LOC122351607 (abi3bp,LOC107748202,LOC107655519)


Basic Information

Item Value
gene id LOC122351607
gene name abi3bp,LOC107748202,LOC107655519
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10208849 ~ 10226652 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248806.1
cacaaaaccatACCACACAGTTTCTCTCACACCGAGTGTGCACTGACACCTGATCTGGGGTCACTTTAAAGGACAAGGAGAAAGCATATGATTCAAGAAAGAACAATTGCAAaagttagatagatagaagagGTTTGAGTGGACTATATGAGCTCTGTATTGTTTTCTCTGAGAAAAAAGGACAACATGCgagtcttcctcctcctcttcctcagtgAGATCTTGCTGCTGAGACTGACCTCCGCAACCACCATAAAAGAGCAAAGACAAAACATGAGGGTGCGTATCAGCGCAGTTGGAGACACCATTGTATTGAAGTTCATCCGGCCCCATGCGGACACCAAACTGGAGGGATATATCCTGGGCTATGGCAGCAGTATGTTCTCTAAACAATTTATCCAGCTACCTGAAGATGGACAACCCTATGAGACTGAGATAGATGCCGAACCTAAATATCTTGTTGCAGTACAGTCGAAGTTTCCTGAGGAACCTAAGAAAAAGTGTGCTAGAAAAGTAGATCTAGACAAACCACTGAACGTTGTGATTGGCTCAGTAACGGAGTCGTCAGTGCTGCTGTCCTGGGGGACACTACTGACCAGCCCCTTCATGGATACCGTTGTGGAAGACTGTTTTGAAGAAGGTCAGTTCACAGTGCGCTATAGAGAGAAGGAACCCAGCAACACCTGGAACTACCAGACCTGTCCATCCACCAGCACGGTCATCGACAACCTCAAACCAGATGCTTTGTATGAGTTTACAGTCCGAGCAGACACTGACACCAACAGTGGAGTCTGGAGTCCACCAGTCGTCCATAACACAGCTGATCAAATAATAGAGCCTAAAGAACTAAACCAGGCGAAACCTAAGAATCCAGTTTTAGCAAGCCAGGAATCATTGCCACCAGAGCCAGTCTTAAACAACATTAACCAGACCAGAACAGCTCCTCTATTCAGATACCCTAGCCTTCCAAAGCCAAGCAAAACATCAGTTTCATCAACATGGACAGTTCCTGACAATCCACCTACCTCAACTGAGGCCCTTCTTTCCTCTCAGACATCTATAATTCTGCCCACTCCAAAGACCACAAACACAGTTCAACCTCAAAACCTCTCCAGCCATCCCAGTACAACCCATGCAGATCTTCTGCCAGAGCAACATACTAGCATAACCTCACAACAACCTACAACATCTCAGCCACCACCTTCCAGTACGCAACAACAAACAAGCACAACCCAAACACCATCCACTACAATCCAACAATATACCAGCAAAATGCAGACCACGGTCAAAGATCAACCAAATACAGCGCAACAGCTTCTAATTACAGCCCTACAACAGATTAGAGAAACATCTACTCCAAATCCACCTACAACCAAACCACCAATTCAACAAACCCAACGACTCACCACAAACACTATAACTCAAGAAACTGTCCATAGAAGAAAAATACAGCCCAGCACCAAGCTACATCGACTGAGCACAACCCAACGTTCACAAGGCACGTCCAAACACCAAACCACTCAAACTTATTTTCCAGAAACCACATCTCACTACCAATCCAGCACCATCACACATCCTGAACAGCCAAACACCAAACCACCACCAACAACACAGGATTGGTCCACAAATAGCCATTCACTGACAAAGACAGCTTTGACTTCACCCACCACTTTGACAAATATTGTCTTAGTAACAGACCAACAAACAGATATCTTAGTATCGCAGCTGAAAACCGATGTTAGCAAACATCCGGTGTTTAGCTCTAATCCACCCATCCCTGAAGAATATTCTACATCTCATATTCCCAAAACTAAAAATCCACCTATTACTGAGAACATACAGAAACTGACTCCACATCCTATATATCTACCCACAACCTTTTGGTACCAGCCCAGTCCCAGCACCATAACTAAGCATTCCAGCACCACTAAAAAGCAAGCTAGTACTGCTAAATACAACCCCAAAACGGATTCCCAAGTTGAAAATCAACCACCTACCCCTGAAGAATGGTTGCCAGATACCCCAATACTAAACATCACACCTCAAACAACTTTCACCAAATCCGATGCCTTACAAAACACACCTGCGACGGAGAGGGTAACAGTGGGGACGAGTCATCCAAGTCGACCAGCGGCTACTTCCCAGCCAAAGGACGAACAGCTACTGTCACAGCCAACACTTACAAATGAGGTGGCCAATAGGAATGAGGGCAGAGGTATCTTTCGCAACTCTTCTTCTGTGTCCCACCTCCTGGCACGAAATGTTACACAGAGATTAACACCTAATGGTCGTGTCCCTTCAGTTCATCATACAAGGTTTTTCAGGCCATCCTCTGGATATCGTAACTCAACAGGCAACAAGAAAAAGGGTATAAAAGtGCCCCATGGTGAGCAACATCAAAGGCTTTTGGGGTCCAAATTTCCAAAGGGAATCAGAGAGCAACTGGaaaatacaaagCTGAACCAGGTCTCAGAGACTAAAGAAAAGGaaaacattattgatCTGAAGCAGATGGACCCAGTACCAGATTTAAAACCTCTAGCTCCACCCACTACTGAAAGACCAGCCAAACAACGGCCACCATCGACAACAACACCACAATCTCTTTTTGAGGGGAGTCGTTTTGACACTGGTGACAACTCCTCTGTATTCAGTTCTCATCCCCTCTCTGAGGTAGATGCCACAGGAAAGAAACGTTTCGTAGGGCCTCATGTGATCTATAGAACCGACAAACGTCCGGAGGAACCATGCTCTGTCACTAACTCTCTCAGCTTCTTCCCTGATGAGGAGATCGGATACTTGAATGTCACTGGCCCACCCAAGACCCCTCCATCCAACCTTACTGTGGTCACAGTGGAAGGATGCCCCTCCTTCATCATCCTTGACTGGGACAAAACAGACAACGAGACCACAGAATATGAGGTAGTTTCCTCCACCAAAGGTCCGCATGGTGAGGAGGTCTCTGTCCAAACAACAAATCAAACACATACTGCTGTGGAAAACCTGAAACCAGAGAGCagTTATGAGTTCAAAGTTACACCCAAGAATGAGCTTGGTTCAGGCCCAGCCAGTGAACCTGTCACCTTCAGTACTGAGTCAGCTGATCCTCGTGTGAGTGAGATCCAAACCGGTAAAAATGCCATCTGGTCATCGTTTCCATTCAAGTCTGACTCATACTCCGAGTGCAACGGGCAGCAGTTCATAAAGCGGACCTGGTACCGCAAGTTTGTGGGTATCCAGTTGTGCAACTCTCTTAGATACAAGATCTACCTGAGCGACTCTCTCAAAGgGAAGTTTTACAGCATAGGAGATCAGACTGGGTATGGAGAGGATCACTGCCAGTTTGTTGACTCGTTCCTGGACGGACGAACCGGTGGTCCTCTTCAACCACATCAGTTACCACCCAGAAAAgGCTTTTACCGGGCCATGCGCCAAGAGCCTGTCAAGTTTGGGGACATCGGAGGAAATTCCATGATCAACTACGTGGCCTGGTATGAGTGTGGGATTCCCATTCCTGGGAAGTGGTAGGATCCTGAGGAGCAGATGGAAGACGTGACAGATAAGAAACATCCGCTCCTGAAGGAAAACAGCCTTTTCTATGGGATGTTTGTATAGAGAGTGATTTAACGGGAGTGTTTATCTGAATTTTCGGGTATCGGGCacatacagatttatttatatactgaaGTAGTGCAGCAAACGTACAGAGAGCTAAATCAGTTTTATTGTTGAGATTTAACTTTTGAGAATATAGGGAAGCAGGCTCCCTTAAAGGCGAAATgaatgtgtatattatttatcaaaatgttaaatatgccAGTGAAACGAAAATGACCACGGCCGACTTAAAGGAACGTTCCAGGTTCAAAACAGGTTTTGTAGACAGCATCTAGaacattacagaaaaatatctttactaacaagttatatttgtattatataaatgtatgtataatataaatatatttatataattataaaaatgtcacttatgctttgctttttacaaaaaaaaaaagtgatttttgcaCGTTTTCTCTGTCAGCGGTCCTTTTTTGGACTTTGCAAGTACTGTGCAAACGTTACCAGGTTTACGGGCTTTATATGGTCATACACTAGTCTCATGTGAATATcctaattaaatgttttggcttCACGAAATACTGTGTATTTTAAGCTTTATCCGGGTGCAGTGCTTTGCCCCATTTTCATTGGAGGTGCTTTATTCTGaccatttttttccaaatagagtcaaatgatttttctgtcaatatgtcACAGATGCTGTTAACATACTTATGTACTAAGCTTGAAACATTCCTTTAACAGCTCAAGCGCAATGTTAAACAAGAAATTTAAAGACTAGGTCATATAAACTATTGTTCAAGACATGCAGCTTTTCAAGTAATTGTTGTAATTATACTATGTATGAATGTCAGAAATGCAACATCTCTTTAACAAGGAAGTCTATTGTTTTGTACAGAAGTTCAGTGACTCATGATTTCCAGAGAAAGCTTTTAAATGCCAGATTTTATgtaacatgtttttacattgaaactttgatatattttataaggTTTATAATGAATCCGCGTTACCAATAAAAGCACAAGCAGTTTATTTTACGATCTTCTTTTTTGGTGGCTACAGTTTAAAATTGTTCGAGTCTGacatgaaaatatacattttttcatgttgtttttttgcaatcctgatcagttaaaaaaaaagacccaaaACAAGAGATAAATGTTAAATCCATGAACAAAGATGATTCAGTCTCAAAGTCTTTATTCACCTCCTGAAAACAATGTTACAGTTTATACAGAAATGACAGGCTTCACTGCAGAGGGCCAGTCAGGGGTTAGTAAAAACCAGGACATtggaaaaagtaaagaaaacaagtaaagaaaactaaacaaatatcaCTTACTTTGATTATGATAATTTTCTAGTGTTTAAACAGACTCATGGTTTATGACAAAATAACACCAATGAGGAGACcgtgataaaataaaatgcacgcgcacacacacacag

Function

symbol description
abi3bp Predicted to enable actin filament binding activity and glycosaminoglycan binding activity. Predicted to be involved in regulation of actin cytoskeleton reorganization; regulation of dendritic spine morphogenesis; and regulation of postsynaptic density assembly. Predicted to act upstream of or within extracellular matrix organization and positive regulation of cell-substrate adhesion. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: target of Nesh-SH3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248806.1 True 5040 mRNA 0.42 23 10208849 10226652

Neighbor

gene id symbol gene type direction distance location
impg2a impg2,LOC107748205,LOC107655518,LOC107600387,LOC107720123 coding upstream 8021 10185746 ~ 10200828 (+)
mid1ip1a mid1ip1,mid1ip1a,LOC107655494,LOC107748224,LOC107663855,LOC107555231,LOC107600390 coding upstream 42427 10165180 ~ 10166422 (+)
otc otc,LOC107555229,LOC107663890 coding upstream 45913 10160341 ~ 10162936 (+)
sytl5 sytl5,LOC107555233,LOC107663897,LOC107748209,LOC107655524 coding upstream 69604 10117861 ~ 10139245 (+)
asb11 asb11,LOC107748226,LOC107720119,LOC107655497,LOC107600386 coding upstream 91301 10113994 ~ 10117548 (+)
dcbld2 dcbld2,LOC107600392,LOC107655516,LOC107706081 coding downstream 35726 10262378 ~ 10279903 (+)
LOC122351198 LOC107706096,LOC107663847,LOC107663844,LOC107555219,LOC107706098 coding downstream 175693 10402345 ~ 10405495 (+)
LOC122351200 LOC107663844,LOC107555219,LOC107706096,LOC107706098,LOC107663847 coding downstream 179331 10405983 ~ 10408038 (+)
LOC122351943 NA coding downstream 185028 10411680 ~ 10415823 (+)
spryd7b spryd7b,spryd7,LOC107655514 coding downstream 215418 10442070 ~ 10446473 (+)
LOC122351843 NA non-coding upstream 29469 10175048 ~ 10179380 (+)
G69042 NA non-coding upstream 100665 10107840 ~ 10108184 (+)
G69034 NA non-coding upstream 137958 10070658 ~ 10070891 (+)
G69033 cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107655501,LOC107720145,LOC107600426 non-coding upstream 146413 10062208 ~ 10062436 (+)
G69032 NA non-coding upstream 146962 10061685 ~ 10061887 (+)
G69089 NA non-coding downstream 193830 10420482 ~ 10420692 (+)
G69090 NA non-coding downstream 195391 10422043 ~ 10422253 (+)
LOC122351945 NA non-coding downstream 196562 10423214 ~ 10435142 (+)
G69080 NA non-coding downstream 222049 10448701 ~ 10457161 (+)
G69075 NA non-coding downstream 222355 10449007 ~ 10458086 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 34066 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 95493 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 641852 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 1048028 9156045 ~ 9160821 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other upstream 1058756 9142592 ~ 9150093 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other downstream 102079 10328731 ~ 10395230 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 795084 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1238952 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 1819847 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 2208336 12434988 ~ 12452365 (+)

Expression


Co-expression Network