wdfy2 (wdfy2,LOC107725248,LOC107685482,LOC107723695,LOC107695578)


Basic Information

Item Value
gene id wdfy2
gene name wdfy2,LOC107725248,LOC107685482,LOC107723695,LOC107695578
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13411787 ~ 13419851 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248841.1
CATGCATCTGTGATTCATTGAAGAGTCGGATCGTCCGTGTACGTGGAGAACGAGAGGACGGCGCGCGCGGCGTCGGGGGCCATGGCATAGAGATCGTGTTTGAGCGTGACCAGCGCAGGCCGGGAGACTTCATCAGCTGACCCGCAGCATCCCTGACCGACTGCAGGTCTGATAGTCGACCTGCGCTCGGCGTGTTATGCTGCCGAGAGAGGACTCGGGTGACGGAGGAACTACAGCGCCATGGCGGCAGAGATCCATCCCCGTCCGCAGACCCGAAAACCCGTCCTGCTGAGTAAGATCGAGGGTTTTCAAGATGTGGTGAATACGGCTGTGATCATCCCCAAGGAGGACGGGGTTATCAGCGTATCTCAAGACAGGACAATCCGTGTGTGGCTGAAGAGGGACAGTGGTCAGTACTGGCCCAGTGTCTTTCACACAATGCCAGTGGCGTGTTTATGCATGTCATTTAATCCAGAAACAAGGAGGATATCTGTAGGGCTGGAAAATGGCGCGGTATCGGAGTTTGTTTTATCAGAGGACTACAACCAAATGACTCCTGCACGAACATATCAGGCTCATCAGGGTGGCGTGACCGTGGTGCTGTTTGTCCTAGAGATGGAGTGGGTTCTAAGCACGGGTCAGGACAAGAGCTTCACGTGGCACTGCTCAGAGAGCGGACAGCAGCTGGGCTCGTACAGGACCACGGCATGGGTGTCTGGACTACAATTTGATGTGGAAACCAGACATGCCTTCGTTGGAGATCATTCCGGTCAAGTGACGATCCTAAAGCTGGAGCAGGACAACTGCAGCCTGGTCACCACCTTTAAAGGCCACACAGgCAATGTCACAGCCCTGTGTTGGGATCCTGTCCAAAGGGTTTTATTCTCCGGAAGTTCTGATCATTCAATCATCATGTGGGACATTGGAGGCCGTAAAGGCACAGCCATCGAGCTGCAGGGACACAAtgatAAAGTGCAGGGTTTGTGTTACGCTCCTCACACACGTCAGCTCATTTCCTGTGGCTCAGATGGAGGAATAGTTATCTGGAACATGGATGTCACACGACAAGAGACTCCTGAGTGGCTCGACAGTGACTCGTGTCAGAAATGTGAACAGCCATTCTTCTGGAATTTTAAACAGATGTGGGACAGCAAGAAAATTGGCCTGCGACAGCATCACTGTAGGAAGTGTGGCCAGGCCGTGTGTGGAAAGTGCTCCTCTAAACGCTCCACCATTCCTCTAATGGGATTTGAGTTTGAGGTGCGGGTTTGTGACAGCTGTCACGACTCCATCACGGATGAGGAacGTGCGCCCACTGCAACATTCCATGACAGTAAGCACAGCGTCATACACATGCAGTATGAGCCAACCAGGGGCTGGCTGCTCACCTCCGGGACAGACAAAATCATCAAGCTATGGGACATGACTCCGGTGGTATCGTGAGAATCCCGTGTAACGTCTGCAAGCAGGAACTAAAAATCGGCGCTGAACCGGAACCGAGAATCATGTGTTTGTGGAAAACGTTCAAAGTTCACGTCACTTTCCATGGGCAGCTTCATCTCATGGAGGAAAAACTCAAGGATGTCCTGATATTGAACTGAGCATGTGCATTTGTATGTATCTGTGCATGTGCACGTGGGTTATGGGAACAAACGTGTAAATACTGTCCAGTTTAAATCTGCTTAGTTCAGGTTGTTTATATTGACCAGTGTTGTTACGGTGTGTCGTCTCTGAAACTCCTCACATTCTAATATCATCTTATGTCTTATCCTAAACGTGAGTGAATCCTTGTTACACTGCATCAAAGCATGTTGGAACTGTTTTATATTCAAGTGCCTTTACCGCAGCTCAATCGGTGGTTTTGGCATGGTTAAATAGTATCTGCTATTGCATCCTATTTGACTCTTTAAATGTAAGCACTTACGTTCCAGCAAATTTAATCGGAGGATTTAATGTGCACGTAATCACAAATGCTATTGTTTACACAGGGTGAAATTTAATAATGCTTCATTATAATGATATCGTGTTTGATCTTATTAAAGCTGATGTTTCATAGGCATGTCATTACTGTAAGAAACATGgcatttcattctttctttggATCATATATTATGGTGGCGATTTAATACGTACTTTAACTTTATTTGTCAGGTGTATTTGTTTTTGCGGTGGCCATTGTGAATGGCTCATTATGGTACGGATTGATAAAACTGGCACAAAacaaatatgctttactttgtAACTGCGTAATTGCAAATGTGGAAGTTGGATTGCATACTAGCTTTTAAAAAAGGATGAAGTTGACAGAAAGGTTCATTGTAagtatatttgatcaaaaatacagtaaggcAGTAACACTGAAATGTTTACAGCTTAAAAGAACGGTTttgtatttcaatatatttaaaatataatttattctcttTGATCGCAAAGCTCAGTTTTCAACAGTTTGGTGtgatcagaaatcattctaatgtgctgatctGTTGCTCAGAAAACACTGTAAAGagtaatgtaatgaaaacagTAAGTGCTACCTAATTATTTATGTGGAAAAATGGATGCATTTggtgattctttgatgaaagaaaagcatttaccTGGAAAAAGaaatcttgttaaaaaaaaaaagtaatgatttcttgtaagaataaaaaatattactgaccctagtttttttttaatggtagtataaatgataataattggagtgaaagtctttttttcagtttgaattaAACGTATTGTTTTTTGTCAGTTTA

Function

symbol description
wdfy2 Predicted to enable metal ion binding activity. Predicted to be located in early endosome. Orthologous to human WDFY2 (WD repeat and FYVE domain containing 2).

NR:

description
PREDICTED: WD repeat and FYVE domain-containing protein 2 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K23532 WDFY2; WD repeat and FYVE domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248841.1 True 2765 mRNA 0.44 12 13411787 13419851

Neighbor

gene id symbol gene type direction distance location
serpine3 serpine3,LOC107555035,LOC107567776,LOC107725220,LOC107695567 coding upstream 11675 13386660 ~ 13400112 (+)
LOC122352182 LOC107685564,LOC107723675,LOC107725243,LOC107695580 coding upstream 25294 13371593 ~ 13386493 (+)
asb18 asb18,LOC107723656,LOC107686685,LOC107567774 coding upstream 40860 13363066 ~ 13370927 (+)
LOC122351698 col6a3,LOC107685998,LOC107723650,LOC107695585,LOC107725234 coding upstream 63214 13260261 ~ 13348573 (+)
LOC122351699 LOC107567775,LOC107739950,LOC107670696 coding upstream 133191 13275992 ~ 13278596 (+)
trnal-caa NA coding downstream 3863 13423714 ~ 13423826 (+)
esyt3 esyt3,LOC107685117,LOC107723684,LOC107695576,LOC107555067,LOC107725232 coding downstream 5339 13425190 ~ 13433984 (+)
parp9 NA coding downstream 24404 13444255 ~ 13449599 (+)
ndufa10 ndufa10,LOC107684997,LOC107567779 coding downstream 36264 13456115 ~ 13460454 (+)
sh3bp4 sh3bp4,LOC107684539,LOC107555364,LOC107723680,LOC107658300,LOC107555062 coding downstream 189576 13609427 ~ 13622795 (+)
G69796 stk17b non-coding upstream 277948 13130098 ~ 13133839 (+)
G69789 NA non-coding upstream 303955 13107595 ~ 13107832 (+)
G69783 NA non-coding upstream 305030 13106280 ~ 13106757 (+)
G69723 NA non-coding upstream 571636 12837719 ~ 12840151 (+)
G69718 NA non-coding upstream 637937 12773334 ~ 12773850 (+)
G69985 NA non-coding downstream 95838 13515689 ~ 13518237 (+)
G70021 NA non-coding downstream 249255 13669106 ~ 13669444 (+)
G70029 map3k19,LOC107684057,LOC107723646,LOC107555330,LOC107725236,LOC107658294 non-coding downstream 265945 13685796 ~ 13686466 (+)
LOC122351436 LOC107555330 non-coding downstream 266814 13686665 ~ 13689033 (+)
G70032 NA non-coding downstream 272363 13692214 ~ 13692487 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 107196 13289693 ~ 13304591 (+)
G69755 NA other upstream 425809 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 608379 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 782252 12627535 ~ 12629535 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 959422 12434988 ~ 12452365 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other downstream 256312 13676163 ~ 13684835 (+)
LOC122351767 NA other downstream 1167231 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 1981276 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 2288350 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 2314719 15734570 ~ 15789702 (+)

Expression


Co-expression Network