LOC122351673 (tas2r60,LOC107686069,LOC107567768,LOC107658204,LOC107555019,LOC107723647)


Basic Information

Item Value
gene id LOC122351673
gene name tas2r60,LOC107686069,LOC107567768,LOC107658204,LOC107555019,LOC107723647
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13513602 ~ 13515484 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248889.1
CACATAAAGGTTTGCACGGTTAATTAAGCATTTTGATACAGGAGCCCGGCTGCATCATCCATATGCAAAACTGAACGATGATTAACGATGATGGAAATTGTCTTAAGGTTTTAGTGATGAGCATTGTCATTTCCAAGGTATtacattttctgcaaaaaaaaaaataaataaataaatgaattgcttACTTGTGCACAACTCACCACTATGCTGCAGTATTGTGGGTGGCTTGCCTTCCAGTATGTGGTTTATGGCTCGGGTGCTTTTTTCAATAAagtctgtttttgttattgtcCACCAAGCAGAAATCTATACTGACCTAGTGTTTCTTATTTAGAGACTTGTTCAAGTCCCCTTTGTCTagtgatggatttgttttgctattacaaacgcagcttttcacttcacaagaacTGGAGTCgcgtggattacttgtggattattgtcatGCTTTTATCAGTGTTTCggactgacggcacccattcagcaTCCgctgctgagcaagtgatgtaatgcaaatgtattcTGATGTAGAAACAACTCACGTTACTTTTTCAGCAAATTTCTATGTTAGGGTGAACTTTTGCTTTAAGAACGGAGCCCTtaaaaaagtccaaacatctaaaattgaaaagtttgcggtcaataaaataaagctggCTATAAGtagtttaataatattgttCAAGTAATGTTCACAGTTGCACTGATTATGTAACACTTGACGATGAGCCTGGGGATGGTTCTGTTTTAATCCATGTAAGAATTTGTGTCATTTGTTTATGGTTGGCCGTCAAGCCACATTTAATTTACCAACCTATTTTACTTTGACcttatatcatttatttgttgtaataaaAGCGTGGGTGTATCAGGAAGGGCAGGACATTTTCAGGACCATCAGCAACTGATTTGAGGCGACAGTGAAGATGGAGCCATGGCTATATGCTTTGCTCTCCAGTCCCCTTTGCCTCACGGCAACCTTTTTCAACATCATCTTCTCTTTTTGCCTAATGAGACCAGTCGCCGGAGTGACGCTTCGCAATCCACTGTGCTTCTTGTTAATTGTGGTGCTATTCAATTCAACGTTTCAACAACTGGTGACTGTGATGACCATAGTTATGCTGCTTTTTGATGCACCGTTCTGGCTTCAAACGCTAACCAGAGCTTTGATTTATCAGTTTTTCTGCGCCAACTTCTCCTGCAATGCCTGGATCAGCATTTTCTACTACATTTCAATTGTTCCTCAACAACATCCAGTCTTCATGTGGATTAAGAGGAATATTAATGCCATAATATATATCGGCTTCGCTCTGAATCAAATCGTGCTTGTGATTTCTTTGTCTTTGGGAGCAGTGATGTATTTTTTGCTCGAGCCTGTCCCAAACAATTCCACTTCAcccaaactaaacaaaacatcaacattCGAAAACTCAGACTCAGTCCTGTATTTGTTTCACGTGTCcaattttacatatttgctATATTGCACCTGCCCGCtgtttacattattattctCTTGGGGAAAAACCTTTGTTTATCTACGTGAACATATGAAAAAGATGGGACAGAGTGGCGAATCTTTTTCCCAGCCTCAGCAGAAGAGCCAGATGAGGGTGACAGTAACTGGCATGGTACAGGCAGCCCTTTTTCTGCCCAGCAGCCTATGGACTATAGCAGCTGCTTCCCTCTACATAACAGACCTCTTTGAAAAGGTTGATCCCAGTAGATTTGTCACAATGACATTCTGCTCAATGTCCAGTTTGGGAaatttactgtgttttggatTCTCCCAGTCTGTGTTTCGCCATGGAATTGTAAGTGTCATTAAGAAACTAAAGAGACACAAATGAGATCTTAGGATTCTCCCCACTTACACGTAG

Function

symbol description
tas2r60 Predicted to be involved in G protein-coupled receptor signaling pathway. Is integral component of membrane.

NR:

description
PREDICTED: taste receptor type 2 member 60-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248889.1 True 1883 mRNA 0.40 1 13513602 13515484

Neighbor

gene id symbol gene type direction distance location
faima faima,faim,LOC107723686,LOC107686598,LOC107725233,LOC107695570,LOC108266416 coding downstream 58752 13449870 ~ 13454850 (-)
parp14rs1 si:ch211-219a4.3,LOC107725230,LOC107695575,LOC107555066,LOC107555021,LOC107579587,LOC107754848 coding downstream 69430 13433965 ~ 13444172 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC107725249,LOC107695571,LOC107555069,LOC107567773 coding downstream 88757 13420015 ~ 13424845 (-)
ints6 ints6,LOC107567782,LOC107685346,LOC107723679,LOC107695579,LOC107725253 coding downstream 103203 13400252 ~ 13410399 (-)
cops8 cops8,trim63b,LOC107723689,LOC107685920,LOC107725246,LOC107695583,LOC106581673 coding downstream 150687 13354751 ~ 13362915 (-)
cntnap5a cntnap5a,LOC107723682,LOC107567780,LOC107684760,LOC107658203,LOC107725209,LOC108425961 coding upstream 204 13515688 ~ 13574954 (-)
LOC122351432 LOC107723646,LOC107684057,LOC107555330,LOC107577428 coding upstream 169501 13684985 ~ 13694187 (-)
mmadhcb LOC107555358,LOC107723693,LOC107725215,LOC107555052,LOC107658219 coding upstream 244840 13760324 ~ 13765326 (-)
si:dkey-91i10.3 si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015 coding upstream 262142 13777626 ~ 13783452 (-)
eaf2 eaf2,LOC107683512,LOC107725251,LOC107723678,LOC107658291,LOC108261038 coding upstream 268301 13783785 ~ 13787128 (-)
G69953 NA non-coding downstream 101163 13411812 ~ 13412439 (-)
G69888 col6a3,LOC107670696,LOC107567775,LOC107739950 non-coding downstream 186189 13302403 ~ 13327413 (-)
G69896 col6a3,LOC107567775,LOC107685998 non-coding downstream 187933 13310873 ~ 13325669 (-)
LOC122351987 NA non-coding downstream 281392 13228154 ~ 13232210 (-)
G69762 NA non-coding downstream 476149 13035956 ~ 13037453 (-)
G70027 NA non-coding upstream 159234 13674718 ~ 13675514 (-)
G70033 NA non-coding upstream 163896 13679380 ~ 13682139 (-)
G70263 LOC107723691,LOC107555352,LOC107725250,LOC107555050 non-coding upstream 300227 13815711 ~ 13816743 (-)
G70271 NA non-coding upstream 319762 13835246 ~ 13835699 (-)
G70272 NA non-coding upstream 321826 13837310 ~ 13837600 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 17935 13473135 ~ 13495667 (-)
G69757 NA other downstream 527624 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 775431 12738044 ~ 12738171 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other downstream 792912 12707976 ~ 12720690 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other downstream 931177 12518284 ~ 12582425 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other upstream 126819 13642303 ~ 13673807 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other upstream 292338 13807822 ~ 13813327 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 364086 13879570 ~ 13912943 (-)
G70294 NA other upstream 422775 13938259 ~ 13939868 (-)
G70317 NA other upstream 680995 14196479 ~ 14253776 (-)

Expression


Co-expression Network