cops8 (cops8,trim63b,LOC107723689,LOC107685920,LOC107725246,LOC107695583,LOC106581673)


Basic Information

Item Value
gene id cops8
gene name cops8,trim63b,LOC107723689,LOC107685920,LOC107725246,LOC107695583,LOC106581673
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13354751 ~ 13362915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248869.1
TCCAGCAGGTGTCAGGGTGGAGTCGCAGAGCTAGAGCAGCCGCGGGTTTGTTTTCCTTAGCCGTTAGCATATGAAGCTCTCGTAAAAGATGCCCGTGTCTGTCATGATGGCTGAATTTGATGAAAAGCTGCTATTGCAGTTTGAGACCCAAGAGCTGGAGGCTCCTGGTGGCATTGCTACGCCTCAAGTGTATTCCCAGTTACTAGTCCTGTATCTCCTGCACAATGATATGAATAATGCCCGATACCTTTGGAAACGGATACCACAGGCAATCAAAACAGCAAACCCCGAGCTGGCTTCTATATGGGCCGTGGGACAGCGTATCTGGCAGCGAGACTTTCCAGGGATCTACACAGCTATTGCTGCTTACCAGTGGTCTGAAAGCATTCTCCCTGTGATGGAAGCTTTAAGAGAGTCCACCCGTAGGAGGGCATATGGGCTGGTAGCACAAGCTTACACCTCTATCAGTGCAGAGGACTTTGCTGCGTTCGTGGGATACTCTGTAGAAGAGGCAGTCAAAGGTGTAGTTAGCCATGGGTGGCAGGCAGATCCAAACACCAGGATGATCATGCCACAGAAACCAGatcCGCCCCCGGTCTCTCTGGTTCCAAACGAACAACAGCTGGCCAGACTTACCGACTACGTGGCTTTTCTTGAGAACTGATAAGCACTCCATCCTCTTCCATCCTCTTCCTCACCACCTTTTAGATACTCAGTTTTATGGAAGAAACCTGTGGTGTCCAGGATCCTTCACATACATTCAGTGATGGAGCCACCATCtttcttttgtctcttttgGTTCTTGAACTTGTCACCCTCAGTGATGTAGAAAAGTTTCCAGATTGTCTACTTTGGAGTATGACTTTGCTGTCAGTGTTGTAAATTATTGTCTTTCGGCATAAATACTTAACTATACGACATTATTCAGTCTTTTGTGATGTTACAAAAAATTGGATCCTAATTTCATACTAATAAAGACAAGTATGCGATTTAGGTTCAGGATGGTTTGGACTTCCATTTACGAATGTTGTACAAAATTATGATCATATAAATTTTGGCACAGCAGTCAAAATGGCTTCTTCTTGCAAAATAAACCATGGTCATATTACTGAAACCATGCATTCAATTATGCATTATGTagacaatattttcttttgttgttgcaGTGAGcaaaatgttatcattttaaaaacctctAAAATCTTCCAGAATAATAGGTTTAGGAAATGTCAGTTATGAAGCAGGaataaaggaatatttcagtttatgaTAGCTGgtaaaaaaacccctaaaaagTCATTCTTAGCAAAGGTATTGTTTACCAGTGTGAACAACTGACAGTTCAAAGCAGCTTATTTTGGGAGGCGCACAGTTGTATTTAAGATGTTTTCCACTGTCTGACAAGTGTTTTGTTGACAGTgcatttctgtctgtctgctgctCAGATGTTATGCACTGCCTCCTTGGTTTCTCACGCAGAGCGGATTTGAGAAAGTAGAGGAAACGTACCAGCTGTTGGCCACTGTCACATCTTTTCAGCTTGAGAATAAAAGTGCGATCCATATGGTACTGTGAGAATGTTAACTTCATccattttatcatatatttgtatttgatttttattttcctgtctTGCATTTGctcttctttttcattttgaggttgCACCAACCCGGTCCTATTCAGTGTTTGATTCCgcagatattattattatcttgttTAAGTTTCCCTGTGGTTTAGCATCTTGTTTAAGATCAGCTGGCTGTCTGACACTTGACAAGTTCACTATTTGACCTTATCTGACATAAAACCTTCAAATTTTACTTCAGTGCCGGAACCGTTATGTTTATACttagcatattttatttctgaatattttacaGGAGACTCTGCTTCTAATCCTTTGGACTTTCCAACATAATCCTGCAGACATCAGTTTAGTCTATtctctaaaacaaaaaatgctggAATGTTGACAAGCCTCATATGGTTGTGAATGCATTTCCTATGAGGTGAATGCATTAAACCTGCAGaccttgttttaa
>XM_043248870.1
CCAGCAGGTGTCAGGGTGGAGTCGCAGAGCTAGAGCAGCCGCGGGTTTGTTTTCCTTAGCCGTTAGCATATGAAGCTCTCGTAAAAGATGCCCGTGTCTGTCATGATGGCTGAATTTGATGAAAAGCTGCTATTGCAGTTTGAGACCCAAGAGCTGGAGGCTCCTGGTGGCATTGCTACGCCTCAAGTGTATTCCCAGTTACTAGTCCTGTATCTCCTGCACAATGATATGAATAATGCCCGATACCTTTGGAAACGGATACCACAGGCAATCAAAACAGCAAACCCCGAGCTGGCTTCTATATGGGCCGTGGGACAGCGTATCTGGCAGCGAGACTTTCCAGGGATCTACACAGCTATTGCTGCTTACCAGTGGTCTGAAAGCATTCTCCCTGTGATGGAAGCTTTAAGAGTGACCATTAACATGGACATTCAGCGAACTTCCTCTTTGTTGGGGTCTCCTGGCTCCATGGAGAGCCTTGAAAAACAACTAAGCTGCCCGATCTGTCTGGACATGTTCACCAAACCGGTGGTGATACTACCTTGTCAGCATAACCTGTGCCGTGGATGTGCTAGTGATCTTTATGACTCTCGAAACCCTTATCGTTTCTCCGGTGGTGTCTTCCGGTGCCCCACTTGCCGTTTTGAAGTGGTTCTTGACCGTCATGGCGTTCATGGACTTCAGAGAAATCTTCTAGTTGAGAACATAATTGACATATACAAACAGCAGCAGGAAGGTGggagtggtggtggtggtggtggcaGCACCCCAGAAATGCAGATAAAACCTAAAAGCTCTAAAGAACCAATGTGCCAAGAGCACGAGGAAGAGAAGATCAACATCTACTGTGTGACTCACCAAGTTCCCACTTGCTCTATGTGTAAGGTCTTTGGCCAACATAAAGATTGTGAGGTGTCACCACTTGCTAGTGTCTATCAGGCTCAAAAAGGAGAGCTGAGTAATGCCATTGATGGTCTTGTAGCAGTTAACGGTCGCCTTCAAGCTTTACTTAACCAGATGGAGGAGGCCTGCACAGCTGTTCAGGACAATGCTCAGCGTGCCAAGCAAAGGCTTGGTGAATGCTTCGATTCCCTGTATGCAGCCTTGGAAGAGCGTAAGAATTCCCTCTTGGAACGTATAAGCAAGGAGCAGGATGAGAAGATAGCTGCCCTCAGGAGCCTGGCCAGGCGTTATGGGGATCGTCTTCAGGCAGCCACAGAGTTGACAGACACAGCAGTGCAGGCTCTGGAGCAAAGCGGTGCTGCAGATTTCCTGCTGGCCTCCAAGAACCTGATCACCCAGACAAAGGATGTGGCGAAGAGCTCATTGGCTGAAGAAAGGCCTGAGCCAGGCTTTGAAAAAATGGACCATTTTACTCTGGATACAGAACAAGTGGAGACTTTGTTGTCCAAGATGGACTTTGGaggagatgaagatgaagaattTGAAGATGCTGAAGATCAGGAAGAAGAGTGAATGGGAATAGTGGCATAGAGCGCAAATAGAATGTGATGAAGGACAAAAAGATCAAGCAAGGACAATGGCAATGAGAAAGAAGGTTTAATGTTTGTATATCACTGCTAAGCAGTGTCAGCATTTCAACTTGTATGATTATaagaatatttcagaaaaactaGGTgccatttttatactttttataatgtAGTTGCTGTTGTCACTTTAGAAGTTATCTTCCtacttttacatgttttactTAGCATTGTTGGTCACAGTATGTGGTTATATAGTTCTGTATGTTCAGTTTACTCAATTGTGAACTTAATGctttgatattaaataaaatattcagatgtaTTGAGA

Function

symbol description
cops8 Predicted to act upstream of or within COP9 signalosome assembly and protein deneddylation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS8 (COP9 signalosome subunit 8).
trim63b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Is expressed in brain; cardiovascular system; gonad; and musculature system. Orthologous to human TRIM63 (tripartite motif containing 63).

NR:

description
PREDICTED: COP9 signalosome complex subunit 8

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12181 COPS8, CSN8; COP9 signalosome complex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248869.1 True 2045 mRNA 0.41 7 13354751 13362915
XM_043248870.1 False 1821 mRNA 0.46 5 13358826 13362914

Neighbor

gene id symbol gene type direction distance location
mlphb mlphb,LOC107739953,LOC107670700,LOC107695586,LOC107555071,LOC107571729 coding downstream 103092 13236681 ~ 13251659 (-)
prlh NA coding downstream 118567 13235407 ~ 13236184 (-)
lrrfip1a lrrfip1a,LOC107670703,LOC107571722,LOC107725241,LOC107601083,LOC107739944,LOC107695587 coding downstream 143685 13179504 ~ 13211066 (-)
maip1 NA coding downstream 178217 13173919 ~ 13176534 (-)
pgap1 pgap1,LOC107571728,LOC107601081,LOC107670709 coding downstream 180967 13160284 ~ 13173784 (-)
ints6 ints6,LOC107567782,LOC107685346,LOC107723679,LOC107695579,LOC107725253 coding upstream 37337 13400252 ~ 13410399 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC107725249,LOC107695571,LOC107555069,LOC107567773 coding upstream 57100 13420015 ~ 13424845 (-)
parp14rs1 si:ch211-219a4.3,LOC107725230,LOC107695575,LOC107555066,LOC107555021,LOC107579587,LOC107754848 coding upstream 71050 13433965 ~ 13444172 (-)
faima faima,faim,LOC107723686,LOC107686598,LOC107725233,LOC107695570,LOC108266416 coding upstream 86955 13449870 ~ 13454850 (-)
LOC122351673 tas2r60,LOC107686069,LOC107567768,LOC107658204,LOC107555019,LOC107723647 coding upstream 150687 13513602 ~ 13515484 (-)
G69888 col6a3,LOC107670696,LOC107567775,LOC107739950 non-coding downstream 27338 13302403 ~ 13327413 (-)
G69896 col6a3,LOC107567775,LOC107685998 non-coding downstream 29082 13310873 ~ 13325669 (-)
LOC122351987 NA non-coding downstream 122541 13228154 ~ 13232210 (-)
G69762 NA non-coding downstream 317298 13035956 ~ 13037453 (-)
LOC122351847 NA non-coding downstream 565617 12787115 ~ 12789134 (-)
G69953 NA non-coding upstream 48897 13411812 ~ 13412439 (-)
G70027 NA non-coding upstream 311803 13674718 ~ 13675514 (-)
G70033 NA non-coding upstream 316465 13679380 ~ 13682139 (-)
G70263 LOC107723691,LOC107555352,LOC107725250,LOC107555050 non-coding upstream 452796 13815711 ~ 13816743 (-)
G70271 NA non-coding upstream 472331 13835246 ~ 13835699 (-)
G69757 NA other downstream 368773 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 616580 12738044 ~ 12738171 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other downstream 634061 12707976 ~ 12720690 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other downstream 772326 12518284 ~ 12582425 (-)
G69650 NA other downstream 931305 12422429 ~ 12423446 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other upstream 110220 13473135 ~ 13495667 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other upstream 279388 13642303 ~ 13673807 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other upstream 444907 13807822 ~ 13813327 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 516655 13879570 ~ 13912943 (-)
G70294 NA other upstream 575344 13938259 ~ 13939868 (-)

Expression


Co-expression Network