tfg (tfg,LOC107655517,LOC107720125,LOC107748203)


Basic Information

Item Value
gene id tfg
gene name tfg,LOC107655517,LOC107720125,LOC107748203
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10226387 ~ 10235671 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248804.1
GCGCGGTTGTGGTTTTGCCACGTACAGGTCGCTGTGAGGCGTTTCCGATCATCAGTCAGTCAGGCGTCGTTCAGCTAAAGTCCAGGACACACAGGCTGCTGCTGGGATTGACACGTCCAAACCACCAGtatGAATGGCCAGCTGGACCTGAGTGGGAAGCTGATCATTAAAGCTCAGCTGGGTGATGATATCCGCCGGATCCCCATCCACAATGAAGACATCACCTACGACGAGCTCCTGCTGATGATGCAGCGAGTCTTCCGCGGGCAGCTCCAGAGCAGCGACGAAGTTACCATCAAATATAAGGATGAAGATGATGATCTTATCACCATCTTTGACAGTTCTGATTTGTCCTTTGCAATCCAGTGCAGTAGAATATTGAAGCTCACTCTTTTTGTAAATGGGCAGCCTCGGCCACTGGAGTCGTCTCAGGTGAAGCACCTGCGTAGAGAACTGATCCATTTGAGGAATAAAGTCAACAGCCTGCTGGACAGCCTGGAGCCCCCCTCAGAGTCTGTCCCAGAGAGCACCAACCCAGAAACCGAATGTGTGAATGAGGCCGTAGATTCAACGGTGAAGCAGGCCCCTCCAGTCAGTGCTGCTAGCATGTCTGCATTCGACCCTCTGAAGAACCAGGAAGAAGTCAACAAGAATGTCATTTCTGCATTTGGCCTGTCTGAGGAACCTGCCCAAGTTCCAGCTGTGGCCGCCACTGCTGCTGCAGAGGAGCGCTCTGCTACTCCTGACAGTATTGCCTCTTCATCCTCTGCAGCGCCCCCTTCTGCTGTGGCTCCCCAGGCTCCTCCAGCTTACTCAGGGGTCCAACAACCTCCCTCTGCTACTATGGATGGTCAGATGTATCAGCAGTATCAGGCTCCAGGTGGATACCCTCCACCAGCTGGACCCCAGCAGCAGTACGGGATGCAGTACCCTGCTGGTTATACTCCTCAGTCTGGTGTTCCTCAGGCTCCGCCTCCTCAGCAGCAGTTCCAGAATTACCCCGCCCCTACCTCTCAGGCTGCTGGTGCTCCTGGCTCCGCCCCAGGGTTTTCCGGCCAATCACAGCCTCCTGCTCCCCAAGGACCCACCCAATACCCGCCTGGAGCATTTCCGCCTCAAAACTACACATCCCAGGCCTCTCAGCAGCCAGCTAACTACAGCCTGCCTCCAACCTCCCAGGCCACAGGAGGTTATCAGCCTCGTCCCGGATACACCCCGCCGCCAGGCGCCACCCCTCCCCTTGGGGGTGCCAACCCCTATGCCCGAAACCGCCCCCCTTTTGGCCAGGGCTACACCCAGCCGGGCCCTGGGTATCGGTAAGAGGCCACTAGTATCCTCACAGCACCTCGCTACAAGTTTTCTGTCTCCAACGCATCAGCCCCCAAAATCTGTGTTTGACATTCTAATatcgtgtttgtgtttgtttgtgctttgCGTGATTGAAAGAATGCGTGTGAGAATGAGATTGaggttgtatgtgtgtgtttgcacacatGGGAGACCAAATGGTGTGGAAGtggacagctgtgtgtgtgtgcgcgtgcattttattttatcacgGTCTCCTCATTGGTGTTATTTTGTCATAAACCATGAGTCTGTTTAAACACTAGAAAATTATCATAATCAAAGTAAGtgatatttgtttagttttctttacttgttttctttactttttccaATGTCCTGGTTTTTACTAACCCCTGACTGGCCCTCTGCAGTGAAGCCTGTCATTTCTGTATAAACTGTAACATTGTTTTCAGGAGGTGAATAAAGACTTTGAGACTGAA
>XM_043248805.1
CGCGCATGCGCGGTTGTGGTTTTGCCACGTACAGGTCGCTGTGAGGCGTTTCCGATCATCAGTCAGTCAGGCGTCGTTCAGCTAAAGTCCAGGACACACAGGCTGCTGCTGGGATTGACACGTCCAAACCACCAGcagtatGAATGGCCAGCTGGACCTGAGTGGGAAGCTGATCATTAAAGCTCAGCTGGGTGATGATATCCGCCGGATCCCCATCCACAATGAAGACATCACCTACGACGAGCTCCTGCTGATGATGCAGCGAGTCTTCCGCGGGCAGCTCCAGAGCAGCGACGAAGTTACCATCAAATATAAGGATGAAGATGATGATCTTATCACCATCTTTGACAGTTCTGATTTGTCCTTTGCAATCCAGTGCAGTAGAATATTGAAGCTCACTCTTTTTGTAAATGGGCAGCCTCGGCCACTGGAGTCGTCTCAGGTGAAGCACCTGCGTAGAGAACTGATCCATTTGAGGAATAAAGTCAACAGCCTGCTGGACAGCCTGGAGCCCCCCTCAGAGTCTGTCCCAGAGAGCACCAACCCAGAAACCGAATGTGTGAATGAGGCCGTAGATTCAACGGTGAAGCAGGCCCCTCCAGTCAGTGCTGCTAGCATGTCTGCATTCGACCCTCTGAAGAACCAGGAAGAAGTCAACAAGAATGTCATTTCTGCATTTGGCCTGTCTGAGGAACCTGCCCAAGTTCCAGCTGTGGCCGCCACTGCTGCTGCAGAGGAGCGCTCTGCTACTCCTGACAGTATTGCCTCTTCATCCTCTGCAGCGCCCCCTTCTGCTGTGGCTCCCCAGGCTCCTCCAGCTTACTCAGGGGTCCAACAACCTCCCTCTGCTACTATGGATGGTCAGATGTATCAGCAGTATCAGGCTCCAGGTGGATACCCTCCACCAGCTGGACCCCAGCAGCAGTACGGGATGCAGTACCCTGCTGGTTATACTCCTCAGTCTGGTGTTCCTCAGGCTCCGCCTCCTCAGCAGCAGTTCCAGAATTACCCCGCCCCTACCTCTCAGGCTGCTGGTGCTCCTGGCTCCGCCCCAGGGTTTTCCGGCCAATCACAGCCTCCTGCTCCCCAAGGACCCACCCAATACCCGCCTGGAGCATTTCCGCCTCAAAACTACACATCCCAGGCCTCTCAGCAGCCAGCTAACTACAGCCTGCCTCCAACCTCCCAGGCCACAGGAGGTTATCAGCCTCGTCCCGGATACACCCCGCCGCCAGGCGCCACCCCTCCCCTTGGGGGTGCCAACCCCTATGCCCGAAACCGCCCCCCTTTTGGCCAGGGCTACACCCAGCCGGGCCCTGGGTATCGGTAAGAGGCCACTAGTATCCTCACAGCACCTCGCTACAAGTTTTCTGTCTCCAACGCATCAGCCCCCAAAATCTGTGTTTGACATTCTAATatcgtgtttgtgtttgtttgtgctttgCGTGATTGAAAGAATGCGTGTGAGAATGAGATTGaggttgtatgtgtgtgtttgcacacatGGGAGACCAAATGGTGTGGAAGtggacagctgtgtgtgtgtgcgcgtgcattttattttatcacgGTCTCCTCATTGGTGTTATTTTGTCATAAACCATGAGTCTGTTTAAACACTAGAAAATTATCATAATCAAAGTAAGtgatatttgtttagttttctttacttgttttctttactttttccaATGTCCTGGTTTTTACTAACCCCTGACTGGCCCTCTGCAGTGAAGCCTGTCATTTCTGTATAAACTGTAACATTGTTTTCAGGAGGTGAATAAAGACTTTGAGACTGAA

Function

symbol description
tfg Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within COPII vesicle coating. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 57. Orthologous to human TFG (trafficking from ER to golgi regulator).

NR:

description
PREDICTED: protein TFG isoform X1

GO: NA

KEGG:

id description
K09292 TFG; protein TFG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248804.1 False 1790 mRNA 0.52 8 10226387 10235664
XM_043248805.1 True 1800 mRNA 0.52 8 10226387 10235671

Neighbor

gene id symbol gene type direction distance location
rpgra LOC107555232,LOC107663889 coding downstream 66381 10149875 ~ 10160006 (-)
srpx srpx,LOC107748210,LOC107663918,LOC107555235 coding downstream 77146 10140293 ~ 10149241 (-)
LOC122351802 NA coding downstream 124659 10098080 ~ 10101728 (-)
LOC122351801 NA coding downstream 130143 10092350 ~ 10096244 (-)
gja5a cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107720145,LOC107655501,LOC107600426 coding downstream 155502 10060318 ~ 10070885 (-)
jagn1a jagn1a,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC107600432,LOC107663862,LOC108432576 coding upstream 627 10236298 ~ 10237964 (-)
col8a1a col8a1a,col8a1,LOC107720134,LOC108432575,LOC107748221 coding upstream 3626 10239297 ~ 10247492 (-)
tmem30c tmem30c,LOC107655489,LOC107706099,LOC107720155,LOC107555223,LOC107600433,LOC107663858 coding upstream 43187 10278858 ~ 10284622 (-)
cmss1 cmss1 coding upstream 49355 10285026 ~ 10289515 (-)
LOC122351326 LOC107706086,LOC107555206,LOC107663846,LOC107720148,LOC107655485,LOC107600435 coding upstream 173088 10408759 ~ 10411514 (-)
G69168 NA non-coding downstream 87628 10136649 ~ 10138759 (-)
G69136 LOC107555234,LOC107655498,LOC107748211,LOC107663925,LOC107720146,LOC107600385 non-coding downstream 116144 10108975 ~ 10110243 (-)
G69147 NA non-coding downstream 139365 10085433 ~ 10087022 (-)
G69018 NA non-coding downstream 280585 9913086 ~ 9945802 (-)
G69004 NA non-coding downstream 334791 9890651 ~ 9891596 (-)
LOC122351639 NA non-coding upstream 18262 10253933 ~ 10263447 (-)
G69223 NA non-coding upstream 190556 10426227 ~ 10426465 (-)
G69228 NA non-coding upstream 208622 10444293 ~ 10444641 (-)
G69231 NA non-coding upstream 209606 10445277 ~ 10446767 (-)
G69346 NA non-coding upstream 601841 10837512 ~ 10844040 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 316209 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2131540 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 2201715 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 3072433 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 3965318 6246900 ~ 6261069 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 197836 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 279601 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 444487 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 1160995 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 1261276 11496947 ~ 11500495 (-)

Expression


Co-expression Network