rab5b (rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395)


Basic Information

Item Value
gene id rab5b
gene name rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11210200 ~ 11216654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248821.1
AATTTGACCCGTGTGGCTCAGTGCGCATGCGCGGAGGTGCAGGAAGTGCTCGCAGCAGACCGATAACCAGCTGATAGATCAACAACCGAACAGCCGCCACCAAAACAGCCGCGACTGGCGACAACAGCATCACAGTCTGACAGCTGTCCTCACAACTTTAGAAGAAGTCTCCTGTactaaaaaaacccaaaacaacaGCTTGTCTGCTTTGAGCTGCTGCTTTTGGAGACGCTGTCAGGGAGGACGGCCACCCTTCCTACATCATGAGCACTCGCGGGACCGGCAGGGCCAATGGAAGCCTACCGCAGACCAAGATCTGCCAGTTCAAATTGGTGCTGCTGGGAGACATGGCTGTCGGCAAGTCCAGCCTAGTGCTGCGCTTTGTTAAGGGCCAGTTTGACGAGTTTCAGGAAACCACCATTGGAGCTGCTTTCTTGGCACAGTCTGTTTGTCTGGATGACACTACGGTGAAGTTTGAGATTTGGGACACAGCCGGACAGGAGCGCTACCACAGCTTGGCCCCCATGTACTACCGTGGAGCCCAGGCGGCTATTGTAGTTTTTGACATCACCAAGCCTGAAACATTTGAGCGAGCGAAGGCTTGGGTGAAAGAGCTGCAGCGGCAGGCCAGTCCCAACATCGTCATTGCTCTCGCAGGAAACAAGGCTGATCTAGCGGATAAGAGACTCGTGGAGTATGAGGAAGCACAGACATATGCAGAAGACACAGGCTTGCTTTTCATGGAAACCTCTGCCAAGACTGCAATGAATGTAAACGAGTTGTTCCTGGCCATTGcaaagaAGATGCCAAAAACAGACACCCAAAACCCCACGCATGCTGCCCGACACAGGGGGGTAAACCTGCAGGACCCAGACGCACAGTCCACTCGAAGCTGCTGTGGGAACTAAAGGCCTGTCAACACTCCATCACGGGAGACCACCGACACCTTCTCCTTCCCAAAATCCCACCCTTCACCTTTTCACATCCTTCTAAGACGGATACGGAAAGAAACCGAAAAGAGAGAGGAATAACAGAAAGAGATTGAGGGGAAAATCCCTCAGTGATGCCATAAAGAGATTTTCCAAGGAAGACTTCTGATGGTCAGGGCAGAAAGTGAACGGACGATGGACGCTGTCATGTCTGGCAGTATAAATGgattctgtattatttttaaatcgaTAATTTTAGCCTCTGTTCGTTTTCATTATGCAAGCAACAAGGTGTCACCCAAAGAGAAAAGAGATACAGGAACACAGAATTATTTCATCGACAAATCCCGTTCTCAGTCCTGGATTGAACCGAGATGATCCACAACGTCCCCCTCAAAACAGAAGTCTTCAAGCCTCCGTATTTTATCCATTAAGAGTATCCGTATGCTCTAGGCTCCCAACTCTTGATCCCAACTCTAGCACTGGAAGGACGTCAGCACCTTAATCTAAACTAACCCTTGCAATTGTTGAAGCACGAGCCACATCTACTAAACTTTTAAACTACAAAAGGAACACTGAAGCAGTTTTTCATTCAGCctgagcttgttttttttttcagcctccAGCTTTATTTATTACCTTTATTTGAACTGGTCTCCCTTACGTAACTCGTCATTCACCTTACACCCAGAAAGTATTGAACATCAGCGTCTTCCCTATAACATTTCCTTCTCCCAACCACTCTGACCTTGAAGTTCAGTGTTGAAGTTAACGAAACAACAGCAAGCTCTACGATGCCTTCTCTACGTTCTGGTCGCTTTGTGTAAACTACTGTTTGagaaacaatcaaaaaaaatcattacaccATGTTGGCAGCAACCAGATGACTGATCGCAGACCATTTCGCTTCACACATACTCGCAGAATAACGCACATTGATTCGTCTGGAAAAGGAAGTCATGCAATACCAGGCCAGTGTCTCAGTATGTGTTattaaaaagcaacaaaaaaattcaagcaCCCGCAAATCAACAAGGTGAAGGATTTAGCAACCAGTGTTGTGCGATACGTCAGGACGGCAAATAGCAGCAAGGGAATTTTTGGCCCACAAAGCCCctgaaaaagtggaaaaaaacagaagtgcCTACTCCGTTTTTTCCGTGTTCTTTGTTTTGGGCTTGTTTGAGGTCGTCAGACCCACGAAAAGTAGCGTTTCGAGATGTTGGCCCGAAGTGTACAGGCAATAACCTGTAGAAAATAATTAGTTGAGCGTGTTAGTAACAGTCATTTATGAAGTTTTGTTTTATGGATGCCGTTTGTTGATgtgtataaaaatgtgttttatttaaaattgattttagtcAGCAATTTAATGGGttacaaatagttttttggtCATTTAGGGAATGAATTAGGTATCATTATATGGTGTCACACAGCTAGAAgtcatttgtcatttgttttcagGTCCACCTTTTTTGTGGAATAGATCTGATCTCCTGTTAACACCTCTGTGaactgaaatgttaaataaagctGTGCTGTTCTGCTATGAATGAAA

Function

symbol description
rab5b Predicted to enable GTPase activity. Predicted to be involved in endocytosis; intracellular protein transport; and regulation of endocytosis. Predicted to be active in early endosome; endocytic vesicle; and plasma membrane. Is expressed in pronephric duct; pronephric mesoderm; pronephros; telencephalon; and yolk syncytial layer. Orthologous to human RAB5B (RAB5B, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-5B isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248821.1 True 2490 mRNA 0.45 6 11210200 11216654

Neighbor

gene id symbol gene type direction distance location
armc8 armc8,LOC107598169,LOC107551954,LOC107733643,LOC107663904,LOC107738509 coding downstream 5232 11193693 ~ 11204968 (-)
idh1 idh1,LOC107663883,LOC107698523 coding downstream 113519 11089670 ~ 11096681 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884,LOC107598165,LOC107698528,LOC107738519 coding downstream 124290 11051094 ~ 11085910 (-)
fzd5 fzd5,LOC107551950,LOC107733649,LOC107698527,LOC107598163,LOC107738508 coding downstream 164738 11041292 ~ 11045462 (-)
zgc:162396 zgc:162396,LOC107551942,LOC107733630,LOC107663909,LOC107568094 coding downstream 374230 10833262 ~ 10835970 (-)
lcmt2 lcmt2,LOC107663870,LOC107698535 coding upstream 9302 11225956 ~ 11231688 (-)
tlr20.4 tlr20.2,tlr20f,LOC107598181 coding upstream 169723 11386377 ~ 11389378 (-)
LOC122351856 tlr20f,tlr20.2,LOC107598181 coding upstream 175586 11392240 ~ 11396663 (-)
gtpbp8 si:rp71-84d19.3,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 coding upstream 183897 11400551 ~ 11404296 (-)
LOC122352021 hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503 coding upstream 237415 11454069 ~ 11464414 (-)
G69396 NA non-coding downstream 179707 11029377 ~ 11030493 (-)
G69362 NA non-coding downstream 256215 10947044 ~ 10953985 (-)
LOC122351427 NA non-coding downstream 263456 10930480 ~ 10946744 (-)
G69361 NA non-coding downstream 265145 10944439 ~ 10945055 (-)
LOC122352018 NA non-coding downstream 301606 10849823 ~ 10908594 (-)
G69467 NA non-coding upstream 142296 11358950 ~ 11365819 (-)
LOC122351998 NA non-coding upstream 574127 11790781 ~ 11954234 (-)
G69596 NA non-coding upstream 869060 12085714 ~ 12156439 (-)
LOC122351183 NA non-coding upstream 1051458 12268112 ~ 12270147 (-)
G69607 NA non-coding upstream 1063139 12279793 ~ 12280197 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 523573 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 690743 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 766581 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 1300022 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 3115353 8076468 ~ 8094847 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 180012 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 280293 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 874477 12091131 ~ 12194961 (-)
G69650 NA other upstream 1205775 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 1301630 12518284 ~ 12582425 (-)

Expression


Co-expression Network