LOC122351620 (rap2a,LOC100332969,LOC103043765,LOC107549783,LOC103391592,LOC105907999,LOC106512668,LOC106582448)


Basic Information

Item Value
gene id LOC122351620
gene name rap2a,LOC100332969,LOC103043765,LOC107549783,LOC103391592,LOC105907999,LOC106512668,LOC106582448
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4977659 ~ 4985596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248828.1
actttaaatacatataaatggaCGTCGAACAATGGAAAGTGTTAAATCTGAACAGTTTtgtggtaaaaaataaaaattaaattaaattaaataaaaaaggatttaCATGGAATGTAACAACTGTGACTGAgtgattttaaatattggtgtttcatttatttatgtgattgtTTCTGTACTGGGATTTACTCGCTGATAAGCTGTCTGTATATCATATAGATATTagctactgaataaaatattgactGTTAACTAAATAGATACACTGTGCTTTGTTTAACATTAATGAACTGGTTGAGTGTGATCTTTTagtctgaatattttatttttgcagcctGTGTATAATAGTCTATTGAAATTGTTCCGTTTTATTAtcgtctcaaacacacacaatgccGCAGGGTGAAAGTTTACTTTACTTAGACATGTTCGGAACACAGATATCCTGGAAAACAAAACGGCACTACGCGGTTGCTAATGTCCGTGAAAGCAGTAATTACCGAGCCGAGCCACCTACACGAACCCCGTATACCGCGTGTTTCCATAGCAACGACATCCGCCGCGACTCCCGATAGGGTGCGCGCGCAGCCGCCGCTATTTGGGGGGTTTTCGCCCAAACGTTTCCTTACGTCAGTGACAACCGGCTAGTTTTGACTCAAGCGGAAACCCAGCTTCGATGTATATGGTGTCTGGGCGCGGTTTCCGGTAGTCGGCCGGCTATTGGGCGCTTCACGGATCCGTTAACCGACGAGAGCGCTGGCTTCGCCTTCTGTACGGAAGCCGAGACGGAAGAGGCGCAAAAATGTCCGCTTTGATCAAATCGCCTCATTGAGTTGgatcttttaaatgaatcatttaaaccgCTTCACAACATGGAAGGATTTCTTTACTGAATCAATCCGAGCAGTTGTCGAGTCAACGACTCATTGAACCTTTTTAAGCATGAATTGTATGTTAATACAATCATGGCGGCATTAAAccaatacatacataaaaaattgAGACTTAAAGGTTATAGGCCTTTTGAGTTATTGGAACGTATCAATTAATGCTCACAAATGAATGATCATCTACAGAAAACGTATACAAGACGATACAGTTTTTGGTTGAACCTTATTGACACTTTATCAGACTTCTTGAAATCCTGAGATCTAGGCTAATAGTTACTTGTtatcacaaattaaatacaatacaatatgtttttaataaaaaataataaatagataaaatgaaaattaagtaaattaaagcTAGGATATATGTTTCTGCTACGTTAAAACGTTATAATAAAGTTACATAGCCtacctattttattttgtttgcgaAATAAGTTTACATTTTGGGTTTACCCTGTATCTCAGTTCGGGTGATTAAAATGTCGCGATTACGTTTCTAGTTTTATTCTGAGgcggaaataaattacatatctATATCCTTTGTGGTTTTCCCGGCTTATTAATCTTCTCGTGTGATCTTCGCTTAGTAGGCTATTTTGTCTTCTGTCTACCCTTTTTTATGTCTATATTTCTACAATATTTTACTTGTTGAACCTCTGTACAGCACCTTAGTCGGCAGTTTTTATACgtgctatatataaatacattttacacagtAGACTTAAAAAATGGAATCATAAAACCTAAACAATCGCCATCAACCTAAAAAGTGAAGaggaaaaataagaaattcGTATCGTTTCAAGAAACCGGCTATCCCGTTAATATCAAGGACCTAATTACGTCGTGACGAAAAAGAATCAGTGAGTCGCCCTTGAACTGATTCCTTCGAATGAACCGCTTGAAGTAACCGGTTCGCCAAAAAGACTCGGACTTCACAATAGTGGAGCGGCGCGGCGGAGGATCCCCACCCGTGAGCATGGCGGTGTGCTAGTGTATTAATGAAGACCGGAGGGAGACGACGGAGACGGAAAATACTAACATGCTTCACATAATCAGTTTTTAACGGACCGCGTGTCAGTTCACCGATGCCAGAGGCGGTCCGCTGGGTTTCTCCGCGCAGTCTTCGTCTACTTCTATAGGATGGGGAGCTGAGCAGATAAAAAGCACAAGTTATTGGCGACCGCATCTCCCCAGCCGTTCTCCCCGTCGTGAATCGCAGGCGCGCGTGGGCCGCCGGTGCTCCGTGATCATGAAGCGCTGCTGCGGGAAGCGCGTCTTTGTGCGAGGCGTGTTTACGTCCGCGGACAGACTCGTCTAAACGCCCTAAACATGAACGCCGTTGTCGCGCCGAGCGCCGTGTGAGTTTATTTTGATTCGTCGAACCCTTCAGACCGGAGAGATGCGTGAGTATAAAGTGGTGGTCCTCGGTAGCGGCGGGGTCGGTAAATCCGCCCTTACCGTGCAGTTCGTCACCGGGACATTTATTGAGAAGTACGACCCGACGATCGAGGATTTCTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCGGGCACGGAGCAGTTCGCTTCCATGCGGGACCTGTACATCAAAAACGGACAGGGCTTCATCCTGGTCTACAGTCTGGTGAACCAGCAGAGCTTTCAGGACATCAAGCCCATGAGAGACCAGATCATCCGAGTCAAGAGGTACGAGAAGGTTCCCGTGATCCTGGTGGGGAATAAGGTGGATCTGGAGAGCGAGCGGGAGGTGTCCGTGAGAGAGGGACAGGCGCTGGCCGAGGAGTGGGGCTGTCCGTTCATCGAGACCTCTGCCAAGAGCAAGACCATGGTGGACGAACTCTTTGCCGAGATCGTACGGCAGATGGACTACGCGGCACAGCCGGATAAAGACGATCCGTGCTGCTCCTCCTGCAATATACAATAaccccccaacacacacacacacacacacacacactacagtagCTTTGATAGACCTTCTAGTGTCGACGGTTTTCCATCATTCTGTATCTGCAgactgacagttttttttttctttttctcttgtCACTTTAAATCCCGATTGACTCGACCGCAGGAAGAGAGAGCGCTTGCCTTAGGTTTCACGGCTCCTGTTCGAGCGGGATCCTTGAGTGGCCATGAGGCGGACTTTTACGTTCTTGGTCTTACGGTATTGACGATTTTATCTGAATTAGTTGTCACCAgatcaaagagagagagagagagagagagagaaaacaagaggGTTCTTAGCCATATGCTTGATATAGCCATATAATCATTTAATGAAGACTTTAATTGTCCGTTTCTTTGGGAATCGATTCCTCAAAGCCGTCGTTTTTCAGCAGTGTCTCATCTGAAACATGAAAAGGTAGAAAAACGGTGAGAGGACTATAGCTTTGTTCCAAAAACTAGTTCGCCGCCTACTTGGAGAGCATGTTGCCCAAAGTATGTTTGCCTATagtttcccagaatgcaccgcGGCGAGCTCTGAAAAATTTCGTCCGGGCGTTTGCGAATATATTCGAAGCTCATTCCACTCcatgatattttttaaagtaaaattgcaATCACAATACGGGTTTGCGTAGTTATCGAATCACAGGCCGTGGTTTAAATGCATGGATGTGTGTTAGATGTTTCTGAGTCAAATTATGATCAGTTATGATCAGTTTAAAAAACAGACGACGAAGGAGAAGCTTTAAAGTAAGCATGAGGCGCAAGTTATGATTGTATTGTGCTCCCTGTGACTTTTTCGAGGGGcaaaacaaagattaataattCTTCGAGTTGCTAATTCGtacaaacgaacaaaaaacgATACTGTCCCGTCAAATCGTCCCGTTGGCTCTGTAGTAAATGAGCAGTGAGGCAGCTCggtaggttttggaacagagctccCGTCAGAAGTCAGCTTTAGGAGACGAGTTGAGAAGACGGCGACTCTTCATTAGCGTCGCGGCGGAACGATTGTGAACAAAGAACTCTTTGCGACCGAATTGGAGACGCTGTGCTTTGCGCCACTAGCAGCCGTTCTACTAGAGTATCCACAGAGACCACCGTTCATCTGGGGTTTTTAGGTTTGCTGAACATGTCGCGTCGCGCAGCGTGGGACCTCTCGACTCCTCGATGTATTTTGTTTGCTGTATTGTCGAATGTTTGACGGTGTACATCCCATGTCTGCGTCGCCATCCATCGAGAGACTTTCGATTGCACTTTTTCCAAGCAGGAAGGTCAGCTCTCCGAGCGAACGGAACGCGGTGAAGCCCTGTCTCTGATTGGACGGGGACGCGTCTGGACACGGGACTAATTTCTTAGTCAGCTCATATggctctttctctgtctctctcgatTTGTATCACCCTCTTTCTCACGCGTCTCTTCAGCATCTCAGCCCTTTTCTACACTCGTTCTCAATCTTCTGCCATCGATGGTTGTCCGGTCCCCGGTTCTTCTTGGTTTCCTCCTCCCGGCCGGGTTCGAAGTTGGATCTCACGGCTGAACATATAGAAGTTACGGaggtgtgcgagtgtgtgcgtTTGAACAGAGAGCTCTGAGTCagtattgattttatatttttttatgtggacCCGTGCTCAACTCTCCTGAACGACTGAATGGTgacactcttttttttgtatgtttggcACCTAAATAAAGTGCATCTGACACTCA

Function

symbol description
rap2a Enables GTPase activity; guanyl ribonucleotide binding activity; and magnesium ion binding activity. Involved in several processes, including actin cytoskeleton reorganization; microvillus assembly; and positive regulation of protein autophosphorylation. Acts upstream of or within establishment of protein localization. Located in plasma membrane and recycling endosome membrane.

NR:

description
ras-related protein Rap-2a

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07837 RAP2A; Ras-related protein Rap-2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248828.1 True 4601 mRNA 0.45 2 4977659 4985596

Neighbor

gene id symbol gene type direction distance location
zmp:0000001200 dock9,LOC107689489 coding downstream 56103 4870192 ~ 4921556 (-)
slc15a1a LOC107752613,LOC107689491 coding downstream 108426 4860892 ~ 4869233 (-)
stk24a stk24a,LOC107560805,LOC107747230,LOC107670316,LOC107561729,LOC107689524,LOC107752612,LOC107705591,LOC103357793 coding downstream 117993 4852949 ~ 4859666 (-)
casp10 LOC107560797,LOC107561720 coding downstream 185920 4781700 ~ 4791739 (-)
prkra LOC107747227,LOC107670311,LOC107560808,LOC107561731,LOC107689486 coding downstream 196982 4774995 ~ 4780677 (-)
tmem37 tmem37,LOC107752614,LOC107689494,LOC107747239,LOC107670320,LOC107560813 coding upstream 22589 5008185 ~ 5009514 (-)
steap3 steap3,LOC107689493,LOC107747243,LOC107549780,LOC107752579 coding upstream 31472 5017068 ~ 5022355 (-)
insig2 insig2,LOC107549777,LOC107689500,LOC107720943,LOC107670326,LOC107549914,LOC107752584 coding upstream 136611 5122207 ~ 5128098 (-)
ybey ybey,LOC107670327,LOC107720944,LOC107689501,LOC107752586 coding upstream 152518 5138114 ~ 5139999 (-)
LOC122351912 LOC107670332,LOC107549921,LOC107689507,LOC107752589,LOC107549740 coding upstream 311910 5297506 ~ 5319587 (-)
G67847 NA non-coding downstream 23577 4944603 ~ 4954082 (-)
G67747 NA non-coding downstream 341317 4636010 ~ 4636342 (-)
G67730 NA non-coding downstream 421909 4552424 ~ 4555750 (-)
G67733 NA non-coding downstream 425784 4551237 ~ 4551875 (-)
G67712 NA non-coding downstream 550013 4427288 ~ 4427646 (-)
G67904 NA non-coding upstream 19698 5005294 ~ 5006781 (-)
G67911 NA non-coding upstream 41448 5027044 ~ 5027597 (-)
G67913 NA non-coding upstream 64833 5050429 ~ 5051292 (-)
G67923 NA non-coding upstream 103586 5089182 ~ 5089393 (-)
G67928 NA non-coding upstream 114310 5099906 ~ 5100777 (-)
LOC122351456 LOC107747234,LOC107560802,LOC107670305,LOC107752600,LOC107689492,LOC107549748,LOC101883674 other downstream 3704 4856650 ~ 4973955 (-)
LOC122351499 LOC107670334,LOC107747232 other downstream 154694 4792424 ~ 4822965 (-)
pde11a pde11a,LOC107657382,LOC107671328 other downstream 311005 4615842 ~ 4666654 (-)
wipf1a LOC107657348,LOC107600727 other downstream 827420 4142290 ~ 4150239 (-)
G67668 NA other downstream 855556 4120463 ~ 4122103 (-)
dbi dbi,LOC107560815,LOC107747240,LOC107752581 other upstream 24917 5010513 ~ 5014813 (-)
G67912 NA other upstream 43330 5028926 ~ 5029475 (-)
G67930 LOC107670337 other upstream 120298 5105894 ~ 5108387 (-)
LOC122351925 NA other upstream 364359 5349955 ~ 5369589 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other upstream 411269 5396865 ~ 5399880 (-)

Expression


Co-expression Network