LOC122351655 (LOC107700959,LOC107700956,LOC107558461,LOC107711456,LOC107733036)


Basic Information

Item Value
gene id LOC122351655
gene name LOC107700959,LOC107700956,LOC107558461,LOC107711456,LOC107733036
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1067017 ~ 1079247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248877.1
CCGTCGAACGTCATTTCCGCGCGATGGATGCTGTACTTCCTGTGTTGTGGGACTCGAGCAGAAGCGAAAGAAGTGTGTGTTGAAGCACAATGTTCAGACATGAAGGCGCTTCGCTGCTTCTGCGTCTGTTCTCTGCTTCTGCTGGAGGTGTCCtcggGACTGGGAGATCTTCGGCGTCCTGAGAACGTCCGTGTGGACTCACTCAACACCCGTTATGTTCTGCGCTGGGACTGGCCTCACGAGACCGCCGCCAACCAGAGCGTCAGCTTCACTGCGCAGTATCTATCGGAGTTTCGGATGCGGAAGGCCAGTAGTGAGAAGTACTGGAAGTCGGagtgtgaaaatgttttggagCTTCGCTGTGACTTCACTGGAGCTGAGCTGCATTATAACGGCTTGTATCTGTTGCGTGTGCGGGCAAACACATCACAACAGTCCTCTGACTGGGTCTGGATCAGATTCTGTCCAGATAAACAAGCTGCTTTAGGTCCTCCCTCCAATGTAAAGCTAAACTCTATTGAAGGAGATCTGGAGATCATCATCACTGATCCTCTGAGCAGCACTAACCAGTCCATGAAAACTTTCCTGGACAGGCTGAGCTACCTCGTCCAGTACTGGAGGCGCTCTGAAGAGCCTCAGAAGGCTAAAGATCTGGAGACAAAGAACAATCTGGTGATGCTGACTGACCTGCACAGACAGACGTTGTACTGTGTGAGAGTTCAGAGCCGTGATGACTTCTATAACAAGAGCAGCATCTTCAGCGACACACACTGCATACGCACTGAAGGTCAGTTGCCATACTGGCAGATATTTCTGTACTTCCTGATCTCTCTTCTGCTGTGCTTCCTGCTGGTGCTGCTGCTATTCTTCTGCTTTTACAAGATGTTTACGGTCTTCAAGAGTACCTTTCGCCCAGCCATTCAACTCCCAGATCACATTCAGGAGCTGTGGTTAAGTGACTCCGAGAAGCCGCAGCTGCTGGCTCCTGAGTCTccagagtctgtgtgtgagccGCTGGTCGTGGTCAGTGCTGATCTGGACGCTGTGGCGGTGGATGAACACTTGAACGCTGAGGAACAGGACTCCAGCACACACAGCCGACACGGCAGCGGAGACTCGGGCGTTTACTCCACAGAGGAGGACTCCTGTCAcagatccacacacacagacctacAGACGAGCAGCAGAAAGCACAGAGAAGAGATGCATGATGGGAACCGGCTGGAGATCTGCGCTTGAAACGCTCCACAGACGTTGCAGCTTTGACTTTCTCTCTTCCTACATCTGTCTGCTTATTGTACACGTGGAGAGGTTTATGACATTTGACTCATATTTCTCATATCTGTATGTTGCCGTGCAGATCTCTTATGATTCTTATAGAATCCTAATTCATTTCTGTCACTAGATGACTTTTTGTTAGCTTCAACAATAGCAGCATTTATTGATTGTTTCATCATTCTTCATCTCTCAGTATCTTAttgaaaacatcacattttaataatccagTGCTTGCTTGCTTGTAATGAAAAGACGGATGTCTTTATGGTATTTTTTGTCAACTCAGTTATGGATAAATTGGGCAATGtgcagaaataacaataaatcataaagaaataaaaaca
>XM_043248878.1
CGTCATTTCCGCGCGATGGATGCTGTACTTCCTGTGTTGTGGGACTCGAGCAGAAGCGAAAGAAGACTGGGAGATCTTCGGCGTCCTGAGAACGTCCGTGTGGACTCACTCAACACCCGTTATGTTCTGCGCTGGGACTGGCCTCACGAGACCGCCGCCAACCAGAGCGTCAGCTTCACTGCGCAGTATCTATCGGAGTTTCGGATGCGGAAGGCCAGTAGTGAGAAGTACTGGAAGTCGGagtgtgaaaatgttttggagCTTCGCTGTGACTTCACTGGAGCTGAGCTGCATTATAACGGCTTGTATCTGTTGCGTGTGCGGGCAAACACATCACAACAGTCCTCTGACTGGGTCTGGATCAGATTCTGTCCAGATAAACAAGCTGCTTTAGGTCCTCCCTCCAATGTAAAGCTAAACTCTATTGAAGGAGATCTGGAGATCATCATCACTGATCCTCTGAGCAGCACTAACCAGTCCATGAAAACTTTCCTGGACAGGCTGAGCTACCTCGTCCAGTACTGGAGGCGCTCTGAAGAGCCTCAGAAGGCTAAAGATCTGGAGACAAAGAACAATCTGGTGATGCTGACTGACCTGCACAGACAGACGTTGTACTGTGTGAGAGTTCAGAGCCGTGATGACTTCTATAACAAGAGCAGCATCTTCAGCGACACACACTGCATACGCACTGAAGGTCAGTTGCCATACTGGCAGATATTTCTGTACTTCCTGATCTCTCTTCTGCTGTGCTTCCTGCTGGTGCTGCTGCTATTCTTCTGCTTTTACAAGATGTTTACGGTCTTCAAGAGTACCTTTCGCCCAGCCATTCAACTCCCAGATCACATTCAGGAGCTGTGGTTAAGTGACTCCGAGAAGCCGCAGCTGCTGGCTCCTGAGTCTccagagtctgtgtgtgagccGCTGGTCGTGGTCAGTGCTGATCTGGACGCTGTGGCGGTGGATGAACACTTGAACGCTGAGGAACAGGACTCCAGCACACACAGCCGACACGGCAGCGGAGACTCGGGCGTTTACTCCACAGAGGAGGACTCCTGTCAcagatccacacacacagacctacAGACGAGCAGCAGAAAGCACAGAGAAGAGATGCATGATGGGAACCGGCTGGAGATCTGCGCTTGAAACGCTCCACAGACGTTGCAGCTTTGACTTTCTCTCTTCCTACATCTGTCTGCTTATTGTACACGTGGAGAGGTTTATGACATTTGACTCATATTTCTCATATCTGTATGTTGCCGTGCAGATCTCTTATGATTCTTATAGAATCCTAATTCATTTCTGTCACTAGATGACTTTTTGTTAGCTTCAACAATAGCAGCATTTATTGATTGTTTCATCATTCTTCATCTCTCAGTATCTTAttgaaaacatcacattttaataatccagTGCTTGCTTGCTTGTAATGAAAAGACGGATGTCTTTATGGTATTTTTTGTCAACTCAGTTATGGATAAATTGGGCAATGtgcagaaataacaataaatcataaagaaataaaaaca

Function

NR:

description
PREDICTED: interferon alpha/beta receptor 1a-like

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0002757 immune response-activating signal transduction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004904 interferon receptor activity molecular_function

KEGG:

id description
K05135 IL10RB, CD210B; interleukin 10 receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248877.1 True 1622 mRNA 0.48 7 1067017 1079247
XM_043248878.1 False 1529 mRNA 0.48 7 1067025 1079247

Neighbor

gene id symbol gene type direction distance location
LOC122351656 LOC107700959,LOC107711456,LOC107558461 coding upstream 9001 1048414 ~ 1058016 (+)
LOC122351648 LOC107686979,LOC107709150,LOC107670647 coding upstream 133679 910031 ~ 933338 (+)
LOC122351660 NA coding upstream 159096 899630 ~ 907921 (+)
LOC122351437 NA coding upstream 244639 805144 ~ 822378 (+)
LOC122351407 LOC107569775 coding upstream 686993 378075 ~ 380024 (+)
LOC122351657 LOC107746587 coding downstream 151926 1231173 ~ 1239023 (+)
LOC122351663 NA coding downstream 220309 1299556 ~ 1315895 (+)
LOC122351375 ccdc148,LOC107568893 coding downstream 580763 1660010 ~ 1688469 (+)
ndufa4l2a ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 coding downstream 782562 1861809 ~ 1865607 (+)
LOC122351505 LOC107734497,LOC107657409,LOC107548806,LOC107685428,LOC107745260,LOC107567977,LOC107657408,LOC107734493 coding downstream 1066258 2145505 ~ 2201714 (+)
G66767 LOC107709150,LOC107670647,LOC107733035,LOC107686979 non-coding upstream 50710 991461 ~ 1016307 (+)
G66744 LOC107686979,LOC107558465,LOC107684617,LOC107560491,LOC107709150 non-coding upstream 63453 984459 ~ 1003564 (+)
G66765 NA non-coding upstream 94509 972179 ~ 972508 (+)
G66763 NA non-coding upstream 98876 967610 ~ 968141 (+)
G66761 NA non-coding upstream 130405 936258 ~ 936612 (+)
G66891 NA non-coding downstream 149985 1229232 ~ 1229442 (+)
LOC122351665 NA non-coding downstream 180332 1259579 ~ 1279178 (+)
G66931 NA non-coding downstream 446616 1525863 ~ 1527400 (+)
G66952 NA non-coding downstream 506688 1585935 ~ 1594452 (+)
LOC122351376 NA non-coding downstream 592124 1671371 ~ 1674598 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 167638 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 262008 797133 ~ 805009 (+)
G66657 NA other upstream 604988 459574 ~ 462029 (+)
G66795 NA other downstream 48279 1127526 ~ 1134989 (+)
bpifcl bpi other downstream 634565 1713812 ~ 1736320 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 2115526 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 2183360 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 2834391 3913638 ~ 3922878 (+)

Expression


Co-expression Network