LOC122351640 (LOC107719827)


Basic Information

Item Value
gene id LOC122351640
gene name LOC107719827
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15966763 ~ 15973561 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248860.1
TAACCAATTTTACTAACAAATGGTAGCGGCGTTTTCACATGCACTAAAATTCTCTGTACATCGTGCAGTTTTAAAGGAAACGAAACCGAAACTTAGTCTACAGCAAAGCCCTCATTTCAGGATAAACTCGCAGCGGTGCAGTAGCTGGAACATTATTCAGAAATGTCTCCATCTGGTTCCTCAAAGAGGGGGAAAACAACCAGTGGTCTAAACCGACACTACGAAGAAAGGGTGCGACCATGCATTGACCTAGTGGACTCTCTCAGGTCCTTAGGTGTTGAAAAAGACCTGAACCTGCCAGCTATTGCTGTCATAGGTGACCAGAGCTCAGGGAAGAGTTCAGTGTTGGAAGCCCTGTCTGGAGTGGCCCTTCCTAGAGGAACAGGTATTGTAACACGATGTCCTCTAGTGTTGAAACTGATGAGGGTTTCAAAGGATGCAACTTGGCGAGGACTGTTGTCATATAAGGACCAAATAAAGAATCTAAAAGCCCCAGCAGATGTCGAGAATGCCGTCTTAAATGCTCAGATAGTTTTGGCTGGAACAGGTGAAGGGATCAGTCATGAGATGATCACTCTGGAGGTCCAGTCCAGTGATGTTCCTGACCTCACACTCATCGACCTGCCAGGCATTGCTAGAGTTGCCACTGGAAACCAGCCAAAAGACATAGAGAAACAAATAAAAGATCTCATTGAAAAGTTCATTAAAAGACAAGAGACCATCAGCTTGGTTGTGGTGCCTGCAAACATTGACATCGCTACCACTGAGGCTCTGCAGATGGCCTTCAGAGTTGATTCAACGGGACAAAGGACCCTGGGTATTCTGACTAAGCCAGACTTAGTGGACAAAGGCATGGAGGAGCTGGTGGTCAGAACGGTCAATAATGAAGTAATACAACTGAAGAAGGGTTACATGATTGTGAAGTGCCGAGGCCAGCAAGACATCAACGAGAAGCTCGATCTGATCAAAGCtctagaaaaagagagacatttTTTTGACAAACATTCTCATTTTAGGTCTCTTCTTGAGGATGGAAAAGCTACAATACCCCTTCTTGCAGAAAGACTCACAAAAGAGTTGGTTCAACACATTACTaaaacgCTGCCGCAGTTACAGAATCAACTGGAAGTGAAACTAGAGAAGACATCTGAGGAACTTAAATTACTGGGAGATGGTGTTCCTTTAGATGAAAATGAGAAGAGCAATTTTCTGATTACgAAAATTCGTCAGTTCAATGATGCAATTGATGGAGTAAAGAAGGCAGAGGAAGATCTAAAAAACACAGATGTGAGGGTCTTCACTAAAAGCAGGCAGAAATTTGGAAAATGGAAACAAATCCTAGATGACAAAACCATTAAGACGGAGGAAACTCTCAGAGATGAAGTAACAGAGTATGTTAAGAATCGTAGAGGAAAGGAACTTCCTGGATTTGTGAGCTATAAAACATTCGAGAATATTGTCAAGAAATACATTGAGGAGCTTGAGGAGCCTGCTGTAAAGCTCCTAAAAGACATCACTGACATCATTCACACCTGTGTGGACCACACCGTTAATTCTCATTTCAATGCCTTCTCTAACCTGTTGAGGGCTGCAAAAGATCCAATTGAAGATTTTCTTGAAGAGCAGTTTCAGAAATCTGAAGAAAAAATCCGTTCTCAATTCAAAATGGAGAAGATTGTTTACTCTCAAGATGTTCTCTACAGTCACCAGCTGGatgatgtaaaacaaaaaatctttcCACCAAAGGTTTGGCCATCATATTCAAGTGTTAGTGCAGATGTACGTGAGATGGGACAGCATCTCACTGCGTATTTCAAGaTTACCTGTGACCGTCTGGCTAACCAAATTCCACTGATAATCCAGTACCACATGCTGGACCAGTACCTTTCTCAGCTTCAGAATGCAATGCTCGCCATAATTGGGAGGAACAATCCAAGAGTCCTGCTCCAAGAAGATTCTGGTGTTGCACGTAAAAGGAAAGAACTAAAAGAGCGATTGGAGCGCCTGAGGAACGCAGGCAAAGTCCTGTCCAAATTTGTGCATTCTGCATAATTGTGCTCTGTTGCTGTTCCAGCCCGAGAAGCCTCCgagtcaatttgctcaaaaTTGTAAGGAATGTCAGAGTGCGTGGAAACTCCTCATTTATAGTTTATCTGTTAacatgaaaaacttttttttcaatagcCTACCGCCTACCTGTTACTGGTCTTTTTTTAGATAACAAAAATAGTAAAGCAACCTGAAATGGAATTGTCTTATCATGGTGAAAGATGATGAGCCATTGTCCTTTCAACAGCAAATAcgaaaattaaagaaattaactaATTGTGTATTTCAAATACTATTCTAATTACTTGGtaaggttttgttttatgttgatCATTTCTAATTTGATTCTCCAATAATCTTACCAAGgctttcattttacattttttttacatttctattacaGAATTACAGAATTTCAGTTaatataatgtgatttattatatCTATAACCTGCAttatcaaataaatcatttacactgaaaaatacaACTGCATTGTCATTTCAGGCAGGTCTTTCTTATAAGAATTGTAACCCAAACTATTGCatgtttgtgaaagaaaaactataaaactatagTGTTTTAGGcaaaatgtttgtgaaatatattgTAGAGGAGGTCACAACATTGAtctcattttataatttagctgcttttatgcctttttggaatgttgttgctgttgtattcaaacatattttatatatatatatgtgtatattttccATTACCCACTTGTCAAATTCATCCATTGCCTTCAGCTTCTTGCAGAAAGACTCACAGAAGAATTGGTTCAGCACATTACTGTATGTGGGCTGATCCGAGTTGCTTGGTTATGGTTTTTAGTGTTCTGgttttgattttgaatatttttgaatatttatgtacacactatatgtatgtttaaataaatactgaatttCTTTCTAAAAAGATTGAATCAgtccaaacaaaaaacaaatgaaatgtataatggTGTGTTTTACCTTTTATGATTGAAtgctctgttttatttatagacATTGTTCATTGCTGTGTAAAACGCAATGTTGGCTTTCATTTCAAGGCCTTCTCTCACCTGTTGAGGGCTGCTGTTGGTCTGCATCTGTCTATGCAGTTTTAATTGGATGcaatttgtatgcatttgtagATTACCTCTGTCCGACTGGCTAACCAAATTCCATTGATAGTTCAGTACCAAATGCTGGACCAGTGCATCTCTCAGCTTCAGAATGCTATGCTGGCCATAACTGGAAGGAACGATCCAGGAATACCGCTCCAAGAAGATTGAGCTGTTGCGcttaaaaagaaagaactgaAAGAAAGACTGGGACGTCTGAGGAGCGCAGGAAAGGTCCTGTCCCAAGTTTGTGCATTCTGCATAAGCGTTGAGATTATGATGTTGGTTTGTGTATGTTGCTTAGCTCAGAATTGCAACAGGGTGTCAaattttggccggtttaagaaGAAGTTAAGCCAGTTTTTGTGTAAATTTCAAATGAACTGTAATGTCCTggaaactgcaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: interferon-induced GTP-binding protein Mx-like

GO:

id name namespace
GO:0009615 response to virus biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248860.1 True 3638 mRNA 0.38 12 15966763 15973561

Neighbor

gene id symbol gene type direction distance location
gatd3 zgc:112056,LOC107731744,LOC107570103,LOC107595889,LOC107659887,LOC107690602,LOC103039907,LOC105908687,LOC108412974,LOC106582488 coding downstream 296 15963794 ~ 15966467 (-)
olig2 olig2,LOC107659900,LOC107719825,LOC107595891,LOC107731746,LOC107569749,LOC107690629 coding downstream 23673 15940890 ~ 15943090 (-)
olig1 olig1,LOC107731749,LOC107569756,LOC107683299,LOC107719828,LOC107659903,LOC107595892 coding downstream 34227 15930621 ~ 15932536 (-)
ercc1 ercc1,LOC107570013 coding downstream 53193 15909284 ~ 15913570 (-)
LOC122351156 LOC107731741,LOC107569997 coding downstream 59196 15906028 ~ 15907567 (-)
hpxa LOC107690487,LOC107719811,LOC107595840 coding upstream 1004 15974565 ~ 15978301 (-)
LOC122351503 LOC107731735,LOC107690619,LOC107690492,LOC107595881,LOC107570033,LOC107719821 coding upstream 24580 15998141 ~ 16006044 (-)
fhip1b fam160a2,LOC107690600,LOC107731760,LOC107690485,LOC107569793,LOC107719813 coding upstream 32619 16006180 ~ 16024933 (-)
casq2 casq2,LOC107569839,LOC107690483,LOC107595834,LOC107756748,LOC108432573 coding upstream 119169 16092730 ~ 16097066 (-)
slc5a3b slc5a3,LOC107748166,LOC107673698,LOC107569828,LOC107690482,LOC107595832,LOC107756792,LOC568338 coding upstream 133198 16106759 ~ 16116264 (-)
LOC122352066 NA non-coding downstream 12787 15948113 ~ 15953976 (-)
G70660 NA non-coding downstream 204094 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 322487 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 328327 15628883 ~ 15638436 (-)
G70581 NA non-coding downstream 545186 15418999 ~ 15421577 (-)
G70894 NA non-coding upstream 144721 16118282 ~ 16120319 (-)
LOC122351188 NA non-coding upstream 631806 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 636709 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 639556 16613117 ~ 16613424 (-)
G70967 NA non-coding upstream 656925 16630486 ~ 16715102 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 194899 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 567326 15389218 ~ 15399437 (-)
G70549 NA other downstream 660788 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1594089 14359646 ~ 14372674 (-)
G70317 NA other downstream 1712987 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 747243 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 843579 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 913192 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1262311 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 1390626 17364187 ~ 17521560 (-)

Expression


Co-expression Network