tnfsf13b (tnfsf13b,LOC107702981,LOC107688720,LOC107721586)


Basic Information

Item Value
gene id tnfsf13b
gene name tnfsf13b,LOC107702981,LOC107688720,LOC107721586
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6487238 ~ 6492356 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248919.1
ACGCAGTTTGGCGGAACAGCCACAAAGTAAGTGGTGACAAAGCAACTTTCAGTTGCAGAGCAGTGTTAAATACGGTGGGTGTGGACAGCTTGGCAGGAAAGGGACACAAAAACTAGACCGTTAGCTGGGGAGCTGCTGCAGGCAGGGCATTTTTGTTGAGTACAGTAGCTTTTGAACTAAGTTTGACTTCAACTGCTGAAACCAGTTTTCTTCTGTTCCACATCAACAAATATCAGCTTGAAGAGGAAAGGTAGTTGTGTAAGAGTCTGATCTGGgatttttctgaaagaaatgtatGCTAAGAGCTTCGGGGGGACATTAATTCCATATAAAGGTGAACTGGATTGAGCAggcgtaataaaaaaaaactccagaCAAGCTTCTTTCTGAGTAGAAACCTCTCACTTTAAGGATGATGTTTTGAGTTTGTTACCACCATGCCCGGTGAAGATGTCGGTCCAGGTCGGGGTGAAAGGAGAAGGTTGCCCTGGCTGTTTTTGGTGCTGGTGATTGCTACCATCACCTCCTCCTCCCTGTCTGTGATCTCCCTGTACCACATGCTGGCCCTGCAGGCCGAGGTGGAGGGTTTGAGAGCTGAGGTGGTCCGCAAGAGAGAGGAGCAAAGCGGGACACTAGAAGAACCCGTAAAGGAGGCAGAAAAACAAACCCATCGgcaggaagaagaagagggcAAGGGGAACATTGAGTATCTGCAGCAGGCTGAGATGGATGAACCCGTAACAGACCATACTGTCCTTTCAAAAAGGAGCCTGGGTCGTACGTCAAACAAAGCAGAATCCCAGCCCTGTTTACAAATGATGgcaaacaacaagaaaaaaaccttCCAGAAAGagTTTGCTTTGGAAATGTGCACAGCCATCCCATGGCAAGTCGGACTGAAGCGTGGAACAGCTCTGGAAGAAGAGCAGGGCACCATTTTAGTCAAAGAGGAAGGATTCTTCTTCATCTATAGTCAGCTCTCCTTTTCCCAGGTTTACTACACAGACTATACGTTCGCCATGGGCCACATCGTGATTCGTATAAAGAAGAACGTGGTTGGAGACGAGAGTCAGCACGTTGATCTGTTCCGCTGCATTCAGAGCATGAATCGAGTCAATCATTTCTACACCTGCTACACGGGAGGCGTGGTGAAGTTGGACTCTGGGGACAGACTGGAGCTTCTGATACCTCGTACCCATGCTAATATCTCTCTGGATGGTGATTCCACCTTCTTAGGAGCCATAAAACTGGCCTGACGTTGGAGAAAGGCTTTGGATCGGACACTGAATGCGATTGGATATGCTATTGTTATTACTCATAAGGataattattattgatattataacTGGACTTCATGAATACAAGTGCTGCTTCACGCTGTGGGTTATTCTTGAAAATGTCTTCGCTGAATTACTTGGTATCCATTTCTTTTGGTTCCCACTTCAGTTGCACGCATGCACAAAATCGACGTTATTCAGCCTATTCAAGTTCCTCTATGTCATGATTATAATGTCATTCTTCATAATGCTTTAACAAAATGCACTTATACACGTATGCTTCTTTGAACCCGTTCAGGTGTGTAACAACCATTTTTGACAATCCAGTGATGGATAAAATCGTGTCCTGctctgcattttttatttaattcattttaaatgaacactttatTTATCGCATTTTACTCTTAAGATGTGTTATTAACAATCTCTTGTTGGGTCGCGagcgtgcgcacacacacacacacacacacacacacacacacccacccacacccacacccacctgtatttaatgttttatcattCAGAACTGTTGCAGGATAACACCTCAGCACGTGCTTTGGTTTTAACAAAGCACTTTGACCTGTATTAAACGAAAGCGTGCGTTCATCTCGTCTGTATGTTTCAAGCTTAAAGTGTATAAGCTTATATGCAGCCTCCGTGATTCTACCAGCAGATGGTGACATTATCACGCAGTGGAGGACCATCTCAAACAGAAAGTGCTTTCTTTGTGCTGAGTGCTCCACACAGCTTTCATATGGACCGCTCTTTCTGTTCATTGACAGAGGTTGTATATGCTTCTCGTATAGAAATAATCCTCATAGTATCACAGGCCTTGATATGCTGGAAttctgtatttactgtaaacatAGTGTCTTTACAATAAATCATCAGATCAG
>XM_043248920.1
AACAGCCACAAAGTAAGTGGTGACAAAGCAACTTTCAGTTGCAGAGCAGTGTTAAATACGGTGGGTGTGGACAGCTTGGCAGGAAAGGGACACAAAAACTAGACCGTTAGCTGGGGAGCTGCTGCAGGCAGGGCATTTTTGTTGAGTACAGTAGCTTTTGAACTAAGTTTGACTTCAACTGCTGAAACCAGTTTTCTTCTGTTCCACATCAACAAATATCAGCTTGAAGAGGAAAGGTAGTTGTGTAAGAGTCTGATCTGGgatttttctgaaagaaatgtatGCTAAGAGCTTCGGGGGGACATTAATTCCATATAAAGGTGAACTGGATTGAGCAggcgtaataaaaaaaaactccagaCAAGCTTCTTTCTGAGTAGAAACCTCTCACTTTAAGGATGATGTTTTGAGTTTGTTACCACCATGCCCGGTGAAGATGTCGGTCCAGGTCGGGGTGAAAGGAGAAGGTTGCCCTGGCTGTTTTTGGTGCTGGTGATTGCTACCATCACCTCCTCCTCCCTGTCTGTGATCTCCCTGTACCACATGCTGGCCCTGCAGGCCGAGGTGGAGGGTTTGAGAGCTGAGGTGGTCCGCAAGAGAGAGGAGCAAAGCGGGACACTAGAAGAACCCGTAAAGGAGGCAGAAAAACAAACCCATCGgcaggaagaagaagagggcAAGGGGAACATTGAGTATCTGCAGCAGGCTGAGATGGATGAACCCGTAACAGACCATACTGTCCTTTCAAAAAGGAGCCTGGGTCGTACGTCAAACAAAGCAGAATCCCAGCCCTGTTTACAAATGATGgcaaacaacaagaaaaaaaccttCCAGAAAGagTTTGCTTTGGAAATGTGCACAGCCATCCCATGGCAAGTCGGACTGAAGCGTGGAACAGCTCTGGAAGAAGAGCAGGGCACCATTTTAGTCAAAGAGGAAGGATTCTTCTTCATCTATAGTCAGGTTTACTACACAGACTATACGTTCGCCATGGGCCACATCGTGATTCGTATAAAGAAGAACGTGGTTGGAGACGAGAGTCAGCACGTTGATCTGTTCCGCTGCATTCAGAGCATGAATCGAGTCAATCATTTCTACACCTGCTACACGGGAGGCGTGGTGAAGTTGGACTCTGGGGACAGACTGGAGCTTCTGATACCTCGTACCCATGCTAATATCTCTCTGGATGGTGATTCCACCTTCTTAGGAGCCATAAAACTGGCCTGACGTTGGAGAAAGGCTTTGGATCGGACACTGAATGCGATTGGATATGCTATTGTTATTACTCATAAGGataattattattgatattataacTGGACTTCATGAATACAAGTGCTGCTTCACGCTGTGGGTTATTCTTGAAAATGTCTTCGCTGAATTACTTGGTATCCATTTCTTTTGGTTCCCACTTCAGTTGCACGCATGCACAAAATCGACGTTATTCAGCCTATTCAAGTTCCTCTATGTCATGATTATAATGTCATTCTTCATAATGCTTTAACAAAATGCACTTATACACGTATGCTTCTTTGAACCCGTTCAGGTGTGTAACAACCATTTTTGACAATCCAGTGATGGATAAAATCGTGTCCTGctctgcattttttatttaattcattttaaatgaacactttatTTATCGCATTTTACTCTTAAGATGTGTTATTAACAATCTCTTGTTGGGTCGCGagcgtgcgcacacacacacacacacacacacacacacacacccacccacacccacacccacctgtatttaatgttttatcattCAGAACTGTTGCAGGATAACACCTCAGCACGTGCTTTGGTTTTAACAAAGCACTTTGACCTGTATTAAACGAAAGCGTGCGTTCATCTCGTCTGTATGTTTCAAGCTTAAAGTGTATAAGCTTATATGCAGCCTCCGTGATTCTACCAGCAGATGGTGACATTATCACGCAGTGGAGGACCATCTCAAACAGAAAGTGCTTTCTTTGTGCTGAGTGCTCCACACAGCTTTCATATGGACCGCTCTTTCTGTTCATTGACAGAGGTTGTATATGCTTCTCGTATAGAAATAATCCTCATAGTATCACAGGCCTTGATATGCTGGAAttctgtatttactgtaaacatAGTGTCTTTACAATAAATCATCAGATCAG

Function

symbol description
tnfsf13b Predicted to enable receptor ligand activity. Involved in B cell homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human TNFSF13B (TNF superfamily member 13b).

NR:

description
tumor necrosis factor ligand superfamily member 13B

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
K05476 TNFSF13B, TNFSF20, CD257; tumor necrosis factor ligand superfamily member 13B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248919.1 True 2179 mRNA 0.44 7 6487238 6492356
XM_043248920.1 False 2150 mRNA 0.44 7 6487238 6492342

Neighbor

gene id symbol gene type direction distance location
myo16 myo16,LOC107716764,LOC107688718 coding downstream 9692 6319090 ~ 6477546 (-)
LOC122351467 abi2,LOC107738105,LOC107752895 coding downstream 388434 6088469 ~ 6098804 (-)
LOC122351466 LOC107670336,LOC107720941 coding downstream 400219 6069745 ~ 6087019 (-)
LOC122351270 LOC107730457,LOC107549918,LOC107670341,LOC107752618 coding downstream 508360 5975136 ~ 5978878 (-)
LOC122351906 LOC107670338,LOC107721263 coding downstream 587595 5888893 ~ 5899643 (-)
abhd13 abhd13,LOC107570096,LOC107702974,LOC107688719,LOC107551070 coding upstream 253 6492609 ~ 6498204 (-)
LOC122352171 fam155a,LOC107716804,LOC107721616,LOC107570097,LOC107702989,LOC107688721,LOC101886421,LOC107735187 coding upstream 9053 6501409 ~ 6599198 (-)
LOC122351204 LOC107716777,LOC107688771,LOC100331465,LOC107602892,LOC107702999 coding upstream 193862 6686218 ~ 6708208 (-)
si:ch73-390b10.2 si:ch73-390b10.2,LOC107688773,LOC107551072,LOC107692818,LOC108266990 coding upstream 227398 6719754 ~ 6726798 (-)
tmtops2b tmtops2b,LOC107602912,LOC107688724,LOC107716802,LOC107721599,LOC106586769 coding upstream 314973 6807329 ~ 6832254 (-)
G68189 NA non-coding downstream 245636 6241322 ~ 6241602 (-)
LOC122351301 NA non-coding downstream 344556 6117851 ~ 6142682 (-)
G68120 dip2a non-coding downstream 439642 6045115 ~ 6047596 (-)
G68082 NA non-coding downstream 680911 5805940 ~ 5806327 (-)
G68055 NA non-coding downstream 751455 5735337 ~ 5735783 (-)
G68265 NA non-coding upstream 187739 6680095 ~ 6683011 (-)
G68266 NA non-coding upstream 205330 6697686 ~ 6697893 (-)
G68270 LOC107716762,LOC107688772,LOC107602882,LOC107721583 non-coding upstream 223640 6715996 ~ 6718143 (-)
LOC122351577 NA non-coding upstream 282718 6775074 ~ 6776974 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding upstream 301046 6793402 ~ 6794375 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 226169 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 387326 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 443313 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 556102 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 1087358 5396865 ~ 5399880 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other upstream 578629 7070985 ~ 7153954 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 1522093 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 1584112 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 3415832 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3941151 10433507 ~ 10443619 (-)

Expression


Co-expression Network