LOC122351656 (LOC107700959,LOC107711456,LOC107558461)


Basic Information

Item Value
gene id LOC122351656
gene name LOC107700959,LOC107711456,LOC107558461
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1048414 ~ 1058016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248879.1
agaaggagaagcgaaagaagaagtgtgtgtgaagcACAATGTTCAGACATGAAGGCGCTTCGCTGCTTCTGCGTCTGTTTTCTGCTTCTGCTGGAGGTGTCCTCGGGACTGGGAGATCTTCGGCGTCCTGAGAACGTCCGTGTGGACTCACTCAACACCCGTTATGTTCTGCGCTGGGACTGGCCTCACGAGACCGCCGCCAACCAGAGCGTCAGCTTCACTGCGCAGTATCTATCGGAGTTTCGGATGCGGAAGGCCAGTAGTGAGAAGTACTGGAAGTCGGagtgtgaaaatgttttggagCTTCGCTGTGACTTCACTGGAGCTGAGCTGCATTACAAAGGCTTGTATCTGTTGCGTGTGCGGGCAAACACATCACAACAGTCCTCTGACTGGGTCTGGATCAGATTCTGTCCAGATAAACAAGCTGCTTTAGGTCCTCCCTCCAATGTAAAGCTAAACTCTGTTGAAAGAGATCTGGAGATCATCATCACTGATCCTCTGAGCAGCACTAACCAGTCCATGAAAACTTTACTGGGCGACAAGATGAGCTATCACATCCAGTACTGGACGGGCTCTGAAGAGCCTCAGAAGGCTAAAGATCTGGAGACAAAGAACAATCTGGTGATGCTGACTGACCTGCACAGACAGACGTTGTACTGTGTGAGAGTTCAGAGCCGTGATGACTTCTATAACAAGAGCAGCATCTTCAGCGACACACACTGCATACGCACTGAAGGTCAGATGCCATACTGGCAGAGATTTCTGTTCTTCCTGATCTCTCTTCTGCTATGCCTACTGCTGGTGCTGCTGTACTGCTGTTTTCACAAGATGTTTATGATCTTCAAGACTACTTTCTGCCCAGCCATTGAACTCCCAGATCACATTCAGGAGCTGTGGTTAAGTGACTCCGAGAAGCCGCAGCTGCTGGCTCCTGAGTCTccagagtctgtgtgtgagccGCTGGTCGTGGTCAGTGCTGATCTGGACGCTGTGGCGGTGGATGAACACTTGAACGCTGAGGAACAGGACTCCAGCGCACACAGCCGACACGGCAGCGGAGACTCGGGCGTTTACTCCACAGAGGAGGACTCCTGTCAcagatccacacacacagacctacAGACGAGCAGCAGAAAGCACAGAGAAGAGATGCATGATGGGAACCGGCTGGAGATCTGCGCTTGAAACGCTCCACAGACGTTGCAGCTTTGACTTTCTCTCTTCCTACATCTGTCAGCTTATTGTACACGTGGAGAGGTTTATGACATTTGACTCATATTTCTCATATCTGTATGTTACCGTGCAGATCTCTTATGATTCTTATAGAATTCATTACTGTCACTTGATGACTTTTTGTTAGCTTCAACAATAGCAGCATTAAATAGGTCAATGAACTGTCA

Function

NR:

description
PREDICTED: interferon alpha/beta receptor 1a-like

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0002757 immune response-activating signal transduction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004904 interferon receptor activity molecular_function

KEGG:

id description
K05130 IFNAR1; interferon receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248879.1 True 1403 mRNA 0.50 7 1048414 1058016

Neighbor

gene id symbol gene type direction distance location
LOC122351648 LOC107686979,LOC107709150,LOC107670647 coding upstream 115076 910031 ~ 933338 (+)
LOC122351660 NA coding upstream 140493 899630 ~ 907921 (+)
LOC122351437 NA coding upstream 226036 805144 ~ 822378 (+)
LOC122351407 LOC107569775 coding upstream 668390 378075 ~ 380024 (+)
LOC122351404 sema5b,sema5ba,LOC107661137,LOC107660660,LOC108261041,LOC107597557 coding upstream 908739 47876 ~ 139675 (+)
LOC122351655 LOC107700959,LOC107700956,LOC107558461,LOC107711456,LOC107733036 coding downstream 9001 1067017 ~ 1079247 (+)
LOC122351657 LOC107746587 coding downstream 173157 1231173 ~ 1239023 (+)
LOC122351663 NA coding downstream 241540 1299556 ~ 1315895 (+)
LOC122351375 ccdc148,LOC107568893 coding downstream 601994 1660010 ~ 1688469 (+)
ndufa4l2a ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 coding downstream 803793 1861809 ~ 1865607 (+)
G66767 LOC107709150,LOC107670647,LOC107733035,LOC107686979 non-coding upstream 32107 991461 ~ 1016307 (+)
G66744 LOC107686979,LOC107558465,LOC107684617,LOC107560491,LOC107709150 non-coding upstream 44850 984459 ~ 1003564 (+)
G66765 NA non-coding upstream 75906 972179 ~ 972508 (+)
G66763 NA non-coding upstream 80273 967610 ~ 968141 (+)
G66761 NA non-coding upstream 111802 936258 ~ 936612 (+)
G66891 NA non-coding downstream 171216 1229232 ~ 1229442 (+)
LOC122351665 NA non-coding downstream 201563 1259579 ~ 1279178 (+)
G66931 NA non-coding downstream 467847 1525863 ~ 1527400 (+)
G66952 NA non-coding downstream 527919 1585935 ~ 1594452 (+)
LOC122351376 NA non-coding downstream 613355 1671371 ~ 1674598 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 149035 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 243405 797133 ~ 805009 (+)
G66657 NA other upstream 586385 459574 ~ 462029 (+)
G66795 NA other downstream 69510 1127526 ~ 1134989 (+)
bpifcl bpi other downstream 655796 1713812 ~ 1736320 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 2136757 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 2204591 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 2855622 3913638 ~ 3922878 (+)

Expression


Co-expression Network