCACGCAAAACTACGAGCAGTGGGTCGTCCAGAAAGAGCAGAACGCTGCTAAGGAGGAGAATCAGAAAGTGCGTGTGTGCGCCGAACATCTCCGTCAATACAACGAGGCTCTTTATCAGAGCAACACCATACGTATGTCAGACGCCTTCCACTTCCTCGACAAATATCACAACGAAGAGCTCAAGACCAAATCCAGCCCCGATGAGGAAGGCACTGTTACAATCACAGACACTGAGAGATTCCTCTTCACTTTGTTCAAAGAGAATAAGGCAAAACTGCAGGAGCTGATGGGAAAGCCTCAGTATGAAAACAACAATCTGGCCCAGCTGAAAACCAACATCCTGAAGGAATTCAGCAcaagagagcgagcgagaggcATCATTTTCACCCGGACCCGCCTCAGCGCCATCGCTCTCTGCCAGTGGATCCAAGAAAACCCTAAGTTTGATGAAGTGGGAGTCAGCGCCAGCTATCTGATCGGCGGAGGAGACCAGAGCGTGGTCAAACCCATGACCGCTGCGGAGCAGAAGGATGTGCTGAACAAGTTTCGAGAAGGGCAGATCAATCTGCTCATAGCCACCACCGTAGCAGAAGAGGGTTTGGACATCGCCGAATGTAATTTCGTCATACGTTACTGCCTTGTGACCAATGAGATCGCCATGATTCAGGCCCGTGGTCGAGGAAGAGCGGAGGACAGCAGTTACACGCTGGTGGCCGAGGCAGGATCTGGggtggcagagagagagagcgttaACGAATACCGGGAGAAAATGATGAGCAAAGCCATCGCCAAAGTGTGCGAGATGAATCGAGCCGACTACGAGAAGAAAATCAGAGAGTTTCAGATGCAGGCCATAATGGAGGAGAAGGTgaagataaaaaagaaacagcagaAGGGAATGATGAAGGAGCCGCCGTCTAAAATCAGCCTGAGCTGCAGGCagtgcagtgtgtttgtgtgctccGGAGAAGACATTGAGAAGATCGAGAACATGCACCATGTCAACGTCACTCCGCAGTTTAGTGAGCTGTTTACAGTCCGAGAGAATACATCTCTACAGGAGCGACTCCTGGACTATGAGACCAATGGGGTCATCGCCTGCAAAAAATGCGGACAGCAGTGGGGCTCAATGATGCTGTATAAGAGCATCGAGTGTCCCTGCCTCCACATCAAGAACTTTGTGGTCACGTACGGCTCCAAGAAGAAGACATTCAGCAAATGGAGCGAGTTGGCCATAAAGTTCCCGGCGTTTGACTACACTCAACACGCCGATCTCCTCGCGGAGGACTCgggggaagaagaagaagacatgGAAACTGATTGAAAATAAAGGAGCGATGATATTGAAGCTGATCTCTATTCTGTTCTACTGAAAGCACTTCTCAGCATCTATCTCAAGTGACATTTTTCACATTCTGATTCTAATGCCGTTTTTGCCTGCAACGgcctaaaacaaataaaacgttgacatttatttcacaattcagatttttttgctaACTTGAAACTTCAAGTTTAgactaataatgaataaaatgtcttGCAATATCTTGCAAATGGTTATTAACATTCACAATTTTCAAGCTTTATCGTCTGAAAATTCTGATATTCTTTAAAATCATGAACAGATTGTGAGATAAAATGTGGTAATTTACCTTtctggttgttttttgtttcatttttttatagatgTTGGAAGAAGGTCTTGTCTTGTAAACTACATTCACTCAAACTGCAttgaattgatttaaataaatgttttctactGTAAAAGGTCATGCATGTGGAAGCACATTAAAGCTGTACAGTCTGTGACAAATA

Function

symbol description
ifih1 Enables protein heterodimerization activity. Acts upstream of or within regulation of transcription, DNA-templated. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human IFIH1 (interferon induced with helicase C domain 1).

NR:

description
melanoma differentiation associated gene 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K12647 IFIH1, MDA5; interferon-induced helicase C domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248739.1 True 3551 mRNA 0.51 16 26082148 26104816
XM_043248740.1 False 3491 mRNA 0.51 15 26082148 26104816

Neighbor

gene id symbol gene type direction distance location
LOC122351282 fap,LOC107563829,LOC107722901,LOC107677917,LOC107561562 coding downstream 1361 26068238 ~ 26080787 (-)
gcgb gcgb,gcg,LOC107730589,LOC107677918,LOC107722905,LOC107674768,LOC105907977 coding downstream 15135 26065212 ~ 26067013 (-)
LOC122352035 rbms1,LOC107675130,LOC107730583,LOC107663836,LOC107722911 coding downstream 162452 25862753 ~ 25919696 (-)
LOC122351834 LOC107572957,LOC107663596,LOC107573769,LOC107728255,LOC107661170,LOC108265697 coding downstream 619299 25459895 ~ 25462849 (-)
gpbar1 LOC107656509,LOC107564146,LOC107688960,LOC107739693,LOC107596586 coding downstream 1274367 24803623 ~ 24807781 (-)
G73385 NA non-coding downstream 19316 26054867 ~ 26062832 (-)
G73379 slc4a10,LOC107722898,LOC107674766,LOC107730592 non-coding downstream 36735 26044164 ~ 26045413 (-)
G73308 NA non-coding downstream 116254 25945401 ~ 25965894 (-)
G73351 NA non-coding downstream 219736 25860328 ~ 25862412 (-)
G73350 NA non-coding downstream 235352 25834317 ~ 25846796 (-)
LOC122351758 LOC107663860,LOC107722919,LOC107561565,LOC107585695,LOC107675138 other downstream 228845 25794083 ~ 25853303 (-)
G73347 NA other downstream 289092 25790517 ~ 25793056 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other downstream 623406 25456414 ~ 25458742 (-)
G73301 NA other downstream 732508 25348778 ~ 25349640 (-)
G73201 NA other downstream 1051183 25027585 ~ 25030965 (-)
LOC122351579 LOC107563831,LOC107730593,LOC107677922,LOC107674758,LOC107722906 other upstream 1841 26106657 ~ 26187631 (-)
fign fign,LOC107730568,LOC107722902,LOC107677893,LOC107674765,LOC107600675 other upstream 167560 26272376 ~ 26331126 (-)

Expression


Co-expression Network