raph1a (raph1,raph1a,LOC107752894,LOC107592998,LOC107688759,LOC107668371)


Basic Information

Item Value
gene id raph1a
gene name raph1,raph1a,LOC107752894,LOC107592998,LOC107688759,LOC107668371
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7962407 ~ 8017887 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248834.1
TAGGGCGCAATCACATGGATTTCGGGGCTGGACAGGAAACGGAGACGCCAGGAACGCGCATCGCTCCGCAGCTCAGAACGGGAATGGAAGCGGGAGAGGAACGGGAGGCTCGCTCGTCTCATCACCACCCTCATCCTCGGCGAATATAAGCGATCGGCGCGGGAAGCGAAAGCCCGATCGAGGCGGACAGGAGCGGGGAATCTATCGCTGGATTTGCGCGACACGCCAGTGGCTTTCCCCCCATTGTTAGCGTTTCCTTCGCGCAAGACAGAAGCCGCAGAACCGTCGGCTGGTTTGCGACAATGGAGCAGTTTTCGGATGACGAGCTGGATCACGCTGCAGAGGAAGACAGCGATAAAGAGGACCAGGACCTGGACAAAATGTTCGGAGCATGGCTGGGAGAGCTGGACAAACTGACAAAGAGTCTAGATGACGGGAGACCGGAGAAGGTGCAGAAAGCACCTCTCAGACAAGAGACGAACATGGCCAACATGGCCTACCGCTTCTCCATTTATAACATCAACGAGGCTCTGAACCAGGGTGACGCAGTGGACCTGGATGCTCTGATGGCGGACCTCTGCTCCATCGAGCAGGAGCTCAGCACCATCGGTAAGCCTAGCAGCGCTTCCTCTCGCCTTGGCCTGACCGGGGACACCAAAGTGCGTCAGAAGCCCCCGGCCGGACGCAGTCACAGCACCAAGCACACGGGCAGCAGCAGCGGCGGGGCGAGCAGCAGCGGAGGCAGCACCAGCAGCAGCACCCGCGCCTCTCCCGCGTCTACCGTCAGGGTGGGCAGCTCCAGCAGCAGACCCCCGCTGGCATCCAACTTCTCCCTGGATGATATCACGGCCCAGCTGGAAAAAGCCTCTCAGAGCATGGACGATGCAGCAAGGCAGAGCTCCACATCCTTCGGCTCTGCCATGTCAGCACCGTACTCTTCCTCCACCGTGCGCAGGCCGACCTCCCATCATCATCACCGCAGGACGGGGTCGGTGGGTACGGTCACCGAGCATGAGGTGCGGTCCTTTGTCCATTCCTCTCGCTCTAGCATTAACTCGGCCTCTGCATCCAGCATGGACTCGCTAGACATCGAAAAACCCAAGTCCGATCAGGACGGGTTGCAGGACGGACAGGAACAGCCGAGCTCAGAGCACTCGTATCTGGACAGGGAGACTTCTCTCATTCTGAAAAGCATTGCAGGAAAGCCCTCTCACTTGCTGACCAAGgAAGAGCAAGCTGCCAAACAAAAAGCTGAGAAGATCCGAGTAGCTCTGGAGAAGATAAAGGAAGCACAGGTGAAAAAGTTGGTAATCCGAGTGCACCTATCAGATGAAAGCTCGAAGACTATGATGGTGGATGAGAGACAGACGGTGCGTCAAGTGCTGGACAACCTGCTGGATAAATCTCACTGCGGTTATAGCCTGGACTGGTCTCTGGTGGAAATCATCTCTGAACTCCAGATGGagagaATCTTTGAGGACCATGAGAACCTGGTTGAGAACTTGTTGAACTGGACCAGGGATAGCACCAACAGACTGATGTTCATCGAACGCATTGAGAAATATGCACTTTTCAAGAACCCTCAGAACTATTTGCTGGGGCGCAAGGAGACGTGTGAGATGGCAGACAGAAATAAAGAGGCTCTTTTGGAGGAGTGTTTTTGTGGAAGCTCTATAAGTGTGCCTGAGATGGAAGGGGTGCTCTGGCTCAAAGACGACGGCAAGAAATCTTGGAAGAAGCGCTACTTTCTGTTACGAGCCTCTGGGATATATTACGTGCCAAAGGGTAAAGCCAAGGCCTCTAGAGACTTGGTTTGCTTCCTGCAGCTGGATCATGTTAACGTGTACCTGGGGCAGGACTACCGCAGCAAGTATAAAGCCCCAACTGACTACTGCATGGTCCTGAAGCACCCACAGattcaaaaaaaatcacagtacaTCAAATACCTGTGCTGTGATGATGTCAGAACGCTGCATCAGTGGGTCAATGGAATACGCATTGCCAAGTACGGGAAGCAGCTGTATGTGAACTACCAGGAAGCCATGAGACGCACAGAGGCTGCTCATGACTGGTCCTCCCTCTCCAGCTCCAGCATCAAGTCTGGTTCCAGCTCCTCCAGTCTACCAGAATCCCAGTCCAACCACTCAAGCCAATCAGACAGCGGTGTGTCAGAGACCACCTCCTCTGGTCACGTGCGCTCTCAGAGTGTCGTCAGCTCCATCTTCTCTGAAGCATGGAAGCGAGGAAATCAGACGGATGAACCCAAGATGAGAATGGATGGCCCACCACCACAGCCTACTAGAGCCTCTTATCCTCTTCAACTTCCTCAGCTACCCCAGTCTCTCCAATCTCGTAGCAGCTACAGTGGTGTGTCCCCAGTTTCCCCCTCCTCGCCCCCATCTCCACCACCGCCTCCACCACCTCCCCCTCTCCCCAACCCAACGCACCACTCCACCCCGGTTATGTTCACTAAATACAGCACCCTCGCTAGGTTGCAAAACATCTCCCAGGCTCCAAATCATTACAAACAGACCCCCTTATTGGCAGCACAACAGCAACCCATGCCCCCAACACCCCCACAGTGTCTCAAACCTGCAATGAATAATACGACAGACACTGCCAGCAGTCCGCCTCccccaccaccaccacctccagAGGTGCCAGTGCCAGGGTCAGCCATGGCGGTGTTGAAGCATGCCCCCGTCAGCCCCCAATATGCTCCCCCTCCACCTCCAGAGGAAGACCAGCTGCCACCCCCACCTCACCAACACAGCAATGGCTACTTGCCTCCACCACCACCCCCAGAACAGTTAAAGTACCCGCCTCCCCTCAGCACCAACGGGCTCCAGCAGTTCTTAGCTCAGAAGTTCCCTAACATGACCTATGACTTCTCATCTGTCCAACAAGACGAAGAgcctccaccacctcctccgGTGTGTTTCTCTCCAACCCCTCAGCAGTCAGGTCCACCTGCCCCACCTAAAACATTCACTGGTGGATTTCCACCCCAAACGGCTCCGAAACCCGCTCACGGCATTTCCCCCATTTGCCCTGTGCCACCTTCTTTGTCTCCAACCCCTCCGGCCACCATGAAGAAACAGCAAAGCCTCTCTAGCGGTCACAGCCCCAATCAACCTCCACCTACCCTCCCCAAGCAATATAGCCTTTCTTCCAAAGCTACATCTGTGTCTGCCCCCATCTCTCCCACCCAATCGCTTGTGAAGCAGATTGTAAACCAGTTCCCTGACGCACCTGATGGATCCAAAGGTCCCATATCTCCTCCTGTGGTAAAAACCAAACCGAAATGGCAGCCGGGAGGGCAGGCTCAACCACAATCTCCCGAAtttcctccacctccaccagaGAGTACCCTTGAATTCCCTCCACCTCCTGCTCCAAGTCCCCCTCCTGCCCCACAGCCTTCTGGCAAGACGGGATCTCCAATCAAGAAGTCTCCATCAACGTCGTCAAACTCTTCTACTGGTTCAGGAGGAAAGAAACCCCCTCCAACTCCACAGCGGAACTCCAGCATGAAGTCCACTTCTTCTGTTGAGTACCAGGAGTCCAAGAAAGTGGAGGATCTGGTCAGCATGTTTGCCCAAACCAGTCAAGCCCCACCCAGTTCCTTCTCAACTCCATCCTCTACAACAGGATCGCCTTCCAAGGACACCTCCACCGGACCTCGCGCACCACCAAAACCAGGCAAGATCAACTTGGCTAATCTGCCTCTGGCTCTCCAGGGAAAACAAGGTCAATATCAGCAATCCAGCACAGACTTCCCTTCTCCTCCTCCCGAATGTGACTTTCCCCCTCCGCCGCCGGACTCAGAACTCCTGCCTCCTCCACCTCTCCCAACAGAACTGCACACCGGGGCTCCCAAAGTGGCCGTGGTGAACCCTCAACCCCAGCACTCCTCCAGCTCCACATCCTCATGGAAGCAAAGCTCCTTAAAGAAAATGCCCCCTCCGACTATGCACCGGCGCAGCAGTGGCCCACCCGAACCGCTTGTCCTTTCTCCACCTCCTCAACAGATGCCTCTGTCCTCTTTTAACTCTCAGATCCCACCAACTTCCCCCAAGGCCAGTCTGTCAGTCCAGCCCAACTTCTTGGAAGACCTCAATAGAACTCTGAAAAGGAAGTCCATGACTCGACATGGCTCCCTCACATCCTCGAGGATCTCAGCCAAGCTGGAGCCGGTAACAACCATGGACGATATGGCCCTTCCGCCCCCTCCTCCAGAGCTGCTGCTGGGCCAGCAGAAAAAGGGCGGATACATGAGCGCCAACATCTCAGGCTATGCAACATTACGGCGGGGTCCTCCGCCGGCGCCACCCAAACGGGACCAAAACACTAAACTGACAAGCGAGTGGTAGTTGGGACATGTGCCGAGTACGGATATGCCACTCTCCTTTTCCACTCTGTTTATCTTCAACAGCTGAAACGTCTGCATTAAAATACAACTCATTTTAACCCCAGATTATAACCACAATAAGAAAAAGCCAAACCATCTATACATAAGCTTCTCTGCGTGTTTGTGCTGCTTTGCTATTAAGTGTAGcagatatacaaaaaaaaaaaaaactgagaaaaagagaCTGACATTGTTATTATAGGTACTGCATGGACACTGCTGTGAGGAAAGGggataatgtatatgtatgataaaatatatatgtggaACAGTGGGGTGGGAGGGGAACTTGtacttttttatatgaaattatttaatacctgaaatatattcttattttaaagtttagttttgAAACCCTTGACTGTAAACGTTAAACGTGAATAGAAAATCAGGGTTGTTGAACCGAtgcttgtgtgtgcgtgcgcgcatTTCGTCTGAGTGATTTGGTTGATCCACTCTCAGAAAAACAGCGAGGGGCTGGGTGATAGTGCCTCCCTTGCTTGTCATTAGATGTGCAAATCCCAGTGTGGGAACTACACCTGTGTAGCATACATTCTAAATGAAGTATTCTACCAAACTTtccacatttaatttaaatggtttaGAAACTTCCACTTAAAAtgtcaagaaagaaaaaaacagctacCATTGTTATTGATGAATCTGTTATGTTGTGTCGCTGTGGACCCTTACTTTTCATGAAGATGTCCAAATGTTAGATGAAAATGAGCCTGTTGCCGCTCGAGTACATCTCAGCGTGTATCTGGCCTGTGGATGGGATGTGATGTCTGTTTATGTTGGTTACATTTGCTATCTATCTGTACATACAGCTGCAGTTCCTGACTTTATCAATGTGCGTTAGCTCTGCATGAGTGAAACACACACTAGGAAGTGATGTCGTTCTCTTTTTTTGACCTCTGTCTATACTCAGTGCTGTATTGAAGTGTGTCACATATCTGGATCATCTATTTCTCATGTCATGGCAATGCCACAATGTACTGACGTTAATCTAGCATGCATGCTTCCATAGTATGGTTGCCTAAGATTGAACACTTTGTAGGGTTTTAGGACCATAGCCACAAAATAAAAGGTGTCATGTCAAGTTTACTTGACTtacaatgcaaaaaattca

Function

symbol description
raph1a Predicted to be active in cytosol and plasma membrane. Orthologous to human RAPH1 (Ras association (RalGDS/AF-6) and pleckstrin homology domains 1).
raph1 Predicted to be involved in signal transduction. Predicted to act upstream of or within axon extension. Located in cytosol; nuclear body; and plasma membrane.

NR:

description
PREDICTED: ras-associated and pleckstrin homology domains-containing protein 1-like isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K23488 RAPH1; Ras-associated and pleckstrin homology domains-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248834.1 True 5546 mRNA 0.52 17 7962407 8017887

Neighbor

gene id symbol gene type direction distance location
fer1l6 fer1l6,LOC107752896,LOC107596537,LOC107738098 coding upstream 23905 7921678 ~ 7938502 (+)
prkag3b prkag3b,LOC107738101,LOC107596559,LOC107752899,LOC107668376 coding upstream 41845 7908087 ~ 7920562 (+)
ttll4 LOC107738099,LOC107688755,LOC107752897,LOC107596548,LOC107593000,LOC107668375 coding upstream 55103 7893615 ~ 7907304 (+)
abcb6b abcb6b,abcb6a,abcb6,LOC107688753,LOC107596549,LOC107716755 coding upstream 81373 7855221 ~ 7881034 (+)
nrp2b nrp2b,LOC107688766,LOC107752901,LOC107668386,LOC107716756,LOC107596550 coding upstream 140513 7756774 ~ 7821894 (+)
fzd7a fzd7,fzd7a,LOC107751502,LOC107752890,LOC107668396 coding downstream 152279 8170166 ~ 8172963 (+)
LOC122351256 LOC107668397,LOC107593014,LOC107752910 coding downstream 158948 8176835 ~ 8202936 (+)
ankzf1 LOC107677786,LOC107749886 coding downstream 325335 8343222 ~ 8349525 (+)
myo10l3 LOC107677785,LOC107749884,LOC107752883,LOC107668373 coding downstream 348775 8366662 ~ 8426929 (+)
pttg1ipb pttg1ipb,LOC107749904,LOC107677780,LOC107596555 coding downstream 409959 8427846 ~ 8430614 (+)
G68446 NA non-coding upstream 108129 7853481 ~ 7854278 (+)
G68435 NA non-coding upstream 626048 7335491 ~ 7336359 (+)
G68397 desma,LOC107688742,LOC107602901,LOC107716787 non-coding upstream 660912 7280767 ~ 7301495 (+)
G68424 NA non-coding upstream 698694 7262541 ~ 7263713 (+)
G68401 NA non-coding upstream 703013 7256680 ~ 7259394 (+)
G68668 NA non-coding downstream 185966 8203853 ~ 8205963 (+)
G68678 NA non-coding downstream 204700 8222587 ~ 8222817 (+)
LOC122351403 NA non-coding downstream 582837 8600724 ~ 8614984 (+)
G68808 NA non-coding downstream 808325 8826212 ~ 8827046 (+)
LOC122352063 NA non-coding downstream 841586 8859473 ~ 8860379 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 1989284 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 2076654 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 2504878 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 2505144 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 2505564 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 323408 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 413224 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 442857 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 845500 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 849210 8867097 ~ 8871633 (+)

Expression


Co-expression Network