LOC122351663


Basic Information

Item Value
gene id LOC122351663
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1299556 ~ 1315895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248887.1
AaatctgagaaaaataaatcacaggaTGTCTCTGGGAGAACAGATGAGAAACAACTGATTGATCAAAATCACGCAAGCATtgcaaaatgtatgtaatacCAAGGATACTAACAACCATTGCTTTGTTTCACACGGGATTGTGCATGGAAATACCTGCTCCTGTACATCTGGTCCTGTCTTCACAATATTTTGTCCACTTGTTGTCCTGGAAAATGGGGCCAGGCTCTCCTGACGGTGTCCACTATACAGTCGGCGTGCATGCGCTCAAGTATTGGGGAGACTTGGTGGTGAAGGAGTGTGAAAAGGTAACATTCCCTCTGCAATGCAATCTCACAGAAGCATTTTCTGATATGGAGGACACCTATTACGTCCACGTGACTGCTGCTCTGGGCAACCTCACCTCGACACCTTCTTTCTGCAACCCATTCAAACCCATTTATAATACCACCTATGAACCTCCGCTGCTGACAGTAACTGCGTGTAATCAGTCTCTCTGTATATATCTCAGAGCACCTGCTGAGAACCTCCACCACGTCTACAATTCATTCAAGTCTTACTATAGATTGACAGTCAGCAGTGAAGATAGAGCAGAGTTTTACGTGGATACTGAAGGGTTAAATAATGTGACCCTCAAGGACCTGGCCCCTGGCCGAAGGTACTGTGTGAATGTCAGCATCACTGATCACAGCCCACCCAAcagaccagcagtatgtgcCTCCGCTCCCGAAAGATCAAATGTTTCAGatGTCATTATCTCTGTTATCCTGTGTCTGCTGATGGTGCTGTTAGTGATGTGCACACCAAGATATGTTTATTGCCGTTTCTGTGTAAAAAGAGATCTTCCTCCAGCTCTGAGTTCATTTCAGAGTACAGATAAAGTTATTCTCGTCACTGCTGATGAATCTATTAATGAGGTCCATGAGGAGAGCAGCGCCattgaaaagataaaaacaaacaaagaggaaaataaCCTGAAGGAAGAGACAGAGGAGGTTTTGAAACATGAGACACTAATGGCACACTATCTGAACACTCGAGGTTCCCTGCTCTGTTTTCCAACGTCATTTAGCTCTGTTTTGCTTATTAATCAAACTCCAGATACAAGCCTCGCACCTTCCACAGATGCTCAGAGTGGTAGTCTGATTGTGTTTGAAGGCAGTCAAATCCATACTGAACAAACAGCTTCGGCTAGGTTCCCTAAAGGAGTCAGCGCACTTCAgaatttcagttctgttttcACACACATGGGCGATGAAGACCAAGAGAGCAGTACAGATGTTAACCTGTTTTCTGTGATGTTAGGCGGAGTTTCTGATAAAAACTGCAACACTGAGGATGTGCAGGTATCATGTCCTCAGCATCTGTTACAGACTTGTGCTACATCTACCTGGATTTGTGATTCACAGTCCCAAAACCCTCAAAAGTCCGTTCAAATTAACGTTTCAGAGGAAGAAGATGATGACGATTCAGGGTACTTAAGTCGAAATTAGATTCCTCAAGAAattgttgggtctggatgcccctttaCAGTTCTTTACCGCCGAAGTCActcttgttaaaataaagacacgACAATTTGTTCAATTTAAGAGCTTGCAAGTGGCGTCTTCAGTTGCAAGCGGGAGCAAAACGGTCCAGTCTGCCTTGGTTTGCATCTGAAAGCCCCACCAGAAAACCtcctttttattgtgaaaagatAAGAAAACACACCATGTTACAAAGTGGAGCAAGGTTGAGTTCTGAGATTAAGACTGTCTTCCCAAAACTTGCGAGAAAGCGGCCTTGGTACGCGATAAGCAGGAACTGAGTCCAAGATATGAGAGAACAAGCAATCCTTgaagatatgcacacacatcTGCTCTGGAAATTTCCATCATGCAGTCACTTAATGTCAACATTAAGTTAtagaaaatcatgtttcatCTAACAGAAATGAACAGTCTTTTACATCAGTTGAGACTGAGAATAGATATGGCAATCTTAAAGCACACACAAAGCATTCTGagatgtatacttttttttgtattttaagtgttattattattgtcttttcaATATGCATTTCAGTCTGATGGAGATCATGGCATACCAATATGTATTACTCTTATTTGTCTGGATAAGGAACAAGTGTTTATTGGCAGACACCATGGGCCAGGCAGGATTGGGTAGTGGAGAAGGGTGCAATtgcaaaactatttttcatCTAATGAATATTGAGAATAGTGAGTTACTTACtataaagaatataaatgtatataaatgtgctGAAATTTAATTTCCTAATAGTAAGAAATAAACCAGGGAGGTTTCTATTTCTAGTATTACTGTtacattctaatttaattttgcaaTGGGTCtctttattaaagcattaaGTACACAGTT

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0004904 interferon receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248887.1 True 2385 mRNA 0.41 9 1299556 1315895

Neighbor

gene id symbol gene type direction distance location
LOC122351657 LOC107746587 coding upstream 60533 1231173 ~ 1239023 (+)
LOC122351655 LOC107700959,LOC107700956,LOC107558461,LOC107711456,LOC107733036 coding upstream 220309 1067017 ~ 1079247 (+)
LOC122351656 LOC107700959,LOC107711456,LOC107558461 coding upstream 241540 1048414 ~ 1058016 (+)
LOC122351648 LOC107686979,LOC107709150,LOC107670647 coding upstream 366218 910031 ~ 933338 (+)
LOC122351660 NA coding upstream 391635 899630 ~ 907921 (+)
LOC122351375 ccdc148,LOC107568893 coding downstream 344115 1660010 ~ 1688469 (+)
ndufa4l2a ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 coding downstream 545914 1861809 ~ 1865607 (+)
LOC122351505 LOC107734497,LOC107657409,LOC107548806,LOC107685428,LOC107745260,LOC107567977,LOC107657408,LOC107734493 coding downstream 829610 2145505 ~ 2201714 (+)
LOC122351218 cytip,LOC107745276,LOC107567979,LOC107685429,LOC107734494,LOC107657378,LOC107548784 coding downstream 938662 2254557 ~ 2258615 (+)
nr4a2a nr4a2a,LOC107657406,LOC107734489,LOC107745273,LOC107572156 coding downstream 1178586 2494481 ~ 2499298 (+)
LOC122351665 NA non-coding upstream 20378 1259579 ~ 1279178 (+)
G66891 NA non-coding upstream 70114 1229232 ~ 1229442 (+)
G66767 LOC107709150,LOC107670647,LOC107733035,LOC107686979 non-coding upstream 283249 991461 ~ 1016307 (+)
G66744 LOC107686979,LOC107558465,LOC107684617,LOC107560491,LOC107709150 non-coding upstream 295992 984459 ~ 1003564 (+)
G66765 NA non-coding upstream 327048 972179 ~ 972508 (+)
G66931 NA non-coding downstream 209968 1525863 ~ 1527400 (+)
G66952 NA non-coding downstream 270040 1585935 ~ 1594452 (+)
LOC122351376 NA non-coding downstream 355476 1671371 ~ 1674598 (+)
G67023 upp2,LOC107699962,LOC107568900,LOC107568899,LOC107653244,LOC107579388,LOC107569728,LOC107751513 non-coding downstream 372760 1688655 ~ 1692476 (+)
LOC122352111 NA non-coding downstream 377829 1693724 ~ 1695529 (+)
G66795 NA other upstream 164567 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 400177 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 494547 797133 ~ 805009 (+)
G66657 NA other upstream 837527 459574 ~ 462029 (+)
bpifcl bpi other downstream 397917 1713812 ~ 1736320 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 1878878 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 1946712 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 2597743 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 2632141 3948036 ~ 3983582 (+)

Expression


Co-expression Network