rftn2 (rftn2,LOC107690607,LOC107731757,LOC107719806,LOC107595849,LOC107569700)


Basic Information

Item Value
gene id rftn2
gene name rftn2,LOC107690607,LOC107731757,LOC107719806,LOC107595849,LOC107569700
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15716322 ~ 15728800 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248898.1
TCAACACGTTTCCAGCCCGCTACAacttttgctttattatttcgCGGCCATTTAGGGCGATCGGACACACGGCACGTCATCCTCGGTTCTGTGCCACTCCCAAAGGATTAAGTTGCTGGAATATGGAGCAAAGCCATTAAGCACGGGAGCGGGAGTCTTCTGAGTGCGTGGCCGAGCGGGTCGCCCCTTGTCCGGCCTTACGTGTGCTGGAGATCCCGCTAATATGGGATGTGGACTACGGAAATTGGAAGACCCGGAGGACAGCAGTCCGGGGAAAATCTACTCCACTTTAAAGAGACCACAAGTCGAGACTAAAACAGACTCCGCGTACGAGTATGTGCTGCTGGACTTCAGCCTGGAAGGCAGTCGGCCCACGGTGCAGTATCTGTCCTCGCTGTGCGAGCTGCCACATGCCCTGCAGTCCTACTACACCCAGGGCTACGTACTGGCCGCCCTGCATCCCATTATCCTCTCGGTGGGCCGGACCCGCTTCCTGCCCTGCAGCCTGCTCTACCGGGCCATTCTGGTCCGACCTCGATCTAGTAATCATGCAGTGCCAATGATTGACAGCTTGCCAGTGCTTCGGGTGGAGGAGTGGCCACTGCCTGGAGAATCTCTGACCAGTGACACAGTGAGACTGCTCATAGACAGGGTGAACAGCTATGCCAGGGGTGGCGTGCGGTTCGTGGGGTCGGTGCTCCAGCAGGCTGGAGGAGGGGGGTGTAACGGTAGAGTGCCCAGTCCCAGGAGGGGCTGCCGTTCCCCTCCTCGCACCCCACCTCGCACACCTCCCGGAGATGCAGATCTAGAGGGCCGTGGCTACAGCCCGGACCTGAGATTGCTGGTGCTGTTTCACTCCTGGGCTCCTGGATGTGCTCCGCTGGACTCTCTGGCCTGCTGTTATCACCAGGGGGCGCTGTCCATGCGCGTGTCCAGGAAGGGCCAAGTTGTCAGTGCCCTAgaagctgattggctggaatTGACGGCAGCTTACTACCGCAAGGGCTGGTCATTGGTCGACTCCTTTGTATACTGGGACACACCTAAAGGTGAGCCAGTGCCCAGGTCTCTAGAGGGACTGTTTGTGTATGAGGAGAAAAGCACAGCGCCACCTGCCAATGACACGATTGTGGTGGAACAGTGGACCGTTATAGAGGGTTCAAATGTAAAGACAGACTACGGTCCTCTGCTCCACACATTAGCTGAATTTGGCTGGCTGCTCACCTGTGTGCTGCCCACCCCAATTATTCGCCACGACAGTGAAGGGAATCTCGCCACCAAGCAAGTTGTTTTCCTGCAAAGACCCGTCAAGGGCCAAACGGTACCACAGCACACTCAgGGATCGGCCAGACGAGAGGTGTGCAGTCACTCTGTGAGTCGAGGAGTGGATGAGCCACACACAGAGCTGTTGTCTCCGTGTTCAGGGGGAATCGGCGGTTTCCCCGTGTTTGGAGGGGGGTATCCCAGTGCCCTGTCCCACTTAGATGAGGGAGGATTTGAGCCAGAAGATGGGGCTGCAGAAGTCACCTGTATGTGATGGACCAACTCGAAGatgcaatttctttttcttttgacgATTGAGAGCGGCAGCTGGTGTAGAATTGATCACATCACCAGACCACGAGATTTGTGTTCCTGTACTAGAAGCGGTTGGACTCATAgcacttttttgtaaattatttttaacaagccATAACGTATCCTAGAGATCAGTTTTATTTACTCTTGAAAGCCAAGTTTATGTGCAATGATACTTTGATACAAAGTATCAAAAATAGCACTGAAATTCACTGTTATTTTCAGACAGTATCTCGCAGCACTCGCACAATACATGTTCAGTTCACATCGCTTGTCAAGATCAAGCTccaacacaatttttattttttttttgttcatcacTGCGAGTGTCCTTCCTCACTGTTCATTTTTTGCTGTTCTGCTTCCTGTTCCGTTCATACTCCGAACCAGCCGACAATTCAGTTGTTTGTTCTAACACCTGCAACGGTTCAACGTGACGAACTCAGGAACTGAGTGTCCAAACAGCCCCTCTACAGGACGCAGACGTTTACTTGGTGGGCAGATTTGCAACATGCTTAAATTTTTCAGGACGTGGAGTCAAAACATCAGAAATGCTTCATTTAGCTTGGGCTGCCGGTGTTTAAGAGAAATGCAGCCTATTGCCTTTAGGGCTTCATAAAGGAATCCAAGAACTAGTCTGTACTTGACACTGTAGTCTGGTTTCAGACCCGTGCTGTGTGTTCAAGTGGTGCTAGAGCTGAATTTGTATGTTAATCTTCTGGGAATTTCTTCACACTATCTAAATGGTAGAGGTAATACAATCTGATTTGCATGTTAACTGGCATCATTGCAAGTTCAATGACTGCTAAGGGACTAAGAGCAGGGTACTTTAAATTTCTATTCAGTATAAACTGACTAGTTCTCCCCAGCTTGGTCAAATTCCATTTGACtgg

Function

symbol description
rftn2 Predicted to be located in plasma membrane. Orthologous to human RFTN2 (raftlin family member 2).

NR:

description
raftlin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248898.1 True 2471 mRNA 0.51 10 15716322 15728800

Neighbor

gene id symbol gene type direction distance location
hspd1 hspd1,LOC107569661,LOC107690611,LOC107659893,LOC107595848 coding downstream 8658 15701915 ~ 15707664 (-)
sf3b1 sf3b1,LOC107731751,LOC107569635,LOC107659892,LOC107719800,LOC107595847,LOC107690614 coding downstream 23707 15682700 ~ 15692615 (-)
ankrd44 ankrd44,LOC107719801,LOC107659898,LOC107595853 coding downstream 35483 15657514 ~ 15680839 (-)
fgf14 fgf14,LOC107569606,LOC107600372,LOC107681314,LOC107690615 coding downstream 89531 15525358 ~ 15626791 (-)
nalcn nalcn coding downstream 226077 15425447 ~ 15490245 (-)
satb2 satb2,LOC107731767,LOC107690605,LOC107569722,LOC107595845,LOC107659884,LOC107719815 coding upstream 105739 15834539 ~ 15876097 (-)
dnajb11 dnajb11,LOC107595843,LOC107690604,LOC107719809,LOC107659888,LOC107731764,LOC107569729 coding upstream 165322 15894122 ~ 15899152 (-)
LOC122351158 LOC107690624,LOC107595883 coding upstream 173547 15902347 ~ 15904183 (-)
LOC122351156 LOC107731741,LOC107569997 coding upstream 177228 15906028 ~ 15907567 (-)
ercc1 ercc1,LOC107570013 coding upstream 180484 15909284 ~ 15913570 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 72046 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 77886 15628883 ~ 15638436 (-)
G70581 NA non-coding downstream 294745 15418999 ~ 15421577 (-)
LOC122351294 NA non-coding downstream 453646 15256988 ~ 15262676 (-)
LOC122351681 dach1,LOC107668899 non-coding downstream 674592 15034819 ~ 15041730 (-)
G70660 NA non-coding upstream 33583 15762383 ~ 15762669 (-)
LOC122352066 NA non-coding upstream 219313 15948113 ~ 15953976 (-)
G70894 NA non-coding upstream 389482 16118282 ~ 16120319 (-)
LOC122351188 NA non-coding upstream 876567 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 881470 16610270 ~ 16610561 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 316885 15389218 ~ 15399437 (-)
G70549 NA other downstream 410347 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1343648 14359646 ~ 14372674 (-)
G70317 NA other downstream 1462546 14196479 ~ 14253776 (-)
G70294 NA other downstream 1776454 13938259 ~ 13939868 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 42621 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 992004 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 1088340 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 1157953 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1507072 17235872 ~ 17255491 (-)

Expression


Co-expression Network