LOC122351699 (LOC107567775,LOC107739950,LOC107670696)


Basic Information

Item Value
gene id LOC122351699
gene name LOC107567775,LOC107739950,LOC107670696
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13275992 ~ 13278596 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248965.1
GATGTTGCATTTCTTATTGATGGATCTGATGATTCTAAAATTGGTTTTGAGGGAATTCGTAATTTTATCCAGAGGTTAGTTGAGAGTTTCAACCTGGAGGAAGATCTTGATAGGGTGGCGGTTGTGCAGTACAGTCGGGATCCCACTGCTAATTTTTATCTAAGCTCATACTCAACCAAAAAAGAAGTACTCAATTCCATACGATCTATGAGACACAAAAGTGGAAGGCCACTGAATACTGGAGCTGCTCTACTGtttgttaaagaaaatattttttcacaatcCTCTGGGAGCAGACATCATGAGGGCGTACCTCGGATTCTGTACTTATTTAGTGGTGGTAGATCTGGTGATGATGTCAGAACCATTTCACAAAGTTTAAgagaaaacaacataaaagtcATTACAATTGGCACAAGTAATTCTGATACACTTGAGTTACAGACAGTGTCTACAACACCAGCATATGCTTTCTCTGTTCCTGATTTTACCTTCATCAACAGTATTGTCCAAAGAGTTGCCTCTGTTTTGACAAAGGGTGATGAAATTGCTGAGCAATTAATGATTCCTGGGGGCCAGACTTTGGATGCAGGAAGAAATATTGTGTTTCTTATTGATGGATCAGATGATGCTAGTGATAGATTCACAGCTATACGAGAATTTGTGGCCAGCTTGGCAGAGACATTTGAGATTGGTAAAGAAAAAGATCAAATTGCTGTTGTACAGTTCAGTAATACTGCAGCAATAAGCTTTAATCTCAGTACATACTCATCCACTTCTGAGGTGGCAGATGCTATACGCAACCTCAAACCAAAAGGGGGAAGGCCGCAATATATTGGCCAGGCTTTGCAGTTTGTTAGAGACAGTATTTTTACCCCTAGTGTTGTAAGTCAGCAAATAGGACGTGTTAGCCAAAATCTTGTGCTTGTGGCTGGTGGCAGATCAAGAGATTCTCCTCATGGACCAGCTAATGCACTGAAGAGTATGGGAGTAAACATTTTTGCTATTGGGTCAAGGCTGACAGATCCTATTGAAATGGAAGCCATTTCTTCGAAGACAGATTATGCCATTGCTGTTTCCGattttcatgatttaaaaaatgtacgcCAAAGCCTCATGACAAAACTTTTGGGTGAAAGACAAAAGGGAGACAGAGAAGTTGATGGCACAGGATTAAAAAGGGATATTGCTTTTCTTGTGGATGGCTCGGACAGTACAAGAAGAGGATTTCCAGAAATACGTGATTTTCTGTACAATATTATCACAAATCTCAATGTGGGTATTAATAATGATAGAATCTCAATAATTCAGTACAGCAATGTGGCTGtagcaaatttttatttgaattcgtTCTTAAGAAAGGAAGATGTGTTGAATGCAGTAAAGGTGCTAAGCCATAAAGGTGGAAGGCCCTTAAACACAGGCTCTGCACTTcaatatgtaaaagaaaatatctttataaGTGCCTCTGGAAGCAGGCAAAAAGAAGGCATCCCTCAAATATTAATTCTGCTGACTAGTGGAAAATCAAGGGACAGCATTTCTGAAGCAACCTCTGCTTTAAAAAGAAGTGGGGTCTTAATATATGGAATAGGAGGAAAGCACTTAGATTCTTATGAATTACATACAATTTCTTCTGACGATAAAGTGCTTTCATTGGCTGACTTCAGTGAATTACCAAAAATTCAGACACAGCTATTAGAAGCAATAAAAGTCATTCCAACTtccaacaaaaaagaaatgataggtaagtataataatgtttttacacaaTAGTCAGTAAAACTTAACGTTAATCAAGAAAAATGTGTAGTATTTacgtgtgtgtggagtgtgaaAGCTAAATAGAAGCATGCTCAGAAACATGCATAACCACTGTGAATATTGTGACTTTGTCACtccatccaaaaataaaacactaatttataaaataattatactgtTCAAGTAGTCTTCTTGCTGTTCATTTCCATGAAATAGTCATAATCATTACTTCTGCAGTGCAGTGTTGCAAGCTTTAAGTGTGTGCTTGAGCGCTGATATGCTACATACAATTAAGGACTCACTATTGTGAACTACA

Function

NR:

description
PREDICTED: collagen alpha-3(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248965.1 True 2080 mRNA 0.38 3 13275992 13278596

Neighbor

gene id symbol gene type direction distance location
rpe rpe,LOC107695573,LOC107725216,LOC106919839 coding upstream 40723 13232306 ~ 13235269 (+)
ackr3a ackr3a,LOC107670701,LOC107555037,LOC107725223,LOC107695574,LOC107571721 coding upstream 50856 13219623 ~ 13225136 (+)
LOC122351306 LOC107695589,LOC107555072,LOC107725238,LOC107601065,LOC107571720,LOC107739951,LOC107670699,LOC107555073 coding upstream 62451 13211745 ~ 13213541 (+)
tyw5 tyw5,LOC107725219,LOC107728297 coding upstream 96605 13176613 ~ 13179387 (+)
c9h2orf69 zgc:153521,LOC107718378,LOC107675339,LOC107601069,LOC107555833 coding upstream 154949 13118279 ~ 13121043 (+)
asb18 asb18,LOC107723656,LOC107686685,LOC107567774 coding downstream 84470 13363066 ~ 13370927 (+)
LOC122352182 LOC107685564,LOC107723675,LOC107725243,LOC107695580 coding downstream 92997 13371593 ~ 13386493 (+)
serpine3 serpine3,LOC107555035,LOC107567776,LOC107725220,LOC107695567 coding downstream 108064 13386660 ~ 13400112 (+)
wdfy2 wdfy2,LOC107725248,LOC107685482,LOC107723695,LOC107695578 coding downstream 133191 13411787 ~ 13419851 (+)
trnal-caa NA coding downstream 145118 13423714 ~ 13423826 (+)
G69796 stk17b non-coding upstream 142153 13130098 ~ 13133839 (+)
G69789 NA non-coding upstream 168160 13107595 ~ 13107832 (+)
G69783 NA non-coding upstream 169235 13106280 ~ 13106757 (+)
G69723 NA non-coding upstream 435841 12837719 ~ 12840151 (+)
G69718 NA non-coding upstream 502142 12773334 ~ 12773850 (+)
G69985 NA non-coding downstream 237093 13515689 ~ 13518237 (+)
G70021 NA non-coding downstream 390510 13669106 ~ 13669444 (+)
G70029 map3k19,LOC107684057,LOC107723646,LOC107555330,LOC107725236,LOC107658294 non-coding downstream 407200 13685796 ~ 13686466 (+)
LOC122351436 LOC107555330 non-coding downstream 408069 13686665 ~ 13689033 (+)
G70032 NA non-coding downstream 413618 13692214 ~ 13692487 (+)
G69755 NA other upstream 290014 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 472584 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 646457 12627535 ~ 12629535 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 823627 12434988 ~ 12452365 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other upstream 1120188 12046499 ~ 12155804 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other downstream 11097 13289693 ~ 13304591 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other downstream 397567 13676163 ~ 13684835 (+)
LOC122351767 NA other downstream 1308486 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 2122531 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 2429605 15708201 ~ 15715901 (+)

Expression


Co-expression Network